mRNA_P-littoralis_Contig721.17.9 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig721.17.9
Unique NamemRNA_P-littoralis_Contig721.17.9
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig721.17.9 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig721contigP-littoralis_Contig721:90380..93648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size753
Hectar predicted targeting categoryother localisation
Exons2
Cds size399
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791502.6753726-UTR-P-littoralis_Contig721:90379..905391680791502.6753726-UTR-P-littoralis_Contig721:90379..90539Pylaiella littoralis U1_48UTRP-littoralis_Contig721 90380..90539 -
1680791502.6855311-UTR-P-littoralis_Contig721:93055..932471680791502.6855311-UTR-P-littoralis_Contig721:93055..93247Pylaiella littoralis U1_48UTRP-littoralis_Contig721 93056..93247 -
1680791502.713548-UTR-P-littoralis_Contig721:93646..936481680791502.713548-UTR-P-littoralis_Contig721:93646..93648Pylaiella littoralis U1_48UTRP-littoralis_Contig721 93647..93648 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791502.698852-CDS-P-littoralis_Contig721:93247..936461680791502.698852-CDS-P-littoralis_Contig721:93247..93646Pylaiella littoralis U1_48CDSP-littoralis_Contig721 93248..93646 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig721.17.9prot_P-littoralis_Contig721.17.9Pylaiella littoralis U1_48polypeptideP-littoralis_Contig721 93248..93646 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig721.17.9

>prot_P-littoralis_Contig721.17.9 ID=prot_P-littoralis_Contig721.17.9|Name=mRNA_P-littoralis_Contig721.17.9|organism=Pylaiella littoralis U1_48|type=polypeptide|length=133bp
MRGGPYVVDQSKIILADGSSFTNLSLLQATERLAPLVGSWGNQTEMSAFA
AMAAAVTASDATIGTAAFKKAAGPRAMLLWGLEALRDHLHERGAKVFLPG
TKAPAAATPASAEQQSPPAPAAAPQVSPEASA*
back to top

mRNA from alignment at P-littoralis_Contig721:90380..93648-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig721.17.9 ID=mRNA_P-littoralis_Contig721.17.9|Name=mRNA_P-littoralis_Contig721.17.9|organism=Pylaiella littoralis U1_48|type=mRNA|length=3269bp|location=Sequence derived from alignment at P-littoralis_Contig721:90380..93648- (Pylaiella littoralis U1_48)
GCATGCGCGGTGGACCATATGTGGTCGACCAATCTAAGATCATCCTCGCA
GACGGGTCTTCTTTCACGAACCTCTCCCTCCTGCAGGCGACGGAGCGCCT
AGCTCCCCTGGTGGGGAGCTGGGGTAACCAGACCGAGATGTCGGCCTTCG
CGGCGATGGCAGCAGCGGTCACCGCAAGCGACGCCACCATCGGCACCGCC
GCGTTCAAGAAGGCGGCGGGACCGCGGGCCATGCTTCTGTGGGGTTTAGA
GGCCCTCCGCGACCACCTCCATGAACGTGGGGCCAAAGTTTTCCTGCCGG
GCACCAAAGCGCCAGCAGCGGCCACGCCAGCGAGCGCTGAGCAGCAGTCG
CCCCCGGCGCCAGCGGCGGCCCCACAGGTCTCTCCGGAGGCGTCGGCGTA
GCAGACGATACCAGCAGCAGCCGCCCCAACACAGGACCAGCCGGCAAGGG
CGGGGGAACAAGAGACGGCCTCAGAGCGTGGTTCGGTAGCTGAGGAAGTG
GAGGCGGTGCAGCGGGCGCTGGCGGTGGATGCTGTCCAGCGGGAGAACCG
TAAACTTGTGGCCTTGGTTCAGTCGTCGGATGTTTCTCGCGAGGTGAATT
CACGTACCCGGTCGTTTTCCCGTTTCGCCTTGTTTTTATATTTCACACCT
TTCGTCGTTCACCACGCTCTCTTTCGACCTCTGTTCTCTGACACATATGA
TACTTTTCCAAAGTTTGATATTTTACAGCAGTAGCGGAAATTTCACGCAT
ATGATACACTGCTGCTGTACGCCACACAGACCCCCACCCACAATCCTCGG
GCCTTGTATGTATATATCGCCAATATAAACAGCAGTCGCGTTACATGGTT
AAATTCCTGTTGCCCTCGAAGACGGTGATGGAAGCTTACCTGCGATCGAG
CGTATGGCGACGATCATTACTGCTGTACAATGCGTGCAGCGACGCAGTAG
CTCACACGGCGGTACACCGGGTTCATATCACTCGTGTCTACATCACTGCG
GTTCATATTGTGCAACGACTTGAGCACATACGGCGGTACATCGAATGCAC
GACACCCGTCACTACGTAGCGTCGCGGGAACATACATTGTTGGCTGAATA
CATCATGCATCATACTCCGTACATGAGTGTGGGCCGGAGTATACGGTTGT
AATTTTGGAAAGGAAATATGCTGCGGTATACCGCAAGAGCAGATGCTGAT
ATACATGTACTGCGGTAAAAGTATCGATGCCGACTAACACGGCGGCCACG
ACTGCGAACTATAATACTTACTTCGTATCTGATTGCAGTTGTACAAGTAT
GGATGCACATGTCTACTGAAAAGACGCTGAAGTATACTGGAGAACAGCGG
CTGATATATACTCCGTATGTACTGCTGTAAATGTATCTGATTGCAGTACG
TACAAGTATGGATGTACAGGTCTACTGGAAAGACGCTGAGATATACCGGA
GAATAGCGGCTGACATATATGTACTGCTGTAAAGGTACCGATGCCGATAA
ACACTGCGGCCACGACTGCGAATAATACTTGTGTAATTGCGGTACAAGTA
TGGATGCCCAGGTCTACAGCAGAAACGCCTGAAAATATAGGTGCTGATAT
ATACCGATGTCATGGGTAATTCATTAGGGCACAGGGCGGCTGCGTCATGT
AGGGTCGCACCACCGCTGATGAAGGGGTGCCACCCAAAAGGATTACCTAC
CAAGCGGGCTGGTGTACACGGCTGTAATGAGAGGTACTACAGAATCTTGG
TTTCCCCTGTGTTTCATACTACAGCGCCGTACAGCAGCGTCCGACAGTAT
CACCGTACCCATCATGGCACACTGAAAAGTACGAAGTACGGTTTACTCTT
ACACGAACGTAAGACAGAGGCTACGAATGCCCCTCGGCACGGCGACGATC
ATGCGGCGACAGCGATTAATTTCGTTAACTCCTGTCTTCTGCACGATGGC
GCGGCGACAATTAAATAAAATAAAAACTCATACGGCAACAATTACAACGC
GGTGACGGCGACTATCTTCGGGAAGTCTTGCGTTTTTCTTTCACGAGTGC
ACGGCGACGATAAAAATGTTTCAATGCGACGACGGAGACTATTTTGCGAA
ACCTTGTCTGGTTCACTTTGGTACGGCGACGGGTACCAAAGGTTTTTCAC
GGCGACGGTTACATTGCGGCGACGGCGACGGGTTTCGATAAGCCTTGTTC
TTTCCACGATTTCACGGCGACGATTACAATGCGGCGACGGCGTCTATTTT
CGCGAAGTTTTGCCTTTTTCACGACGGCACGGCGACGATTACGATGTGGC
GACGGTGACGATTACTATGCGGCGACTATGACTATTTTCGCGAGGTTTTG
TCTTTTTCACGACGGGTACCAAAGGTTTTGCACGGCGACGGTTCTATTGC
GGCGACGTCGACGGGTTTAGATTAGCCTTGTTCTTTCCACGATTTCACGG
CGACGATTACAATGCGGCGACGGCGTCTATTTTCGCGATGTTTTGCCTTT
TTCACGACGGCACGGCGACGATTACGATGCGGCGACGGTGACGATTACTA
TGCGGCGACTATGACTATTTTCGCGAAGTTTTGTCTTTTTCACGATTGCA
TGGCGAAGTCTGACTACGACTATTTTCGCGAAGTCTGATCCTTTTCAAGA
CTGCACGGCGACGATAGAACGCGGCGACGGCGACTATTCTCGTGAAGTCT
GGTCCTTTTTCACGATTGCACGGCGACGATATACTGCGGCGACGGCGACC
ATTTTCGTACAAATTTACCCTTTTACGACGGCACGGCGACGATTACATTG
CGCGCGACGACTATTTTCGTGAAGTCTTGTCCTTTGCTTTTCTTTTTCAC
GATTGCACGGCGGCGTCTAATTTATTTAATTTCATTTTATTTTATTTATT
CACTTATTTTTGGCACGGCGACGATTACAATTCTACGACGGTAACGAGTA
TACCAACACGACTTAACGGCGACGACGACGTTTCTCTTTAACGAGAACTT
CGATTACATTGGGAGTCACGACTCCCTTGCGACCCGTACGACGACGATTA
CCACGCTAACGCAGCCGTTGGCATGCCCTGTGTTTCCGACCCGCCGTGAT
AAATTGTAGCTCCGACTGAAGCTGGACGGCGTTCTCGACGTCATGCGCGA
TTCGGACGGGCGGTTCACGTGGTACTCATTGCGTACCCATCTCGAGGCCG
CCATGAGGATGGCCATGGACCTTAACCTTCTCGACGCACGGAAGATTCTG
ACCGACACGATTGCGCGAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig721:90380..93648-

>mRNA_P-littoralis_Contig721.17.9 ID=mRNA_P-littoralis_Contig721.17.9|Name=mRNA_P-littoralis_Contig721.17.9|organism=Pylaiella littoralis U1_48|type=CDS|length=399bp|location=Sequence derived from alignment at P-littoralis_Contig721:90380..93648- (Pylaiella littoralis U1_48)
ATGCGCGGTGGACCATATGTGGTCGACCAATCTAAGATCATCCTCGCAGA
CGGGTCTTCTTTCACGAACCTCTCCCTCCTGCAGGCGACGGAGCGCCTAG
CTCCCCTGGTGGGGAGCTGGGGTAACCAGACCGAGATGTCGGCCTTCGCG
GCGATGGCAGCAGCGGTCACCGCAAGCGACGCCACCATCGGCACCGCCGC
GTTCAAGAAGGCGGCGGGACCGCGGGCCATGCTTCTGTGGGGTTTAGAGG
CCCTCCGCGACCACCTCCATGAACGTGGGGCCAAAGTTTTCCTGCCGGGC
ACCAAAGCGCCAGCAGCGGCCACGCCAGCGAGCGCTGAGCAGCAGTCGCC
CCCGGCGCCAGCGGCGGCCCCACAGGTCTCTCCGGAGGCGTCGGCGTAG
back to top