mRNA_P-littoralis_Contig721.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig721.18.1
Unique NamemRNA_P-littoralis_Contig721.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig721.18.1 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 7.970e-8
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:  187 PRMFSQDILEMRFAHIRAGMGCHKAPTASQ 276
            PRMFSQDILE RFAHIR GMG HKAPTA+Q
Sbjct:  794 PRMFSQDILEHRFAHIRTGMGTHKAPTATQ 823
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BLAST of mRNA_P-littoralis_Contig721.18.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 4.540e-6
Identity = 24/30 (80.00%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:  187 PRMFSQDILEMRFAHIRAGMGCHKAPTASQ 276
            PRMFSQDILE RFAHIR+G G HK PTA Q
Sbjct:  570 PRMFSQDILEHRFAHIRSGRGTHKNPTAMQ 599
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BLAST of mRNA_P-littoralis_Contig721.18.1 vs. uniprot
Match: A0A6H5KRI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRI1_9PHAE)

HSP 1 Score: 50.4 bits (119), Expect = 2.540e-5
Identity = 28/47 (59.57%), Postives = 28/47 (59.57%), Query Frame = 1 
Query:    7 ADLYNPRQDEDLACYYGLKKSFSGRSTTWVLSMSSLARERADAQWSF 147
            ADLY PRQDEDLA YYGLKKSFSG    W    S      AD  W F
Sbjct:  162 ADLYIPRQDEDLAFYYGLKKSFSG----WAEEYS------ADGSWKF 198
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig721.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KFP1_9PHAE7.970e-886.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE4.540e-680.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRI1_9PHAE2.540e-559.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig721contigP-littoralis_Contig721:88145..88677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size276
Hectar predicted targeting categoryother localisation
Exons2
Cds size276
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791503.3323674-CDS-P-littoralis_Contig721:88144..883481680791503.3323674-CDS-P-littoralis_Contig721:88144..88348Pylaiella littoralis U1_48CDSP-littoralis_Contig721 88145..88348 +
1680791503.343212-CDS-P-littoralis_Contig721:88605..886771680791503.343212-CDS-P-littoralis_Contig721:88605..88677Pylaiella littoralis U1_48CDSP-littoralis_Contig721 88606..88677 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig721.18.1prot_P-littoralis_Contig721.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig721 88145..88677 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig721.18.1

>prot_P-littoralis_Contig721.18.1 ID=prot_P-littoralis_Contig721.18.1|Name=mRNA_P-littoralis_Contig721.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=92bp
MLADLYNPRQDEDLACYYGLKKSFSGRSTTWVLSMSSLARERADAQWSFC
LPAGWAEEYGADPRMFSQDILEMRFAHIRAGMGCHKAPTASQ
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mRNA from alignment at P-littoralis_Contig721:88145..88677+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig721.18.1 ID=mRNA_P-littoralis_Contig721.18.1|Name=mRNA_P-littoralis_Contig721.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=533bp|location=Sequence derived from alignment at P-littoralis_Contig721:88145..88677+ (Pylaiella littoralis U1_48)
ATGTTGGCCGATTTATATAACCCGCGCCAGGACGAGGACCTCGCCTGCTA
CTACGGACTCAAGAAAAGCTTCTCTGGTAGGTCCACGACGTGGGTGCTGT
CGATGTCGTCATTGGCACGAGAGCGAGCCGATGCGCAGTGGAGTTTTTGT
CTACCGGCAGGATGGGCGGAGGAGTACGGTGCTGACCCACGCATGTTCAG
CCAGGTAACGAACGTTTTTCTTGTTCTGTTTTTTTCTTCGACGCAAGTAC
ATGAACCGTTTGGCGGTGACCACCAGGGCGCGCCCGTGCTGGTCAATAAT
CTGCAAGTGAACTCGGGGCTTGTGTGTGCGTATTTGTAAAGTATATATTT
TTGTTGGCTGGCGCGACGCTGTCGTCGTGTGGTGCTGGTGTCAATTAACT
CATTTATGTCCGTACGTTCGACCCCCTCGACGCGCGTGACTGCCCCTTGC
ATCTCACCCAGGACATTCTCGAAATGAGGTTCGCGCACATAAGGGCTGGA
ATGGGGTGTCACAAGGCTCCTACGGCGTCTCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig721:88145..88677+

>mRNA_P-littoralis_Contig721.18.1 ID=mRNA_P-littoralis_Contig721.18.1|Name=mRNA_P-littoralis_Contig721.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=276bp|location=Sequence derived from alignment at P-littoralis_Contig721:88145..88677+ (Pylaiella littoralis U1_48)
ATGTTGGCCGATTTATATAACCCGCGCCAGGACGAGGACCTCGCCTGCTA
CTACGGACTCAAGAAAAGCTTCTCTGGTAGGTCCACGACGTGGGTGCTGT
CGATGTCGTCATTGGCACGAGAGCGAGCCGATGCGCAGTGGAGTTTTTGT
CTACCGGCAGGATGGGCGGAGGAGTACGGTGCTGACCCACGCATGTTCAG
CCAGGACATTCTCGAAATGAGGTTCGCGCACATAAGGGCTGGAATGGGGT
GTCACAAGGCTCCTACGGCGTCTCAG
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