mRNA_P-littoralis_Contig72.109.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig72.109.1 vs. uniprot
Match: D8LEA7_ECTSI (FHA-HIT protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEA7_ECTSI) HSP 1 Score: 403 bits (1036), Expect = 1.650e-123 Identity = 230/352 (65.34%), Postives = 259/352 (73.58%), Query Frame = 3
Query: 2058 VQLPLESPLRAQGVDTVIQVLGPNLDPRFPDCLTEEPDRARNLLRQCYDKTLAIFWEQALLAAAGGAVGNSATTGAAXXXXXXXXXXXXXXXX-------------------NSQAAAMAVGKGTSGTKRKRPL--PEYKKGPPVPAKLSGYWKTVLLHFLKDQDGPRPPELQNEVYFEDDQCVVIYDGYPKSRYHLLLLPKPKFLDVESPSELRRDQHLSRLHQLHATGAAVAEALTQQGAGVVRCGYHGIPSLKPLHLHIISQDFDSERMKKRSHWNSFTTDFFLEFSWVEARLQELGSLELHNLRLKDLEATPLRCFRCGRQMGNMTLLKNHNRGCTAPLSQRAAAGSG 3050
V+L +SPLR++GVDTVIQVLGPNLDPRFP+CL EPDRAR LLRQCYDKTL FW+ +S T+GA XXXXXXXXXXXXXXXX ++ AA VGKG TKRKR L PEY++ PP P K +G+WK VL +LKD+ P P ELQ EVYF D+QCVV+YDGYPKSRYHLLLLPKPKFLDV+ SELRRD+HLS L QLHAT AVAEAL+QQGAGV+RCGYHGIPSL+PLHLHIISQDFDSER+ KR HWNSFTTDFFL+ SWVEARL E GSL L RLK LEATPLRCFRC M NMT LK H GC P+ ++ + G G
Sbjct: 141 VKLSQDSPLRSEGVDTVIQVLGPNLDPRFPECLANEPDRARYLLRQCYDKTLDSFWKLV----------SSETSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHCSGSAAAADTGVGKGAV-TKRKRALALPEYRRTPPTPVKGAGHWKAVLFQYLKDE--PMPVELQREVYFSDNQCVVVYDGYPKSRYHLLLLPKPKFLDVKQASELRRDEHLSSLRQLHATATAVAEALSQQGAGVIRCGYHGIPSLEPLHLHIISQDFDSERLTKRKHWNSFTTDFFLDASWVEARLLERGSLGLDKERLKALEATPLRCFRCHSPMTNMTKLKEHLLGCNLPVPKKNSCGGG 479
BLAST of mRNA_P-littoralis_Contig72.109.1 vs. uniprot
Match: A0A6H5K612_9PHAE (HIT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K612_9PHAE) HSP 1 Score: 319 bits (818), Expect = 5.130e-93 Identity = 184/279 (65.95%), Postives = 210/279 (75.27%), Query Frame = 3
Query: 2058 VQLPLESPLRAQGVDTVIQVLGPNLDPRFPDCLTEEPDRARNLLRQCYDKTLAIFWEQALLAAAGGAVGNSATTGAAXXXXXXXXXXXXXXXXNSQ-------------AAAMAVGK-GTSGTKRKRPLPEYKKGPPVPAKLSGYWKTVLLHFLKDQDGPRPPELQNEVYFEDDQCVVIYDGYPKSRYHLLLLPKPKFLDVESPSELRRDQHLSRLHQLHATGAAVAEALTQQGAGVVRCGYHGIPSLKPLHLHIISQDFDSERMKKRSHWNSFTTDFF 2852
V+L +SPLR++GVDTVIQVLGPNLDPRF +CL EPDRAR LLR+CYDK+L FW+ +S T+GA XXXXXXXXXXXXXXXX A AVGK G + KR LPEY++ PPVP K +G+WK VL +LKD+ P P ELQ EV+F +DQCVV+YDGYPKSRYHLLLLPKPKFLDV+ SELRRD+HLS L QLHAT AAVAEAL+QQGAGV+RCGYHGIPSL+PLHLHIISQDFDSER+ KR HWNSFTT F
Sbjct: 136 VKLSQDSPLRSEGVDTVIQVLGPNLDPRFAECLANEPDRARYLLRECYDKSLDSFWKLV----------SSETSGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGADTAVGKEGVTKRKRALALPEYRQTPPVPVKGAGHWKAVLFQYLKDR--PMPDELQREVFFSNDQCVVVYDGYPKSRYHLLLLPKPKFLDVKQASELRRDEHLSSLRQLHATAAAVAEALSQQGAGVIRCGYHGIPSLEPLHLHIISQDFDSERLTKRKHWNSFTTGTF 402
BLAST of mRNA_P-littoralis_Contig72.109.1 vs. uniprot
Match: A0A6H5KUS4_9PHAE (HIT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUS4_9PHAE) HSP 1 Score: 200 bits (508), Expect = 4.940e-55 Identity = 97/178 (54.49%), Postives = 128/178 (71.91%), Query Frame = 3
Query: 2394 RPLPEYKKGPPVPAK-LSGY------WKTVLLHFLKDQDGPRPPELQNEVYFEDDQCVVIYDGYPKSRYHLLLLPKPKFLDVESPSELRRDQHLSRLHQLHATGAAVAEALTQQGAGVVRCGYHGIPSLKPLHLHIISQDFDSERMKKRSHWNSFTTDFFLEFSWVEARLQELGSLEL 2906
+P YK+ PPVP + + G+ WK V F K+ D P LQ+++YF+D++ +VIYDGYPK+R+HLLL+P+P FLDV PS+LRR+ HLS L Q+HA G AVAE L+QQG G +R G H +PS++PLH+HIISQDFDSERM+ HWN FTTD FLE +W+E L+ G L+L
Sbjct: 14 QPFGHYKETPPVPIENIKGFRVGRDGWKEVFHLFFKNCDHPA---LQDQIYFQDERFMVIYDGYPKARHHLLLMPRPSFLDVIRPSDLRRE-HLSALRQMHALGRAVAEGLSQQGIGEIRIGVHAVPSMEPLHMHIISQDFDSERMRMPRHWNIFTTDIFLEPAWIEEMLERHGCLQL 187
BLAST of mRNA_P-littoralis_Contig72.109.1 vs. uniprot
Match: D7G951_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G951_ECTSI) HSP 1 Score: 194 bits (493), Expect = 1.040e-51 Identity = 96/201 (47.76%), Postives = 131/201 (65.17%), Query Frame = 3
Query: 2454 KTVLLHFLKDQDGPRPPELQNEVYFEDDQCVVIYDGYPKSRYHLLLLPKPKFLDVESPSELRRDQHLSRLHQLHATGAAVAEALTQQG---------AGVVRCGYHGIPSLKPLHLHIISQDFDSERMKKRSHWNSFTTDFFLEFSWVEARLQELGSLELHNLRLKDLEATPLRCFRCGRQ--MGNMTLLKNHNRGCTAPL 3023
KT L FL ++Q EV++ D+ +V YDG+PK ++HLL++P+ FL+V PS LR++ HL +L +LHA G A+A+AL+ Q A V+RCGYH +PS +PLHLH++S D D +K+++HWNSFTTD FLE SWVE RL+E GSL L ++LE LRCFRC + +M LK HNR CTAP+
Sbjct: 73 KTALFLFLMYHTNE---QIQGEVFYMDEDVMVTYDGFPKGKFHLLVVPRETFLNVTGPSALRKE-HLPKLRRLHAMGTALAKALSLQAEVRELSHPSANVIRCGYHAMPSQEPLHLHVVSMDLDGTGLKRKTHWNSFTTDLFLEASWVERRLEERGSLGLDMRNFRELEHVKLRCFRCPGEPEFRHMESLKAHNRACTAPV 269
BLAST of mRNA_P-littoralis_Contig72.109.1 vs. uniprot
Match: D7G953_ECTSI (Aprataxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G953_ECTSI) HSP 1 Score: 176 bits (445), Expect = 8.990e-47 Identity = 86/157 (54.78%), Postives = 113/157 (71.97%), Query Frame = 3
Query: 2394 RPLPEYKKGPPVPAK-LSGY------WKTVLLHFLKDQDGPRPPELQNEVYFEDDQCVVIYDGYPKSRYHLLLLPKPKFLDVESPSELRRDQHLSRLHQLHATGAAVAEALTQQGAGVVRCGYHGIPSLKPLHLHIISQDFDSERMKKRSHWNSFTT 2843
+P YK P VP + + G+ WK V F K+ D P LQ+++YF+D++ +VIYDGYPK+R+HLLL+P+P FLDV PS+LRR+ HLS LHQ+HA G AVAE L+QQG G +R G H +PS++PLH+HIISQDFDSER++ HWN FTT
Sbjct: 13 KPFGHYKGTPRVPIENVKGFRIGRDGWKEVFHLFFKNCDHPA---LQDQIYFQDERFMVIYDGYPKARHHLLLMPRPSFLDVMRPSDLRRE-HLSALHQMHALGRAVAEDLSQQGIGEIRIGVHAVPSMEPLHMHIISQDFDSERLRMPRHWNIFTT 165
BLAST of mRNA_P-littoralis_Contig72.109.1 vs. uniprot
Match: W7TK61_9STRA (Basic helix-loop-helix family protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TK61_9STRA) HSP 1 Score: 166 bits (419), Expect = 1.010e-39 Identity = 79/190 (41.58%), Postives = 116/190 (61.05%), Query Frame = 3
Query: 2445 GYWKTVLLHFLKDQDGPRPPELQNEVYFEDDQCVVIYDGYPKSRYHLLLLPKPKFLDVESPSELRRDQHLSRLHQLHATGAAVAEALTQQGAGV-VRCGYHGIPSLKPLHLHIISQDFDSERMKKRSHWNSFTTDFFLEFSWVEARLQELGSLELHNLRLKDLEATPLRCFRCGRQMGNMTLLKNHNRGC 3011
G W L+ +L PEL++ +++E + + IYDGYPK++ HLLL+PKP+FL + S +EL D+H ++ +LH+ +A L + G+ +R GYH +PSL+PLH+HI+SQDFDS +K + HWNSFTT FFL+ VE LQ G + + + + L LRC CG + LK H +GC
Sbjct: 303 GGWHGALIRYLD-----HTPELRHFIFYETSEWMAIYDGYPKAKVHLLLIPKPEFLTINSVTELSHDKHNKQISRLHSAARCIATKLEKDTNGLRLRMGYHSLPSLRPLHIHIVSQDFDSPALKTKRHWNSFTTPFFLDLLQVETALQIHGKVTVRHEDAEALLKLSLRCHACGAVQKTIPDLKQHVKGC 487
BLAST of mRNA_P-littoralis_Contig72.109.1 vs. uniprot
Match: A0A2P4Q372_RHIID (HIT domain-containing protein n=9 Tax=Rhizophagus TaxID=1129544 RepID=A0A2P4Q372_RHIID) HSP 1 Score: 149 bits (375), Expect = 2.280e-34 Identity = 96/306 (31.37%), Postives = 168/306 (54.90%), Query Frame = 3
Query: 2058 VQLPLESPL-RAQGVDTVIQVLGPNLDPRFPDCLTEEPDRARNLLRQCYDKTLAIFWEQALLAAAGGAVGNSATTGAAXXXXXXXXXXXXXXXXNSQAAAMAVGKGTSGTKRKRPLPEYKKGPPVPAKL-SGYWKTVLLHFLKDQDGPRPPEL--QNEVYFEDDQCVVIYDGYPKSRYHLLLLPKPKFLDVESPSELRRDQHLSRLHQLHATGAAVAEALTQQGAGVV-RCGYHGIPSLKPLHLHIISQDFDSERMKKRSHWNSFTTDFFLEFSWVEARLQELGSLELHNLRLKDLEATPLRCFRC 2960
V++P +S L +++G++ +I V+ PN++P PD ++ E +A+ LL++ YD L FWE G S TT + +A + ++ + PE + P+K+ SG W VLL + + PE+ ++EVY+ D++ V+I+D YPK++ HLL++P+ + +++ EL++ Q+L + L G V E + Q+ + R G+H +PSL+ LH+H+ISQDF S +K + HWNSFTT+FF++ +E L++ G ++ + +DL +PL+C C
Sbjct: 160 VKVPKDSDLHKSEGIEQIIFVVSPNMNPSRPDPVSLE--KAKELLKKTYDSILNAFWELT-----NGQEYRSITT---------------IKDNVQEVSAFDILMKSASKPSSKISPESSRR--TPSKVGSGGWNNVLLPYCQK------PEMFPKSEVYYYDNEFVIIFDKYPKAKNHLLVIPRKQ---IDNIGELKK-QNLELVRALKEKGQWVIEKMKQENPKLFFRMGFHAVPSLRQLHMHVISQDFISPSLKNKKHWNSFTTEFFIDVEEIERILEKQGEVKFNKAYYEDLLKSPLKCHLC 431
BLAST of mRNA_P-littoralis_Contig72.109.1 vs. uniprot
Match: A0A7M7RHJ6_STRPU (HIT domain-containing protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7RHJ6_STRPU) HSP 1 Score: 139 bits (349), Expect = 1.480e-33 Identity = 74/190 (38.95%), Postives = 107/190 (56.32%), Query Frame = 3
Query: 2430 PAKLSGYWKTVLLHFLKDQDGPRPPELQNEVYFEDDQCVVIYDGYPKSRYHLLLLPKPKFLDVESPSELRRDQHLSRLHQLHATGAAVAEALTQQGAGVVRCGYHGIPSLKPLHLHIISQDFDSERMKKRSHWNSFTTDFFLEFSWVEARLQELGSLELHNLRLKDLEATPLRCFRCGRQMGNMTLLKNH 2999
PAK G+W LL +KD P LQ +F DD+ VVI D YPK+R+H L+ P+ K ++++ + +HL L+ +H G + + + + GYH IPS+ LHLH IS+DFDS +K + HWNSFTTD+F++ + A L+E G ++ ++L PLRC C Q NM LK H
Sbjct: 17 PAKKKGFWALGLLDSMKD------PALQ---HFTDDKIVVIKDKYPKARHHFLVCPRLKINNLKA----LKPEHLPLLNHMHEVGKRIIKESIGEEELKYQLGYHAIPSMSHLHLHAISRDFDSPCLKNKKHWNSFTTDYFVDSMELIAELEENGCVDTSGRNGEELLKQPLRCHVCKSQFANMPKLKGH 193
BLAST of mRNA_P-littoralis_Contig72.109.1 vs. uniprot
Match: A0A7S2SCH0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SCH0_9STRA) HSP 1 Score: 144 bits (363), Expect = 9.110e-33 Identity = 111/326 (34.05%), Postives = 152/326 (46.63%), Query Frame = 3
Query: 2058 VQLPLESPLRAQGVDTVIQVLGPNLDPRFPDCLTEEPDRARNLLRQCYDKTLAIFWEQALLAAAGGAVGNSATTGAAXXXXXXXXXXXXXXXXNSQAAAMAVGKGTSGTKRKRPLPEYKKGPPVPAKLSGYWKTVLLHFLKDQDGPRPPELQNEVYFEDDQCVVIYDGYPKSRYHLLLLPKPKFLDVESPSELRRDQHLSRLHQLHATGAAVAEALTQQGAGV--VRCGYHGIPSLKPLHLHIISQDFDSERMKKRSHWNSFTTDFFLEFS----WVEARLQE---LGSLELHNLRLKDLEATPLRCFR---CGRQMGNMTLLKNH 2999
V +P S L G V+ + PN++P P+ +++ AR L+ CY+ A + + S+ T A N+ A + VG T P Y P A G L L++ +P +V++ED+ C+V+YD YPK+R HLL+LPK FL + P + HL RL LH A+VA+ L GA V VRCGYH IPSL+PLH+H+ISQDFDS +K + HWNSFTTD+F+ WVE LG E + K++ A PL NM LK H
Sbjct: 143 VLVPRGSRLHLLGGLAVVFAVPPNMNPARPNPVSKT--EARTQLQACYEGVFAQYLKLLRSHFTPSTPPTSSATSVATVAGATLPTSD-----NAPAPTLFVGAAT--------YPTYASPGPT-ANFGGL--DALNRILRNPGAAKP-----QVFYEDECCLVVYDAYPKARTHLLVLPKASFLSLRRP-QFASAGHLPRLRHLHDRAASVAKWLQSSGAAVAPVRCGYHAIPSLEPLHIHVISQDFDSPCLKTKKHWNSFTTDYFVPCEVFARWVEGDKSADPWLG--ESTATKWKEMLAKPLEIISSSGASLTFKNMPALKEH 442
BLAST of mRNA_P-littoralis_Contig72.109.1 vs. uniprot
Match: D8RXR4_SELML (Macro domain-containing protein n=9 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RXR4_SELML) HSP 1 Score: 148 bits (373), Expect = 1.030e-32 Identity = 128/333 (38.44%), Postives = 175/333 (52.55%), Query Frame = 3
Query: 2058 VQLPLESPLRA-QGVDTVIQVLGPNLDPRFPDCLTEEPDRARNLLRQCYDKTLAIFWEQALLAAAGGAVGNSATTGAAXXXXXXXXXXXXXXXXNSQAAAMAVGKGT-------SGTKRKRPLPEYKKGPPVPAKLSGYWKTVLLHFLKDQDGPRPPELQNEVYFE-DDQCVVIYDGYPKSRYHLLLLPKPKFLDVESPSELRRDQHLSRLHQLHATGAAVAEALTQQGAGVV-RCGYHGIPSLKPLHLHIISQDFDSERMKKRSHWNSFTTDFFLEFSWVEARLQELGSLELHNLRL-KDLEATPLRCFRCGRQMGNMTLLKNHNRGCTAPL 3023
V LP SPLR +GV VI VLGPN++P+ P+C+ ++ + LLRQCY + F + A A+ XXXXXXXXXXXXXXX+S+ VGK T SGT + E K P W L D PE + V E D CVV+ D Y K++ HLL++ + LD S +++ ++HL L ++HA G A+ L ++ +V R GYH +PS++ +HLH+ISQDF+S +K + HWNSFTT FF + V A L+ G LE + K L + LRC RC N+ LK H C+ PL
Sbjct: 402 VPLPASSPLRTKEGVTHVIHVLGPNMNPQRPNCIADDYSQGCRLLRQCYAALFSTF-------------ASIAKGQASKXXXXXXXXXXXXXXXSSKKGKAEVGKVTGEEGNPASGTGTLKAAVEEKAATKKPVNWPA-WAQAL------HDVAFHPEKHSNVVLEVTDDCVVLPDLYAKAKKHLLVVSRKAGLD--SIADVT-NEHLPLLREMHAVGERWAKKLVEEDNTLVFRLGYHSVPSMRQVHLHVISQDFNSPGLKNKKHWNSFTTSFFRDSRDVIAELESRGKLEECTEEMEKRLLDSELRCHRCRCVQPNIPRLKAHVCSCSKPL 711 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig72.109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig72.109.1 >prot_P-littoralis_Contig72.109.1 ID=prot_P-littoralis_Contig72.109.1|Name=mRNA_P-littoralis_Contig72.109.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=340bp MVQLPLESPLRAQGVDTVIQVLGPNLDPRFPDCLTEEPDRARNLLRQCYDback to top mRNA from alignment at P-littoralis_Contig72:587943..595644+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig72.109.1 ID=mRNA_P-littoralis_Contig72.109.1|Name=mRNA_P-littoralis_Contig72.109.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7702bp|location=Sequence derived from alignment at P-littoralis_Contig72:587943..595644+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig72:587943..595644+ >mRNA_P-littoralis_Contig72.109.1 ID=mRNA_P-littoralis_Contig72.109.1|Name=mRNA_P-littoralis_Contig72.109.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1020bp|location=Sequence derived from alignment at P-littoralis_Contig72:587943..595644+ (Pylaiella littoralis U1_48)back to top |