mRNA_P-littoralis_Contig720.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig720.6.1
Unique NamemRNA_P-littoralis_Contig720.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig720.6.1 vs. uniprot
Match: A0A6H5JDZ7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDZ7_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.050e-8
Identity = 30/68 (44.12%), Postives = 40/68 (58.82%), Query Frame = 1 
Query:    1 MGGVDKADQHNGTYQSRHRANNYFWRRLFEQKLMQACTNAWLLFRWWLDDMQSKLKAEIDRLEAGGAA 204
            MGGVD ADQ  G +   HR   +FWRR+F+QKL  A +NAWLLF  W   + ++  A ++     G A
Sbjct:  300 MGGVDVADQRLGAHAHTHRPMTFFWRRVFDQKLSHAVSNAWLLFYEWAWVLATQCTAALEAATQHGGA 367
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BLAST of mRNA_P-littoralis_Contig720.6.1 vs. uniprot
Match: A0A6H5LEE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEE0_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 2.430e-7
Identity = 35/97 (36.08%), Postives = 54/97 (55.67%), Query Frame = 1 
Query:    1 MGGVDKADQHNGTYQSRHRANNYFWRRLFEQKLMQACTNAWLLFRWWLDDMQSKLKAEIDRLEAGGAAERDGTADGLFLGQLKEESTAFEALAKQSR 291
            M GVD ADQ NG++   H++   FWRR+++ KL QA TNA+L+FR W++ +  +++A            +   A G  L +L+  ST    L+K  R
Sbjct:  618 MLGVDLADQQNGSHTHDHKSYTNFWRRVYDAKLEQALTNAFLIFRKWVELLIREVEA------------KKPIAPGGELEELELASTELATLSKVER 702
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BLAST of mRNA_P-littoralis_Contig720.6.1 vs. uniprot
Match: A0A6H5JER6_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JER6_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.110e-6
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 MGGVDKADQHNGTYQSRHRANNYFWRRLFEQKLMQACTNAWLLFRWWLD 147
            M GVD ADQ NG++   H++   FWRR+++ KL QA TNA+L+FR W++
Sbjct:  294 MLGVDLADQQNGSHTHDHKSYTNFWRRVYDAKLEQALTNAFLIFRKWVE 342
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig720.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JDZ7_9PHAE1.050e-844.12DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5LEE0_9PHAE2.430e-736.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JER6_9PHAE1.110e-651.02DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig720contigP-littoralis_Contig720:31809..32099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size292
Hectar predicted targeting categoryother localisation
Exons1
Cds size291
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791500.0744421-CDS-P-littoralis_Contig720:31808..320991680791500.0744421-CDS-P-littoralis_Contig720:31808..32099Pylaiella littoralis U1_48CDSP-littoralis_Contig720 31809..32099 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig720.6.1prot_P-littoralis_Contig720.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig720 31809..32099 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig720.6.1

>prot_P-littoralis_Contig720.6.1 ID=prot_P-littoralis_Contig720.6.1|Name=mRNA_P-littoralis_Contig720.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=97bp
MGGVDKADQHNGTYQSRHRANNYFWRRLFEQKLMQACTNAWLLFRWWLDD
MQSKLKAEIDRLEAGGAAERDGTADGLFLGQLKEESTAFEALAKQSR
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mRNA from alignment at P-littoralis_Contig720:31809..32099+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig720.6.1 ID=mRNA_P-littoralis_Contig720.6.1|Name=mRNA_P-littoralis_Contig720.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=291bp|location=Sequence derived from alignment at P-littoralis_Contig720:31809..32099+ (Pylaiella littoralis U1_48)
ATGGGTGGGGTAGACAAAGCGGACCAGCACAATGGTACGTACCAGTCCCG
ACACCGAGCGAATAACTACTTCTGGCGCCGGCTTTTTGAGCAAAAGCTGA
TGCAAGCCTGCACGAATGCGTGGCTGTTGTTTCGTTGGTGGTTAGACGAT
ATGCAAAGCAAGCTGAAGGCTGAGATTGACAGATTGGAAGCCGGGGGGGC
AGCCGAACGCGACGGTACCGCTGATGGGTTGTTCCTTGGACAACTGAAGG
AAGAAAGTACGGCATTTGAGGCATTGGCTAAACAGAGTAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig720:31809..32099+

>mRNA_P-littoralis_Contig720.6.1 ID=mRNA_P-littoralis_Contig720.6.1|Name=mRNA_P-littoralis_Contig720.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=291bp|location=Sequence derived from alignment at P-littoralis_Contig720:31809..32099+ (Pylaiella littoralis U1_48)
ATGGGTGGGGTAGACAAAGCGGACCAGCACAATGGTACGTACCAGTCCCG
ACACCGAGCGAATAACTACTTCTGGCGCCGGCTTTTTGAGCAAAAGCTGA
TGCAAGCCTGCACGAATGCGTGGCTGTTGTTTCGTTGGTGGTTAGACGAT
ATGCAAAGCAAGCTGAAGGCTGAGATTGACAGATTGGAAGCCGGGGGGGC
AGCCGAACGCGACGGTACCGCTGATGGGTTGTTCCTTGGACAACTGAAGG
AAGAAAGTACGGCATTTGAGGCATTGGCTAAACAGAGTAGG
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