mRNA_P-littoralis_Contig722.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig722.2.1
Unique NamemRNA_P-littoralis_Contig722.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig722.2.1 vs. uniprot
Match: D7FQV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV3_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 4.060e-15
Identity = 43/79 (54.43%), Postives = 49/79 (62.03%), Query Frame = 2 
Query:  449 LKPHYDMAYAFSPADIGVVVQEEKVGWDGVDQTV*RFDHGKYFLDDGKSEITEWELLENRCGEGVTRDEDLRRFKSCLT 685
            L+ +YD +Y F P  IGVV  E  V  DG    V   D GKY L+   S IT+WELL NRCGEGVT D DLRRF + LT
Sbjct:  122 LRYYYDKSYMFDPKSIGVVFGETSVEIDGGVHVVKSVDRGKYALEGPDSTITQWELLNNRCGEGVTLDTDLRRFITHLT 200
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BLAST of mRNA_P-littoralis_Contig722.2.1 vs. uniprot
Match: UPI0000161E59 (hypothetical protein n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E59)

HSP 1 Score: 82.4 bits (202), Expect = 8.750e-15
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 2 
Query:  443 SALKPHYDMAYAFSPADIGVVVQEEKVGWDGVDQTV*RFDHGKYFLDDGKSEITEWELLENRCGEGVTRDEDLRRFKSCLTL 688
            S +K  Y++ YAF P+DIGV V    V W    QTV  FD+G Y L D KS++T+W++LENR G GVT ++DLRR+   L L
Sbjct:  181 SEIKSQYELDYAFDPSDIGVEVGRTTVTWGNKVQTVEAFDYGIYTLGDKKSKLTQWDVLENRHGRGVTLEQDLRRYIGQLVL 262
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BLAST of mRNA_P-littoralis_Contig722.2.1 vs. uniprot
Match: A0A6H5L073_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L073_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 5.870e-13
Identity = 39/83 (46.99%), Postives = 55/83 (66.27%), Query Frame = 2 
Query:  440 LSALKPHYDMAYAFSPADIGVVVQEEKVGWDGVDQTV*RFDHGKYFLDDGKSEITEWELLENRCGEGVTRDEDLRRFKSCLTL 688
            L A+K  Y++ YAF+P+ IGV V +  V W G  Q V  FD+G Y L D + ++T+W++LENR G GVT ++DLRR+   L L
Sbjct:  730 LGAIKSQYELDYAFNPSHIGVEVGKTTVMWKGKVQKVEAFDYGFYTLGDKEFKLTQWDVLENRRGSGVTLEQDLRRYIGQLVL 812
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BLAST of mRNA_P-littoralis_Contig722.2.1 vs. uniprot
Match: A0A6H5L6S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6S7_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 3.620e-11
Identity = 41/77 (53.25%), Postives = 49/77 (63.64%), Query Frame = 2 
Query:  440 LSALKPHYDMAYAFSPADIGVVVQEEKVGWDGVDQTV*RFDHGKYFLDDGKSEITEWELLENRCGEGVTRDEDLRRF 670
            L  LK ++D  Y F+PA I VVV   +V  DG    V  FDHGKY L  G   IT+WELL+NR GEG T D++LRRF
Sbjct:  213 LPGLKYYFDKNYMFNPASIEVVVGSTRVKIDGRIFVVESFDHGKYNLA-GHKPITQWELLQNRRGEGATLDDELRRF 288
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BLAST of mRNA_P-littoralis_Contig722.2.1 vs. uniprot
Match: A0A6H5K2A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.700e-10
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 2 
Query:  449 LKPHYDMAYAFSPADIGVVVQEEKVGWDGVDQTV*RFDHGKYFLDDGKSEITEWELLENRCGEGVTRDEDLRRF 670
            L+ +YD +Y   P +I VV  + +V  DG    V   DHGKY L+  +S IT+WELLE RC EGVT   DLRRF
Sbjct:  278 LQYYYDKSYVLDPQNIWVVFGQTRVKIDGGVHVVKSVDHGKYTLEGRESTITQWELLEKRCDEGVTLYTDLRRF 351
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BLAST of mRNA_P-littoralis_Contig722.2.1 vs. uniprot
Match: D7FZ65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ65_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 2.140e-8
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 2 
Query:  440 LSALKPHYDMAYAFSPADIGVVVQ------EEKVGWDGVDQTV*RFDHGKYFLDDGKSEITEWELLENRCGEGVTRDEDLRRF 670
            L  L+  +  AY F+P+ IGV +       E KV   G +  V  F+ GKY L+DG +EI +WELLE RCG GVT D++ RRF
Sbjct:  295 LDELESAFSAAYMFNPSHIGVSLNPLDPLNETKVEIGGRELVVKSFNTGKYTLEDG-TEIGQWELLETRCGGGVTLDDECRRF 376
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BLAST of mRNA_P-littoralis_Contig722.2.1 vs. uniprot
Match: D7FHJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHJ0_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.660e-7
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 2 
Query:  440 LSALKPHYDMAYAFSPADIGVVVQEEKVGWDGVDQTV*RFDHGKYFLDDGKSEITEWELLENRCGEG-------VTRDEDLRRF 670
            L +LK  Y++   ++P DIGVV++E  V +DGV  TV   + G Y L D   E+ +WELLE+R  E        VT +EDLRR+
Sbjct:   65 LDSLKKWYNLNAKYNPTDIGVVLEETCVKFDGVVYTVESVEEGWYSLRDSNIEMEQWELLESRFSEDGGVSNSPVTLEEDLRRY 148
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig722.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FQV3_ECTSI4.060e-1554.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI0000161E598.750e-1550.00hypothetical protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5L073_9PHAE5.870e-1346.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6S7_9PHAE3.620e-1153.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2A3_9PHAE1.700e-1050.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ65_ECTSI2.140e-845.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHJ0_ECTSI1.660e-742.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig722contigP-littoralis_Contig722:10348..11035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size688
Hectar predicted targeting categorysignal anchor
Exons1
Cds size543
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791503.376431-UTR-P-littoralis_Contig722:10347..103571680791503.376431-UTR-P-littoralis_Contig722:10347..10357Pylaiella littoralis U1_48UTRP-littoralis_Contig722 10348..10357 +
1680791503.403229-UTR-P-littoralis_Contig722:10900..110351680791503.403229-UTR-P-littoralis_Contig722:10900..11035Pylaiella littoralis U1_48UTRP-littoralis_Contig722 10901..11035 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791503.3908184-CDS-P-littoralis_Contig722:10357..109001680791503.3908184-CDS-P-littoralis_Contig722:10357..10900Pylaiella littoralis U1_48CDSP-littoralis_Contig722 10358..10900 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig722.2.1prot_P-littoralis_Contig722.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig722 10358..10900 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig722.2.1

>prot_P-littoralis_Contig722.2.1 ID=prot_P-littoralis_Contig722.2.1|Name=mRNA_P-littoralis_Contig722.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=181bp
MTMTATVMTAVGVTVTMMTATVMTAVGVTVITMTAAGVAAAGVTGCWMLQ
NRLQNRSSESFLRCMRGPLLPRIQRPTKISSKIAAAFPTKKVLLARVQRP
VRHPRPVELVRSRLSRNRLVLGCVTPARATSRSRIGCPSIVPALSALKPH
YDMAYAFSPADIGVVVQEEKVGWDGVDQTV*
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mRNA from alignment at P-littoralis_Contig722:10348..11035+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig722.2.1 ID=mRNA_P-littoralis_Contig722.2.1|Name=mRNA_P-littoralis_Contig722.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=688bp|location=Sequence derived from alignment at P-littoralis_Contig722:10348..11035+ (Pylaiella littoralis U1_48)
GGTGACAGCAATGACGATGACAGCGACAGTGATGACGGCGGTGGGGGTGA
CAGTGACGATGATGACAGCGACAGTGATGACAGCGGTGGGGGTGACAGTG
ATTACAATGACAGCAGCGGGGGTGGCAGCGGCAGGGGTGACAGGTTGCTG
GATGCTGCAAAATCGGCTGCAAAACCGGTCGAGCGAGTCGTTTCTGCGAT
GTATGCGGGGACCATTACTACCACGCATTCAGAGGCCAACAAAGATTTCG
TCGAAGATAGCTGCCGCATTTCCAACCAAAAAAGTGTTGCTCGCGAGGGT
ACAGCGCCCCGTGCGTCACCCGCGCCCGGTGGAATTGGTTCGGTCCCGCT
TATCGCGAAACCGGTTAGTGCTGGGCTGCGTGACACCTGCTCGGGCGACC
TCGAGATCAAGAATAGGGTGTCCTTCAATCGTACCCGCGCTTTCAGCACT
TAAGCCCCACTACGACATGGCCTACGCGTTCAGTCCGGCGGACATCGGGG
TGGTTGTGCAGGAGGAAAAGGTTGGGTGGGACGGGGTTGACCAAACGGTG
TAGAGATTCGATCACGGCAAATACTTCCTGGACGACGGGAAATCCGAAAT
CACCGAGTGGGAGCTCCTGGAAAACCGGTGCGGCGAAGGTGTGACACGCG
ACGAAGACCTCCGGCGGTTTAAGTCGTGCCTCACTTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig722:10348..11035+

>mRNA_P-littoralis_Contig722.2.1 ID=mRNA_P-littoralis_Contig722.2.1|Name=mRNA_P-littoralis_Contig722.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=543bp|location=Sequence derived from alignment at P-littoralis_Contig722:10348..11035+ (Pylaiella littoralis U1_48)
ATGACGATGACAGCGACAGTGATGACGGCGGTGGGGGTGACAGTGACGAT
GATGACAGCGACAGTGATGACAGCGGTGGGGGTGACAGTGATTACAATGA
CAGCAGCGGGGGTGGCAGCGGCAGGGGTGACAGGTTGCTGGATGCTGCAA
AATCGGCTGCAAAACCGGTCGAGCGAGTCGTTTCTGCGATGTATGCGGGG
ACCATTACTACCACGCATTCAGAGGCCAACAAAGATTTCGTCGAAGATAG
CTGCCGCATTTCCAACCAAAAAAGTGTTGCTCGCGAGGGTACAGCGCCCC
GTGCGTCACCCGCGCCCGGTGGAATTGGTTCGGTCCCGCTTATCGCGAAA
CCGGTTAGTGCTGGGCTGCGTGACACCTGCTCGGGCGACCTCGAGATCAA
GAATAGGGTGTCCTTCAATCGTACCCGCGCTTTCAGCACTTAAGCCCCAC
TACGACATGGCCTACGCGTTCAGTCCGGCGGACATCGGGGTGGTTGTGCA
GGAGGAAAAGGTTGGGTGGGACGGGGTTGACCAAACGGTGTAG
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