mRNA_P-littoralis_Contig721.5.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig721.5.1 vs. uniprot
Match: A0A6H5KL66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL66_9PHAE) HSP 1 Score: 302 bits (774), Expect = 5.450e-92 Identity = 157/252 (62.30%), Postives = 198/252 (78.57%), Query Frame = 3
Query: 3 SSQYNSKNWKNFNNVFLDDFMEMVNKTVKQNLGRITQAFMLRLPAICNSRRAAVDEVDAFLYPQYKDRDVQRVIITARTSAVRKAKAVLEKSFAFNPEGAAKLRSLSGAMTTARQAEAMLNAHELASQKFDKVLRFEALGDKQGGTKPTTSKIAFFQPESKTTRTTKTPRSTSAARKDFKDMSLVAKEF*EAIKRTM-DPNLTSKERETVMSQIGIVLPQALAHAEDGGGHTINKAQGVNWAIETFCADAVQ 755
SSQYN+KN++NFNNVFLD+FMEM N+TVKQNLGRITQA+M++LP IC+SRRAAVDEVD LYP Y +RDV+R II R A+RKAKAVLEKSFAF+ EG +LRSLSGA+TT R+ EAMLNA+++A +FDKVL EALGDK+ G KP+TSKI FF E+ T + TK P ST AR+D KDM +AKEF I+ M + N+ ++E ++S IG+VLP AL+HA+DGG + +NKA GV WA +T+C DA+Q
Sbjct: 340 SSQYNTKNYRNFNNVFLDEFMEMENRTVKQNLGRITQAYMVKLPRICDSRRAAVDEVDTRLYPSYSERDVRRGIIKLRAGAIRKAKAVLEKSFAFSVEGKEQLRSLSGAVTTDRKGEAMLNANKIAEVRFDKVLLGEALGDKENGAKPSTSKIPFFPAENNTHKATKAPTSTIVARRDLKDMDAMAKEFWGVIQAAMMEENVNTEEWNRIVSSIGVVLPMALSHADDGGTYGVNKAAGVKWAFDTYCPDAIQ 591
BLAST of mRNA_P-littoralis_Contig721.5.1 vs. uniprot
Match: D7FTC0_ECTSI (Similar to solute carrier family 35, member F4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC0_ECTSI) HSP 1 Score: 305 bits (781), Expect = 8.010e-92 Identity = 155/252 (61.51%), Postives = 197/252 (78.17%), Query Frame = 3
Query: 3 SSQYNSKNWKNFNNVFLDDFMEMVNKTVKQNLGRITQAFMLRLPAICNSRRAAVDEVDAFLYPQYKDRDVQRVIITARTSAVRKAKAVLEKSFAFNPEGAAKLRSLSGAMTTARQAEAMLNAHELASQKFDKVLRFEALGDKQGGTKPTTSKIAFFQPESKTTRTTKTPRSTSAARKDFKDMSLVAKEF*EAIKRT-MDPNLTSKERETVMSQIGIVLPQALAHAEDGGGHTINKAQGVNWAIETFCADAVQ 755
SSQ+N+KN++NFNNVFL + EM+N+ VKQNLGRITQA+M RLP IC+SRR AVDEVDA YP YK+RDV+R +I R +RKAK VL +SFAF+ EG +LRSL GA+TTAR+AEAMLNA+++A +KFD VL++EALGDK GGTKP+TSKI FF PE+ T + + P ST+ ARKDF+DM+L+A EF + IK M+ LT +ER +M IG+VLP AL+ + DGG +TINKA G NWA +TFC DA+Q
Sbjct: 571 SSQFNTKNYRNFNNVFLGEIQEMMNRVVKQNLGRITQAYMTRLPLICDSRRGAVDEVDASFYPSYKERDVRRAVIRVRVGPIRKAKEVLAESFAFSGEGKDQLRSLGGAVTTARKAEAMLNANDIAERKFDAVLKYEALGDKVGGTKPSTSKIPFFAPENTTLKASTAPTSTAVARKDFRDMTLLATEFWKVIKSAVMEGELTEEERNEIMGSIGVVLPMALSRSGDGGAYTINKAAGANWAFDTFCPDAIQ 822
BLAST of mRNA_P-littoralis_Contig721.5.1 vs. uniprot
Match: A0A6H5LAS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAS0_9PHAE) HSP 1 Score: 253 bits (645), Expect = 2.550e-73 Identity = 152/327 (46.48%), Postives = 194/327 (59.33%), Query Frame = 3
Query: 3 SSQYNSKNWKNFNNVFLDDFMEMVNKTVKQNLGRITQAFMLRLPAICNSRRAAVDEVDAFLYPQYKDRDV-------QRVIITARTSAVRKAKAVLEKSFAFNPEGAAKLRSLSGAMTTARQAEAMLNAHELASQKFDKVL--------------------------------------------------------------RF------EALGDKQGGTKPTTSKIAFFQPESKTTRTTKTPRSTSAARKDFKDMSLVAKEF*EAIKRTM-DPNLTSKERETVMSQIGIVLPQALAHAEDGGGHTINKAQGVNWAIETFCADAVQ 755
SSQYN+KN++NFNNVFLD+FMEM N+TVKQNLGRITQA+M++LP IC+SRRAAVDEVD LYP Y + R + A+RKAKAVLEKSFAF+ EG +LRSLSGA+TT R+ EAMLNA+++A +FDKVL RF EALGDK+ G KP+TSKI FF E+ T + TK P ST AR+D KDM +AKEF I+ M + N+ ++E ++S IG+VLP AL+HA+DGG + +NKA GV WA +T+C DA++
Sbjct: 1650 SSQYNTKNYRNFNNVFLDEFMEMENRTVKQNLGRITQAYMVKLPRICDSRRAAVDEVDTRLYPSYSEXYAILAVPPWTRSTLACTRRAIRKAKAVLEKSFAFSVEGKEQLRSLSGAVTTDRKGEAMLNANKIAEVRFDKVLLGEALGDKENGAKPSTSKIPFFPAENNTHKATKAPTSTIVXGAVSTDRKGEAMLNANKIAEVRFDKVLLGEALGDKENGAKPSTSKIPFFPAENNTHKATKAPTSTIVARRDLKDMDAMAKEFWGVIQAAMMEENVNTEEWNRIVSSIGVVLPMALSHADDGGTYGVNKAAGVKWAFDTYCPDAIR 1976 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig721.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig721.5.1 >prot_P-littoralis_Contig721.5.1 ID=prot_P-littoralis_Contig721.5.1|Name=mRNA_P-littoralis_Contig721.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=170bp MEMVNKTVKQNLGRITQAFMLRLPAICNSRRAAVDEVDAFLYPQYKDRDVback to top mRNA from alignment at P-littoralis_Contig721:24375..25130+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig721.5.1 ID=mRNA_P-littoralis_Contig721.5.1|Name=mRNA_P-littoralis_Contig721.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=756bp|location=Sequence derived from alignment at P-littoralis_Contig721:24375..25130+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig721:24375..25130+ >mRNA_P-littoralis_Contig721.5.1 ID=mRNA_P-littoralis_Contig721.5.1|Name=mRNA_P-littoralis_Contig721.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=510bp|location=Sequence derived from alignment at P-littoralis_Contig721:24375..25130+ (Pylaiella littoralis U1_48)back to top |