mRNA_P-littoralis_Contig721.34.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig721.34.1
Unique NamemRNA_P-littoralis_Contig721.34.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig721.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig721contigP-littoralis_Contig721:142975..145081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1125
Hectar predicted targeting categoryother localisation
Exons2
Cds size894
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791502.5666554-UTR-P-littoralis_Contig721:142974..1431681680791502.5666554-UTR-P-littoralis_Contig721:142974..143168Pylaiella littoralis U1_48UTRP-littoralis_Contig721 142975..143168 -
1680791502.6058524-UTR-P-littoralis_Contig721:145044..1450811680791502.6058524-UTR-P-littoralis_Contig721:145044..145081Pylaiella littoralis U1_48UTRP-littoralis_Contig721 145045..145081 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791502.582225-CDS-P-littoralis_Contig721:143168..1435131680791502.582225-CDS-P-littoralis_Contig721:143168..143513Pylaiella littoralis U1_48CDSP-littoralis_Contig721 143169..143513 -
1680791502.594754-CDS-P-littoralis_Contig721:144495..1450441680791502.594754-CDS-P-littoralis_Contig721:144495..145044Pylaiella littoralis U1_48CDSP-littoralis_Contig721 144496..145044 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig721.34.1prot_P-littoralis_Contig721.34.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig721 143169..145044 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig721.34.1

>prot_P-littoralis_Contig721.34.1 ID=prot_P-littoralis_Contig721.34.1|Name=mRNA_P-littoralis_Contig721.34.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=298bp
MPSSSAQKKAKKRLKEQQQSTQLPKKGKQPERLSSQDGGGSAAGGAADMI
SNAQNEESHDQTHSSPKAHDQPTEETSDSNLYTLLSRNDDSEVEEDDEAG
SAAEQVIGEEGEVAVETCSAVSTTARPQSSTARDGVHPRFQPGGAIESYI
LEKFRQADEEGTSPPKHVMQMVTGSTHGPEIDQLGQRLSDVEQALAARST
PATGQTGGQARTVSSTTTRTTQQRDNNRGRSQTRERSASKSRKETHNKSV
SFADKVKGTKECTYLACQNSERRFSHTIDECRIAASHKKAGLILKKA*
back to top

mRNA from alignment at P-littoralis_Contig721:142975..145081-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig721.34.1 ID=mRNA_P-littoralis_Contig721.34.1|Name=mRNA_P-littoralis_Contig721.34.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2107bp|location=Sequence derived from alignment at P-littoralis_Contig721:142975..145081- (Pylaiella littoralis U1_48)
CAGTGTCACGCACACCGAACAAGAGATAATTTGAAGCATGCCTTCTTCTT
CAGCTCAAAAGAAAGCGAAAAAGAGGCTGAAAGAACAGCAGCAGTCCACG
CAACTTCCCAAGAAAGGAAAGCAACCGGAACGCTTATCATCGCAAGATGG
AGGTGGTTCGGCTGCTGGGGGAGCCGCTGACATGATCAGCAACGCCCAGA
ATGAGGAGTCTCACGACCAGACTCACTCGTCACCGAAGGCTCACGACCAG
CCAACGGAGGAGACCAGCGACTCCAACCTGTACACTCTTCTTAGTCGGAA
CGATGACTCCGAAGTAGAAGAAGACGACGAGGCGGGGTCCGCTGCCGAAC
AGGTTATTGGCGAAGAAGGTGAAGTAGCCGTAGAGACGTGTAGCGCCGTC
TCGACGACCGCTCGCCCTCAATCGTCGACAGCTCGCGATGGCGTGCACCC
GCGCTTCCAACCTGGTGGAGCAATCGAGAGCTACATTCTGGAAAAGTTCC
GGCAAGCTGATGAGGAGGGGACCTCACCGCCGAAACATGTGATGCAAATG
GTGACTGGCTCCACTCATGGGCCGGAAATCGATCAGGTGAACCCGAGAAA
CCTTGCATCTAATCTAGCAGCCGAACCTTCCGAAGTACAAGTAGCCCAAC
CTCCATCCTCCTCCCCCTCCGCTCAACAAGAGCAAACCAGGCCAATGATA
GCGCCCACCATGCACACGATGCAACCCACTCTGCCCCAACAACAGCAGAC
TTCACCACAATCCATGCATCAACAACCCAACTTGTCACAGCAGCAATCAA
TCGGACAAACTACTCCCGTAAACATTGCTCCGATGCAGACCGTGCACTCT
CAAGTTGGCCAATCTCAGCATGGATACCCTCACCCCGCGCACCCAGACCG
CTTCACACTGAAAACGATTGACCTCCCAGCATCTCTCAAGCTCGAAGGAA
TAGCTTCAGAAGATGTACCTGAGTTGATGGCACTATACCGCGCCCACATT
CGCTTGCTCTCACCCGACACGACTTCGGATTCTACGATTGATCACCGCGC
TATCAAACACCTAGCGCTATTCGTACGAGGAGCAGCAGCCCAAAGTTTGA
GCTTAATACTGAGTTCGAATCTTGAGTGGAGACCAGAATCCACTCTTGCA
GCGATGCGTGCTCGAGGCGAACACATAATCGTTTCCCCTCCACAGACTTG
GCATGACTGGGTTACAGCATTTACGACTCTGTTCGCTCCGGCGAACCGCA
TCTCTCTCCTCGCTCGCGATGTCATGACTCTACAAGCCAAGCCGAACGAA
TCGGTTGACATTTACGGTCTCCGAGTATCACAAGCATATTCACGACTGAG
TTACTGCGCACGAACATGCGTTCAACCAAGCGTTGATAGCATCTTTCGAA
AACGGTCTCCAGCCCGCGTTGCGTGTAGAAATGATAAGAGAGGATGCATC
CCAATCTTTCATGGCTTCCAAAGCTCGGGCACGAAAACATGAAGCAAACC
AGCTGCGATCACCATCTCAAATTCCAACGGCTATCTCCGCCCTGCACGCT
GATCCCCGTGACGCCCAGCTGGGCCAGCGCTTGTCAGACGTCGAACAAGC
ACTCGCGGCTCGTTCGACTCCTGCCACCGGCCAAACCGGCGGACAAGCTC
GCACGGTCAGCTCGACGACCACACGGACCACGCAGCAGCGCGACAACAAC
CGCGGAAGATCGCAGACCCGCGAAAGATCGGCATCGAAGAGTCGTAAAGA
GACACATAACAAATCAGTCTCTTTTGCCGACAAGGTCAAGGGAACCAAGG
AATGCACGTACTTGGCGTGCCAGAATTCAGAGAGGCGCTTCTCGCACACG
ATAGATGAATGTCGTATTGCGGCGAGCCACAAGAAGGCTGGTCTCATTTT
GAAGAAAGCGTAGGGGTGCCCGCGTCGGCACAGTTCCTCTGCCAACACGG
GACAACATTTGTCACTTGAGTCGGAAATTGATCTAGCAAGTCAAAGAGTC
AAGGTAGACAAGAGGGATACTACACACAAAACTAGTGTGGCGTCCCTGGC
GGAAGTAAAGCAGCAGTGCACAAATAATGCACGAGAGAAGCGTTCAGCAG
AAGGGGT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig721:142975..145081-

>mRNA_P-littoralis_Contig721.34.1 ID=mRNA_P-littoralis_Contig721.34.1|Name=mRNA_P-littoralis_Contig721.34.1|organism=Pylaiella littoralis U1_48|type=CDS|length=894bp|location=Sequence derived from alignment at P-littoralis_Contig721:142975..145081- (Pylaiella littoralis U1_48)
ATGCCTTCTTCTTCAGCTCAAAAGAAAGCGAAAAAGAGGCTGAAAGAACA
GCAGCAGTCCACGCAACTTCCCAAGAAAGGAAAGCAACCGGAACGCTTAT
CATCGCAAGATGGAGGTGGTTCGGCTGCTGGGGGAGCCGCTGACATGATC
AGCAACGCCCAGAATGAGGAGTCTCACGACCAGACTCACTCGTCACCGAA
GGCTCACGACCAGCCAACGGAGGAGACCAGCGACTCCAACCTGTACACTC
TTCTTAGTCGGAACGATGACTCCGAAGTAGAAGAAGACGACGAGGCGGGG
TCCGCTGCCGAACAGGTTATTGGCGAAGAAGGTGAAGTAGCCGTAGAGAC
GTGTAGCGCCGTCTCGACGACCGCTCGCCCTCAATCGTCGACAGCTCGCG
ATGGCGTGCACCCGCGCTTCCAACCTGGTGGAGCAATCGAGAGCTACATT
CTGGAAAAGTTCCGGCAAGCTGATGAGGAGGGGACCTCACCGCCGAAACA
TGTGATGCAAATGGTGACTGGCTCCACTCATGGGCCGGAAATCGATCAGC
TGGGCCAGCGCTTGTCAGACGTCGAACAAGCACTCGCGGCTCGTTCGACT
CCTGCCACCGGCCAAACCGGCGGACAAGCTCGCACGGTCAGCTCGACGAC
CACACGGACCACGCAGCAGCGCGACAACAACCGCGGAAGATCGCAGACCC
GCGAAAGATCGGCATCGAAGAGTCGTAAAGAGACACATAACAAATCAGTC
TCTTTTGCCGACAAGGTCAAGGGAACCAAGGAATGCACGTACTTGGCGTG
CCAGAATTCAGAGAGGCGCTTCTCGCACACGATAGATGAATGTCGTATTG
CGGCGAGCCACAAGAAGGCTGGTCTCATTTTGAAGAAAGCGTAG
back to top