mRNA_P-littoralis_Contig721.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig721.6.1
Unique NamemRNA_P-littoralis_Contig721.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig721.6.1 vs. uniprot
Match: A0A6H5JGM7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGM7_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.670e-24
Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 1 
Query:    4 SKRWLHVATTAYWADLRDWSSAVGADWTHERDLILEPLTEGWCICIRPDCVRGMYHNYKLQRKRDKGGSSNRMAVGQSSPLGR 252
            S  W HV  + YWA+L +WS+ VG  WTHERDL+ +PL  G CIC R DCV  +Y  YK +R+R++ G+ + M +GQ SP+GR
Sbjct:   40 STNWQHVVDSEYWAELGEWSATVGEGWTHERDLVGDPLKAGECICRRADCVVNLYQRYKGRRQREEKGALHTMVIGQRSPMGR 122
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig721.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JGM7_9PHAE1.670e-2450.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig721contigP-littoralis_Contig721:31699..32774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size488
Hectar predicted targeting categoryother localisation
Exons3
Cds size486
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791502.9528677-CDS-P-littoralis_Contig721:31700..317821680791502.9528677-CDS-P-littoralis_Contig721:31700..31782Pylaiella littoralis U1_48CDSP-littoralis_Contig721 31701..31782 -
1680791502.9639976-CDS-P-littoralis_Contig721:32157..322881680791502.9639976-CDS-P-littoralis_Contig721:32157..32288Pylaiella littoralis U1_48CDSP-littoralis_Contig721 32158..32288 -
1680791502.9773686-CDS-P-littoralis_Contig721:32501..327741680791502.9773686-CDS-P-littoralis_Contig721:32501..32774Pylaiella littoralis U1_48CDSP-littoralis_Contig721 32502..32774 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig721.6.1prot_P-littoralis_Contig721.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig721 31701..32774 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig721.6.1

>prot_P-littoralis_Contig721.6.1 ID=prot_P-littoralis_Contig721.6.1|Name=mRNA_P-littoralis_Contig721.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=162bp
RSKRWLHVATTAYWADLRDWSSAVGADWTHERDLILEPLTEGWCICIRPD
CVRGMYHNYKLQRKRDKGGSSNRMAVGQSSPLGRYPSTRFQVQALLEHLE
VNGLVLDCCGSTRDALSMVLTGYGLHVVTNDVDHKLIADSHMDVTTRAFY
DLLSQETRRPDW
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mRNA from alignment at P-littoralis_Contig721:31699..32774-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig721.6.1 ID=mRNA_P-littoralis_Contig721.6.1|Name=mRNA_P-littoralis_Contig721.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1076bp|location=Sequence derived from alignment at P-littoralis_Contig721:31699..32774- (Pylaiella littoralis U1_48)
AGGTCAAAACGGTGGCTTCATGTGGCAACCACTGCATATTGGGCCGATCT
GAGGGATTGGTCTTCAGCGGTCGGGGCTGATTGGACCCACGAGCGGGACC
TTATCCTGGAACCACTGACTGAGGGCTGGTGCATTTGTATCCGGCCCGAC
TGTGTGCGCGGCATGTACCACAACTACAAGCTTCAACGCAAGAGGGACAA
GGGAGGATCTTCCAATCGCATGGCGGTTGGCCAGTCATCCCCGCTGGGCC
GCTATCCTTCGACGAGATTTCAGGTGAGCGGTACGGCAGTCAGTGCTGTA
ATGTAAAATATCTGTGGGTTGTGTAATGTTTGAGTACCAGGCAGTTATTA
CTTGGATCGTAGCGATGTTGGTGAGCGTTTTCAGAGGCAAGTGCTTGCTG
CCGGAGTACATGATATATGTATGACGACATACAGCGGTAGCGCTAACCAA
ACCAAACATGGCGCCTTGCTTGGTTCGTTTTGACAGGTGCAGGCTCTTTT
GGAACACTTGGAAGTGAACGGCCTAGTTCTCGATTGCTGTGGTTCCACTC
GAGACGCTCTCAGCATGGTTCTCACAGGATACGGTCTCCACGTTGTTACG
AACGACGTCGATCACAAGTACGTGCTGCAGAGTCTTGTCATTGCCCCACG
GCCTCGTGCTGTCTTGTATTTGCATCGATGTGCTCCGGTCAAAATGTTCT
TCGTAGGGCTGTCGTAGCAAAATATTGTGGAAGAAACACGAATGTTTGGG
CGCCATGCCAAGTGCCATGCCAAGTGCCGTCTCTGACCCACCTGACGAGC
GCCGACGTCCGTTGTCGTACACGAAACACCGAAAAAATCTTGGTGTGCGT
ACCTGGCGGGTGCAAGCTAACCGTTGGACGTAACTCATCAAATACCACCG
ATGGTGCCTGCACTTTTTTCATCTCGCCTTCCCCCGTAGCGATATCTGTC
TATTTTTTAACTGTTGCTGCACGATCGAAATACAACTCGCAGGTTGATTG
CGGATAGCCACATGGACGTTACGACGAGAGCTTTTTACGACCTACTCAGC
CAGGAAACGCGCCGCCCCGACTGGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig721:31699..32774-

>mRNA_P-littoralis_Contig721.6.1 ID=mRNA_P-littoralis_Contig721.6.1|Name=mRNA_P-littoralis_Contig721.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=486bp|location=Sequence derived from alignment at P-littoralis_Contig721:31699..32774- (Pylaiella littoralis U1_48)
AGGTCAAAACGGTGGCTTCATGTGGCAACCACTGCATATTGGGCCGATCT
GAGGGATTGGTCTTCAGCGGTCGGGGCTGATTGGACCCACGAGCGGGACC
TTATCCTGGAACCACTGACTGAGGGCTGGTGCATTTGTATCCGGCCCGAC
TGTGTGCGCGGCATGTACCACAACTACAAGCTTCAACGCAAGAGGGACAA
GGGAGGATCTTCCAATCGCATGGCGGTTGGCCAGTCATCCCCGCTGGGCC
GCTATCCTTCGACGAGATTTCAGGTGCAGGCTCTTTTGGAACACTTGGAA
GTGAACGGCCTAGTTCTCGATTGCTGTGGTTCCACTCGAGACGCTCTCAG
CATGGTTCTCACAGGATACGGTCTCCACGTTGTTACGAACGACGTCGATC
ACAAGTTGATTGCGGATAGCCACATGGACGTTACGACGAGAGCTTTTTAC
GACCTACTCAGCCAGGAAACGCGCCGCCCCGACTGG
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