mRNA_P-littoralis_Contig720.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig720.4.1
Unique NamemRNA_P-littoralis_Contig720.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig720.4.1 vs. uniprot
Match: D7FZ42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ42_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 2.420e-10
Identity = 47/106 (44.34%), Postives = 65/106 (61.32%), Query Frame = 1 
Query:    1 MHDQTEGGQRRKRGDGGAVGDEGGGTDEEAVGDENLSDAGSDAELPGDLADYDG-SGDLKDKKLCCTAEDKLVEKVPEFWGKKALRFVFKIVKATEQVTSVRRDQS 315
            MH + +GGQ R  G GG  GD+     +E  GDE +SD GSD E PGDLADYD  S  +K  +      + +V+K+PE WGK AL+FVF++V+ T    + R+ +S
Sbjct:  424 MHSK-KGGQNRTCGRGGNGGDDETEYVQEPEGDEEMSDGGSDGEFPGDLADYDEPSVTIKSPQQI----NAMVDKIPEGWGKAALKFVFELVQHTHDFRNDRKHES 524
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BLAST of mRNA_P-littoralis_Contig720.4.1 vs. uniprot
Match: A0A6H5K9N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9N7_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 5.700e-7
Identity = 38/93 (40.86%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:   52 AVGDEGGGTDEEAV----GDENLSDAGSDAELPGDLADYDG-SGDLKDKKLCCTAEDKLVEKVPEFWGKKALRFVFKIVKATEQVTSVRRDQS 315
            ++G+ GG  + E V    GDE++SD GSD E PG LA+YD  S  +K  +      + +V+K+PE WGK ALRFVF++V+ T    + R+ ++
Sbjct:  297 SMGENGGDNETEYVQDPEGDEDMSDGGSDGEFPGGLANYDEPSVTIKSPQQI----NAMVDKIPEGWGKPALRFVFELVQHTHDFRNGRKKKN 385
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BLAST of mRNA_P-littoralis_Contig720.4.1 vs. uniprot
Match: A0A6H5JFU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU5_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 8.100e-7
Identity = 38/106 (35.85%), Postives = 62/106 (58.49%), Query Frame = 1 
Query:    1 MHDQTEGGQRRKRGDGGAVGDEGGGTDEEAVGDENLSDAGSDAELPGDLADYDGSGDLKDKKLCCTAEDKLVEKVPEFWGKKALRFVFKIVKATEQVTSVRRDQSR 318
            MH + +G + R  G GG  GD+    ++EA G+ ++SD GS+ E PGD ADYD    +  K       + +V+K+ E WGK+AL F+F +++ T+Q+   R  + +
Sbjct:  402 MHSR-QGSRDRTCGRGGKGGDDEAEYEQEAEGNHDMSDGGSEGEFPGDAADYDQDVFVSGKSP--QQVNAMVDKIQEAWGKEALTFIFGLMQNTKQLVQDRNKKKK 504
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BLAST of mRNA_P-littoralis_Contig720.4.1 vs. uniprot
Match: A0A6H5KVH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVH8_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.820e-6
Identity = 39/92 (42.39%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:   94 GDENLSDAGSDAELPGDLADYDG-SGDLKDKKLCCTAEDKLVEKVPEFWGKKALRFVFKIVKATEQVTSVRRDQSRLIKMVNAEKAALLQDS 366
            GDE +SD GSD E PGDLADYD  S  +K  +      + +V K+PE WGK AL+FVF+ V   + +   R D+    K  N  K+ + QD+
Sbjct:  587 GDEEMSDGGSDGEFPGDLADYDEPSVTIKSPQQI----NAMVYKIPEGWGKAALKFVFEFV---QHIHDFRNDR----KKKNMAKSKVHQDA 667
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig720.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FZ42_ECTSI2.420e-1044.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9N7_9PHAE5.700e-740.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFU5_9PHAE8.100e-735.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVH8_9PHAE2.820e-642.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig720contigP-littoralis_Contig720:27295..28354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size370
Hectar predicted targeting categoryother localisation
Exons2
Cds size369
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791500.0236204-CDS-P-littoralis_Contig720:27294..276001680791500.0236204-CDS-P-littoralis_Contig720:27294..27600Pylaiella littoralis U1_48CDSP-littoralis_Contig720 27295..27600 +
1680791500.0340202-CDS-P-littoralis_Contig720:28291..283541680791500.0340202-CDS-P-littoralis_Contig720:28291..28354Pylaiella littoralis U1_48CDSP-littoralis_Contig720 28292..28354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig720.4.1prot_P-littoralis_Contig720.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig720 27295..28354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig720.4.1

>prot_P-littoralis_Contig720.4.1 ID=prot_P-littoralis_Contig720.4.1|Name=mRNA_P-littoralis_Contig720.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=123bp
MHDQTEGGQRRKRGDGGAVGDEGGGTDEEAVGDENLSDAGSDAELPGDLA
DYDGSGDLKDKKLCCTAEDKLVEKVPEFWGKKALRFVFKIVKATEQVTSV
RRDQSRLIKMVNAEKAALLQDSG
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mRNA from alignment at P-littoralis_Contig720:27295..28354+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig720.4.1 ID=mRNA_P-littoralis_Contig720.4.1|Name=mRNA_P-littoralis_Contig720.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1060bp|location=Sequence derived from alignment at P-littoralis_Contig720:27295..28354+ (Pylaiella littoralis U1_48)
ATGCACGATCAGACGGAAGGCGGGCAAAGAAGGAAACGCGGCGACGGTGG
TGCTGTAGGGGACGAAGGAGGAGGGACAGACGAGGAAGCTGTGGGGGACG
AGAACCTCAGCGATGCCGGCAGCGACGCAGAGTTGCCGGGGGACTTAGCT
GATTATGACGGTAGTGGCGACCTAAAGGACAAGAAATTGTGTTGTACGGC
CGAAGACAAACTGGTGGAGAAGGTACCGGAGTTTTGGGGGAAGAAGGCGT
TGCGGTTCGTGTTCAAGATCGTGAAAGCCACCGAACAAGTCACGTCGGTG
CGCCGGGTGAGCACGAAGTCATCGATGAGTGTTGTGTGATGAATAGTCTG
AGGTCGTGTTCGTGTTGGATTATGGACCCCCCTCCCGTCGTTTATCTTGT
GGTATCTCAGTTGTTCTTTTTCGTTCATAAAAACAAATGATACAGGCTGG
CTTAGATAGTACTCAAAATTTAGTCAGCATCGTCGTATCATTCAGTGATT
TTTAGTCGAGCTATGGCCTACTTTTCAACTTCTCTGATTTTTTTTTGCCT
TTGCCGACAGATATCCGTTGTATGGAAAGGGACCCCAAATCTGTAGTGAA
AACAGAAAGAACGAAAAGCGTTAAAACGTTTTTTTGCTGCGAAGAGTATA
CGAGTGCCAATTCTCAGGGTCTACGCATATTTTGTGGAGGGGGCGTGAAG
AAACATACGTTAATTATGGTGAAGAAAAAAATGCTCACGGACACGCGGGT
CTTGACAATCATCGGCTCTTCCGGTTGCACTCTACAGCTATAACTAGCCA
CAACAAGGGCAGTTGGTCGGCTCGAGAATAAAAGAACACATTCCATGCAT
ACCCTTAATCTGAAATGCCTTAAACAAACGGAACGTTTTTCAGCCTATTC
ATTGACTGCGACACATTTTCGCCCTCCTCAGCAGTGCCGCGTGTTCACTC
ACAACAATCGGTTCCCCAATTCGCGCGTTCTTCGTTTCGCGAATCAGGAT
CAATCACGATTAATAAAGATGGTCAACGCGGAGAAGGCGGCGCTGCTCCA
AGACAGTGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig720:27295..28354+

>mRNA_P-littoralis_Contig720.4.1 ID=mRNA_P-littoralis_Contig720.4.1|Name=mRNA_P-littoralis_Contig720.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=369bp|location=Sequence derived from alignment at P-littoralis_Contig720:27295..28354+ (Pylaiella littoralis U1_48)
ATGCACGATCAGACGGAAGGCGGGCAAAGAAGGAAACGCGGCGACGGTGG
TGCTGTAGGGGACGAAGGAGGAGGGACAGACGAGGAAGCTGTGGGGGACG
AGAACCTCAGCGATGCCGGCAGCGACGCAGAGTTGCCGGGGGACTTAGCT
GATTATGACGGTAGTGGCGACCTAAAGGACAAGAAATTGTGTTGTACGGC
CGAAGACAAACTGGTGGAGAAGGTACCGGAGTTTTGGGGGAAGAAGGCGT
TGCGGTTCGTGTTCAAGATCGTGAAAGCCACCGAACAAGTCACGTCGGTG
CGCCGGGATCAATCACGATTAATAAAGATGGTCAACGCGGAGAAGGCGGC
GCTGCTCCAAGACAGTGGG
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