mRNA_P-littoralis_Contig721.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig721.5.1
Unique NamemRNA_P-littoralis_Contig721.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig721.5.1 vs. uniprot
Match: A0A6H5KL66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL66_9PHAE)

HSP 1 Score: 302 bits (774), Expect = 5.450e-92
Identity = 157/252 (62.30%), Postives = 198/252 (78.57%), Query Frame = 3
Query:    3 SSQYNSKNWKNFNNVFLDDFMEMVNKTVKQNLGRITQAFMLRLPAICNSRRAAVDEVDAFLYPQYKDRDVQRVIITARTSAVRKAKAVLEKSFAFNPEGAAKLRSLSGAMTTARQAEAMLNAHELASQKFDKVLRFEALGDKQGGTKPTTSKIAFFQPESKTTRTTKTPRSTSAARKDFKDMSLVAKEF*EAIKRTM-DPNLTSKERETVMSQIGIVLPQALAHAEDGGGHTINKAQGVNWAIETFCADAVQ 755
            SSQYN+KN++NFNNVFLD+FMEM N+TVKQNLGRITQA+M++LP IC+SRRAAVDEVD  LYP Y +RDV+R II  R  A+RKAKAVLEKSFAF+ EG  +LRSLSGA+TT R+ EAMLNA+++A  +FDKVL  EALGDK+ G KP+TSKI FF  E+ T + TK P ST  AR+D KDM  +AKEF   I+  M + N+ ++E   ++S IG+VLP AL+HA+DGG + +NKA GV WA +T+C DA+Q
Sbjct:  340 SSQYNTKNYRNFNNVFLDEFMEMENRTVKQNLGRITQAYMVKLPRICDSRRAAVDEVDTRLYPSYSERDVRRGIIKLRAGAIRKAKAVLEKSFAFSVEGKEQLRSLSGAVTTDRKGEAMLNANKIAEVRFDKVLLGEALGDKENGAKPSTSKIPFFPAENNTHKATKAPTSTIVARRDLKDMDAMAKEFWGVIQAAMMEENVNTEEWNRIVSSIGVVLPMALSHADDGGTYGVNKAAGVKWAFDTYCPDAIQ 591          
BLAST of mRNA_P-littoralis_Contig721.5.1 vs. uniprot
Match: D7FTC0_ECTSI (Similar to solute carrier family 35, member F4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC0_ECTSI)

HSP 1 Score: 305 bits (781), Expect = 8.010e-92
Identity = 155/252 (61.51%), Postives = 197/252 (78.17%), Query Frame = 3
Query:    3 SSQYNSKNWKNFNNVFLDDFMEMVNKTVKQNLGRITQAFMLRLPAICNSRRAAVDEVDAFLYPQYKDRDVQRVIITARTSAVRKAKAVLEKSFAFNPEGAAKLRSLSGAMTTARQAEAMLNAHELASQKFDKVLRFEALGDKQGGTKPTTSKIAFFQPESKTTRTTKTPRSTSAARKDFKDMSLVAKEF*EAIKRT-MDPNLTSKERETVMSQIGIVLPQALAHAEDGGGHTINKAQGVNWAIETFCADAVQ 755
            SSQ+N+KN++NFNNVFL +  EM+N+ VKQNLGRITQA+M RLP IC+SRR AVDEVDA  YP YK+RDV+R +I  R   +RKAK VL +SFAF+ EG  +LRSL GA+TTAR+AEAMLNA+++A +KFD VL++EALGDK GGTKP+TSKI FF PE+ T + +  P ST+ ARKDF+DM+L+A EF + IK   M+  LT +ER  +M  IG+VLP AL+ + DGG +TINKA G NWA +TFC DA+Q
Sbjct:  571 SSQFNTKNYRNFNNVFLGEIQEMMNRVVKQNLGRITQAYMTRLPLICDSRRGAVDEVDASFYPSYKERDVRRAVIRVRVGPIRKAKEVLAESFAFSGEGKDQLRSLGGAVTTARKAEAMLNANDIAERKFDAVLKYEALGDKVGGTKPSTSKIPFFAPENTTLKASTAPTSTAVARKDFRDMTLLATEFWKVIKSAVMEGELTEEERNEIMGSIGVVLPMALSRSGDGGAYTINKAAGANWAFDTFCPDAIQ 822          
BLAST of mRNA_P-littoralis_Contig721.5.1 vs. uniprot
Match: A0A6H5LAS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAS0_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 2.550e-73
Identity = 152/327 (46.48%), Postives = 194/327 (59.33%), Query Frame = 3
Query:    3 SSQYNSKNWKNFNNVFLDDFMEMVNKTVKQNLGRITQAFMLRLPAICNSRRAAVDEVDAFLYPQYKDRDV-------QRVIITARTSAVRKAKAVLEKSFAFNPEGAAKLRSLSGAMTTARQAEAMLNAHELASQKFDKVL--------------------------------------------------------------RF------EALGDKQGGTKPTTSKIAFFQPESKTTRTTKTPRSTSAARKDFKDMSLVAKEF*EAIKRTM-DPNLTSKERETVMSQIGIVLPQALAHAEDGGGHTINKAQGVNWAIETFCADAVQ 755
            SSQYN+KN++NFNNVFLD+FMEM N+TVKQNLGRITQA+M++LP IC+SRRAAVDEVD  LYP Y +           R  +     A+RKAKAVLEKSFAF+ EG  +LRSLSGA+TT R+ EAMLNA+++A  +FDKVL                                                              RF      EALGDK+ G KP+TSKI FF  E+ T + TK P ST  AR+D KDM  +AKEF   I+  M + N+ ++E   ++S IG+VLP AL+HA+DGG + +NKA GV WA +T+C DA++
Sbjct: 1650 SSQYNTKNYRNFNNVFLDEFMEMENRTVKQNLGRITQAYMVKLPRICDSRRAAVDEVDTRLYPSYSEXYAILAVPPWTRSTLACTRRAIRKAKAVLEKSFAFSVEGKEQLRSLSGAVTTDRKGEAMLNANKIAEVRFDKVLLGEALGDKENGAKPSTSKIPFFPAENNTHKATKAPTSTIVXGAVSTDRKGEAMLNANKIAEVRFDKVLLGEALGDKENGAKPSTSKIPFFPAENNTHKATKAPTSTIVARRDLKDMDAMAKEFWGVIQAAMMEENVNTEEWNRIVSSIGVVLPMALSHADDGGTYGVNKAAGVKWAFDTYCPDAIR 1976          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig721.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KL66_9PHAE5.450e-9262.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTC0_ECTSI8.010e-9261.51Similar to solute carrier family 35, member F4 n=1... [more]
A0A6H5LAS0_9PHAE2.550e-7346.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig721contigP-littoralis_Contig721:24375..25130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size756
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionsimilar to solute carrier family 35, member F4
Ec32 orthologEc-05_000300.1
Cds size510
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791502.8942661-UTR-P-littoralis_Contig721:24374..244361680791502.8942661-UTR-P-littoralis_Contig721:24374..24436Pylaiella littoralis U1_48UTRP-littoralis_Contig721 24375..24436 +
1680791502.9207408-UTR-P-littoralis_Contig721:24946..251301680791502.9207408-UTR-P-littoralis_Contig721:24946..25130Pylaiella littoralis U1_48UTRP-littoralis_Contig721 24947..25130 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791502.9054124-CDS-P-littoralis_Contig721:24436..249461680791502.9054124-CDS-P-littoralis_Contig721:24436..24946Pylaiella littoralis U1_48CDSP-littoralis_Contig721 24437..24946 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig721.5.1prot_P-littoralis_Contig721.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig721 24437..24946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig721.5.1

>prot_P-littoralis_Contig721.5.1 ID=prot_P-littoralis_Contig721.5.1|Name=mRNA_P-littoralis_Contig721.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=170bp
MEMVNKTVKQNLGRITQAFMLRLPAICNSRRAAVDEVDAFLYPQYKDRDV
QRVIITARTSAVRKAKAVLEKSFAFNPEGAAKLRSLSGAMTTARQAEAML
NAHELASQKFDKVLRFEALGDKQGGTKPTTSKIAFFQPESKTTRTTKTPR
STSAARKDFKDMSLVAKEF*
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mRNA from alignment at P-littoralis_Contig721:24375..25130+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig721.5.1 ID=mRNA_P-littoralis_Contig721.5.1|Name=mRNA_P-littoralis_Contig721.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=756bp|location=Sequence derived from alignment at P-littoralis_Contig721:24375..25130+ (Pylaiella littoralis U1_48)
TTTCGTCGCAGTACAACAGCAAGAACTGGAAGAACTTCAACAACGTTTTT CTCGACGATTTCATGGAAATGGTCAACAAGACAGTCAAGCAAAACCTGGG AAGAATCACTCAGGCGTTCATGCTGAGGCTTCCAGCGATATGCAACTCGC GGAGAGCCGCCGTGGATGAGGTAGATGCGTTTCTGTACCCGCAGTACAAA GACCGGGATGTACAGCGGGTGATAATCACGGCCAGGACTAGTGCAGTGCG GAAGGCGAAGGCGGTGCTGGAGAAATCGTTCGCCTTTAACCCAGAGGGTG CAGCAAAGCTCCGATCATTGAGCGGAGCTATGACGACTGCCCGCCAAGCG GAGGCTATGCTTAACGCTCATGAGCTGGCATCGCAAAAGTTCGACAAGGT GTTGAGGTTCGAGGCGCTGGGGGATAAGCAGGGCGGGACAAAGCCGACCA CGAGCAAAATAGCTTTTTTCCAACCCGAAAGCAAGACAACCCGGACAACA AAGACGCCCAGGAGTACTTCTGCAGCACGGAAAGACTTCAAGGACATGTC ACTCGTGGCAAAGGAGTTCTGAGAAGCCATTAAGCGAACCATGGACCCCA ATCTCACGTCCAAGGAGCGTGAGACCGTCATGTCTCAGATCGGGATTGTA TTGCCCCAGGCTCTGGCACACGCTGAAGACGGTGGAGGACACACAATCAA CAAAGCACAAGGGGTGAACTGGGCGATCGAAACGTTTTGCGCCGATGCTG TCCAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig721:24375..25130+

>mRNA_P-littoralis_Contig721.5.1 ID=mRNA_P-littoralis_Contig721.5.1|Name=mRNA_P-littoralis_Contig721.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=510bp|location=Sequence derived from alignment at P-littoralis_Contig721:24375..25130+ (Pylaiella littoralis U1_48)
ATGGAAATGGTCAACAAGACAGTCAAGCAAAACCTGGGAAGAATCACTCA
GGCGTTCATGCTGAGGCTTCCAGCGATATGCAACTCGCGGAGAGCCGCCG
TGGATGAGGTAGATGCGTTTCTGTACCCGCAGTACAAAGACCGGGATGTA
CAGCGGGTGATAATCACGGCCAGGACTAGTGCAGTGCGGAAGGCGAAGGC
GGTGCTGGAGAAATCGTTCGCCTTTAACCCAGAGGGTGCAGCAAAGCTCC
GATCATTGAGCGGAGCTATGACGACTGCCCGCCAAGCGGAGGCTATGCTT
AACGCTCATGAGCTGGCATCGCAAAAGTTCGACAAGGTGTTGAGGTTCGA
GGCGCTGGGGGATAAGCAGGGCGGGACAAAGCCGACCACGAGCAAAATAG
CTTTTTTCCAACCCGAAAGCAAGACAACCCGGACAACAAAGACGCCCAGG
AGTACTTCTGCAGCACGGAAAGACTTCAAGGACATGTCACTCGTGGCAAA
GGAGTTCTGA
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