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Homology
BLAST of mRNA_P-littoralis_Contig72.69.1 vs. uniprot
Match: D8LE73_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE73_ECTSI) HSP 1 Score: 138 bits (348), Expect = 3.570e-35 Identity = 67/79 (84.81%), Postives = 72/79 (91.14%), Query Frame = 1
Query: 487 MEELSEIIDAADSILLVGHGNAKSNIANVLAAALCERQPSLTDKIADVLRVDGKHITQNQLLKLGRRHLLHADDPRRPT 723
MEELS +I+ ADS+LLVGHGNAKSNIA VLA+ALCERQP LTDKI DVLRVDGKHITQNQLLKLGRRHL H +DPRRPT
Sbjct: 1 MEELSGVIEKADSVLLVGHGNAKSNIAEVLASALCERQPGLTDKIEDVLRVDGKHITQNQLLKLGRRHLTHTEDPRRPT 79
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 3194 |
| Hectar predicted targeting category | signal peptide |
| Exons | 7 |
| Cds size | 663 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680791497.0410194-UTR-P-littoralis_Contig72:362792..362855 | 1680791497.0410194-UTR-P-littoralis_Contig72:362792..362855 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig72 362793..362855 + |
| 1680791497.1457543-UTR-P-littoralis_Contig72:368140..370608 | 1680791497.1457543-UTR-P-littoralis_Contig72:368140..370608 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig72 368141..370608 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680791497.0592842-CDS-P-littoralis_Contig72:362855..362958 | 1680791497.0592842-CDS-P-littoralis_Contig72:362855..362958 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig72 362856..362958 + |
| 1680791497.0725267-CDS-P-littoralis_Contig72:363356..363457 | 1680791497.0725267-CDS-P-littoralis_Contig72:363356..363457 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig72 363357..363457 + |
| 1680791497.0827968-CDS-P-littoralis_Contig72:365627..365704 | 1680791497.0827968-CDS-P-littoralis_Contig72:365627..365704 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig72 365628..365704 + |
| 1680791497.0936928-CDS-P-littoralis_Contig72:366179..366279 | 1680791497.0936928-CDS-P-littoralis_Contig72:366179..366279 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig72 366180..366279 + |
| 1680791497.1087747-CDS-P-littoralis_Contig72:367046..367136 | 1680791497.1087747-CDS-P-littoralis_Contig72:367046..367136 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig72 367047..367136 + |
| 1680791497.1244724-CDS-P-littoralis_Contig72:367485..367563 | 1680791497.1244724-CDS-P-littoralis_Contig72:367485..367563 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig72 367486..367563 + |
| 1680791497.1349332-CDS-P-littoralis_Contig72:368026..368140 | 1680791497.1349332-CDS-P-littoralis_Contig72:368026..368140 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig72 368027..368140 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig72.69.1 >prot_P-littoralis_Contig72.69.1 ID=prot_P-littoralis_Contig72.69.1|Name=mRNA_P-littoralis_Contig72.69.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=221bp
MKGTMLTRTVVLASWCLLSNAFIPAVVNRGAGNSAAVSVERHQVARRANA VLPLQQLQGEADVATVETVPEGSLVLIEVTKKSARVFKSIAKGSVPQVVE PVDAWRVHETSNREKRSQGQGKHHAEKPDPVADESFLVKFYMEELSEIID AADSILLVGHGNAKSNIANVLAAALCERQPSLTDKIADVLRVDGKHITQN QLLKLGRRHLLHADDPRRPT* back to topmRNA from alignment at P-littoralis_Contig72:362793..370608+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig72.69.1 ID=mRNA_P-littoralis_Contig72.69.1|Name=mRNA_P-littoralis_Contig72.69.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7816bp|location=Sequence derived from alignment at P-littoralis_Contig72:362793..370608+ (Pylaiella littoralis U1_48) TCATCCTGCCTCTGCTAGTGCTCTACCTACCTCTGTTAACCTCACGGCAG
ATCTTCAACAAAGATGAAGGGCACTATGCTCACCAGGACGGTTGTGCTCG
CGTCCTGGTGCCTCCTGTCCAACGCATTCATCCCAGCAGTGGTGAACAGG
GGTGCAGGAAACTCAGGTAACAGATCACACCTACCCTTATCCGTAATCTT
CGACGGATGAAGGCAGGTGGGCGTTGAACCTGGGACGAAGACCGTTCGCA
CAACCAAGGAGGCTCCCGTTGCACCAAGTTTTCCTTTCTGCAAAGTTTTT
GGCTTCAGAGCCACAGAAAGCTTTGAGTTGCCGGGCTAAACAGCGCCCCC
GTCCTCGCTTCCCGCTACCTCGTTGGAGAGATCCCACTAAGATCGCTCAG
GCCTTCGGCTCCCCTCTCTGTTGTTGCAGTTTGAGTTTGTATGCGTAGTT
CAACATGCGCTCACGAAACAGCGAGCGTAGCAAGCATCTTCACACCCTGC
TGCTCCTGCTGCTGCCCGTGCGCCTCACTATTTCACTCGATGTCTCCATA
TCGTGTTCTTTCAGCAGCAGTCTCCGTCGAGCGGCACCAAGTTGCACGAC
GCGCTAATGCCGTACTCCCTCTCCAGCAGCTGCAGGGAGAAGCTGATGTT
GCAACAGTCGAAACGGTAAGCCCTTCCAACCTTTCAATCGAACCGACAGC
GGTAACGGCAAGTGGTACGGCTGTACTTGCTTGTAGTATTTGCGAAAAGG
ACGTCTTGCTCCCTCCCAAATTCGTCAGATGGAACAGCAAATCGAACAGG
TTGACAAGATTTGACCAACCGATGCGAAACACACGAAACGCTCATTCAGA
AATCGGGCCAGTGAAGAGCGTGCATATTGGGTCATGAAAAAGCCGGGGGG
AAGAAGTCTCCTTCAGTGGGAAAGCAACCCGTTGCCCCCAACACAGCAGC
GAGTGTAGTTACAGAACAACGGTACAAGTAGTCGTTAGCCTCGTTCCTCC
TTCTTTCTGGCTATCCTGGTAGAGTTGCAGCTCATTGCGCACAGGGCAAG
CAGCACAGCAAGTCGACGTGAGCCTCTCGCTCGTACTACTTCACAACAAA
CGTTACCAATGGCGCCATCCTCGCGTCCCCGAACAGCCTCACTCAAAAGC
AAGAATTCCGTTCGTTGCTGTAATGCCGCCAAAACGGCGCCTTGCATAGT
CGCGCCGCCAACATCGATTGGCAGATAAGTTTTGTAAAAAGATTTGTGCC
CAGCGTGCGTGCTGTCCGCTGCCTCGGAGGAGCCCGGCTGACCTACCGCT
ACGCTGCTTCCAAACTCTGACACGTCTGGCTGGACTAAATGCCAGACCCC
AATAAACTCCTGCTATGATCTGTGTACATTCGTTCGTACGTACGTACTTC
GAAGTAAGAGTTAACATATCATCTGTCATCGTTTGGTCAGGTAGAAATAA
AAAAAAAGGCGAACGCCAAAAAGCGGTATACCGCCTTGTTTCCGCGCCAC
AAAGCGGTACACCATACGGTATGTATTACACCTTGGTATCTGAGCCTCGT
TCGCGTCGCTGATTGGCCGATTAAGCATCGTACTGCTTTTAGGGACCAGC
AACCGGCGGTTTATCACATCTGCGCTTCTCAGGTCGGCCTTCACCGTTTT
TTGGCGTGGCCCGCACCGCTTTCTGGCGGGATATTCCCCAGGCCATTCGC
CCAACAGCCTTTGACACTTCCACATAATACGTCACAAACGATCAACCAAG
GGAGCCACGTCACATCGTACCCCCACACCCCACGCCGACCCCTGCAGGAT
AGTGCTCTGCTGTGCATGATAAAATATACAGCCGTATCTCCGTGTGTGGG
TATGTGTGTACGTGTGCGCGCTGCTTCTACACAGCATTTTTATCAGGTAG
CTTGTCTTTGAGTACTGCTTTTGCTGTAGTCAGGTTTGATGTGGTGCACC
CAAGTGAGACGTCGCCAGCGCGGTGGTGATCGCGTACGCCGCCATGGGCA
CATTGTAATGTGTGGTTGTGTGTGTGTCTGGTGGTTTGCGATCAATACGT
TTTAGTTTCACCCCTTGACAGCAGTAGTACCGTTATAGTGATCGCTTTGG
TCTTTTGTCACGCCCAGCAGAGCACTATCCCGCAGGGGTCGGTGTGGGGT
GTGGGGGTACGACATGCCGTGACTCCTTGGTTGATCGATTGTGACGTATG
ATGTGGAAGTATCAAAGGCTGTTGGGCGAATAGCCTGGGGAATATCCCGC
CAAAAAGCGGTGCGAGTCGCGCCAAAACACGGTGAAGGCCGACCCGAGAA
GCCCAGATGTGATATACCGCCGGCTGCTGGTGCCTGAAAGCAGTACGATG
CTTAATCGGCCAAGCAGCGACGCGAACGAGGCTCAAACACCGAGGTGTAA
TACGTACTGTATGGTTTACCGCTTTGTGGCGCGAAAACCAGGTGGTATAT
CGCTTTTTGGCGTTTGCCATCAAAAGATGAGAGAGTGATGCTGTGTTTGT
CACTCTGGCAAACCCTCCAATAAATTAGTTTTCCCTCAAGACAATTTTGG
CAGGAACGTTTCCCGAAACAAAGCAAACAAAGCTAGCATGTAAGGCACTT
TGTTCCCCAACTAAGAAACCTAGCCCGCTGGATGAGAGCCAGATTTTTTT
TCGCGTTTATAATGAGATAAGGCCTGCCCGTCATCGCTGTACAAGCGTCG
TCAAATTTGCTGCTGCGCCACTATCATCAGCCTACGACAGTGATGAACAG
GTCTTGGTAAACGTTGACACTGAAACGCAAATCCTTGAGACGGAATAAAC
CTCTCTCCCCCGCTCATTTTTTGTTTGATCTCCAGGTACCCGAGGGATCG
TTGGTGCTGATAGAGGTCACCAAGAAGAGCGCGAGAGTTTTCAAATCAAT
TGCAAAGGGCAGGTGAACCCCCTCAACATCTGCAATATATTTCACATGAA
CTCTGCGTCCATTTCACAATGCGTTGACGTCAACCGAAGAAGTGGAGCCG
TTGCAAGTCAGTGGACACAAATTGCAAGGCTCCATCTCTCTACTTTTCTT
GTACACCCCACCGTACCCATTGCAAACAATACCCTAATGTTCCTGTTGCT
GACCGTGCGCCACAGCAGTAAATCGTCTACTACACTACTCGCTGTTGTTC
GCATGCTGCCGCGCTGAGTTGCTTCAATTTTGCGTTGCTGACGAATGCTT
CCCCCTCCCCTTCCCTTGATTTTCTGCGGATTGGAACACACGAAAATGGT
ATGCCGCTTAGTTTGAGCTGCACTAGCGTGGAGACCAATGATGCCTCGAA
ACCGCCTACCCCCCCACCCCTCAATCTCTCGTAACCCCTCCCTTCCCTTT
GCTGATGACCTTTTTTGCTCCGAATATGACGTCATAGCGTCCCTCAGGTA
GTCGAGCCGGTAGACGCGTGGAGAGTGCATGAGACGTCTAATAGGGAGAA
GAGGAGCCAGGGACAGGGCAAGCATCACGCAGAAAAGGCAAGAGAAAGAA
AGACGGGGGGGGGGGGGGGGGGGGTTGCAGCCAGAATGGGTGTAAGATTT
CGCGCTGTTGTCATCGGGTGTCTAACCCCGACATCCCAAAATAGCGATGG
CATTGTATATAGGGTATGCTGGGTGGTGCTCACCCTCTGGCGAAACCCTG
AGCCTCTCGAGGGTCCGGTTCAAGTCTTGGCTGAACCCGCCGCATGTTGC
GATACCGCGGGTGTGTAGTTTTTTGCTATGTACTCCGTATTGGGTTTGGG
ATCTGTGGGGATCTCGCTCACTGGTACCCGTGCGTGAACCGAACGAGAGA
ATGCCCGACGGAGTGGTGGTGCAAGATGTGCGAAGCCACCCGCCTTGCAG
CTGAAATGAAAAAGTCAACTCACGGAAACACCGATGCATATTTTGTGGTG
TGTGCGAGTGCATCTACGACGCACACGATAATATTGCTATCGTATGCCAT
CACAAAACGATGTTCGGAACAAACCCAATTCGGACTTGTGTCGTCGATCT
CTAATCTTTTCGGTTGCGCAAGGTGCAGTTTCTGTACGGAACCCCGGGTT
ACAACTGTCGTTACCACGTACAGCATATCGTCTGTCCAAACGCCGATTGC
ATTTTTGAAATGACAAAAATGAAGCGTCTCTTTCCACAGCTGTTGTATGT
GTGTCCTTCCCATTGACATCGTCCGTATTGTTGTACTCGTTTGTCCTCAT
CCGTCGTTTCTCGACGTATCCAACTCGAAATCAAATCCGATCAAATCGAA
TCAGCCGGACCCAGTCGCAGATGAGTCGTTCTTGGTGAAGTTTTACATGG
AAGAGCTTTCGGAGATCATCGACGCTGCCGATTCTATCCTCCTGGTGAGA
TCTGTCATGCGACTAATTATAAAATGTATTCAGGTGACCTGTCACTTAGA
AAAACTATGCTATCCCACTCGGCAGCACTGCCAGCAAATCAGACGAGGCT
GAGCTTTTCGCGGTACGGCCGTTTTCCACATCTTTGGTGTATTAATGACA
GGTGCAGGTTATCTCACAACCATCGCGTGCACATCTGATACAAAGGTATA
CATTAGCACACATTTAAACATTAGGAACTCTTCTTTTAAGTGTCGAACGA
AAGCTGCCACTTCCAAACCCCTACTTCGAAACACTGCATTTAATTTTTTC
GTCTCGATCGTTCGTTGTCGTCGTTGGCGATGTCCTGTTGCAGGTGGGCC
ACGGCAACGCCAAGTCCAATATTGCCAATGTCCTAGCGGCGGCTCTCTGC
GAACGCCAACCCAGCCTCACGGTAAGCAGCGCCGTAAACTGGTGTGCAAT
TATGTTAAACATCGCCCCCCCCGAGCGCCCTGGAACTAATGGCTCCATTT
TTTATGTATTGTGTATGGTATGGTAGGGTATTTAGTATTTTCTCATTCCT
CGGGATACCGCCAAACGTTCAGCCCCTGTGGTGTCTCGCATCCACCGAAA
AACAGAGCCCTGTCTTTTTCAGAGCAGAGGGTACTCGAAATGGTTTGCTT
ATTTGTGAACTTGATGATGGTGTGAGAGGTACCAAACTTAGCCCATGATG
TGAGAGATTGGAAGGTGCTGTCAATGCTGTATACAACAATACCGAGGACG
CAGCTCCTCCGGATTGGCACAACTGCATAATGCTGTAGCACACAGCAGAC
CGACGCCCAACACGAAATCAGCATACCTAAAATCACTCATCATTACCCAT
GCCTGTCGATGTGCTGTTGCTACACACTGCGCAGGACAAGATAGCCGACG
TGCTACGCGTGGACGGCAAGCACATCACACAGAACCAGCTCCTGAAGCTG
GGGAGGAGGCATCTCCTCCACGCCGACGACCCCCGTAGGCCGACATAAAA
AAAAGGAGGCGATTCGACCGAGTCTACTAGCTTTTCTCTCAGCACTACTT
CGTACGAGGGCTGACTCGAGTTGCAGGGGTTCGTGTGGGGAGAGTATCAC
GGTAACCGTGGGGAATGATGGAATGATACGGCAGATGGCTCAGAGCACAA
CCGAGGCAAATGCATTGGCAGTTGCGTCGAGTGTGGGTATCGAGGGACAA
CAGAAAGGAATACCCATGTCACCCGTTTTATTACCGGCTCCGTAACTCGG
GAGTGTATGTATGATACGTACGAGTAGGGCGGTGAATGCAAGTTTGGAGC
GTCGGAAGGATTTCGACCGAAGGGTCCACTGACCAGACCTTCCGCGGCAA
GGAGGAGAGTGGCGAAAACTTTGGCTTCAGGCCCACAAGATAACATATTA
GAAATATTCAAGGGGCCTCTCGGTAATTTTCCCGTGCGGTAATTACTGCG
GTCATTACCGTGGGAATGGGATTTTTGGCGTTACCGTGCTTTTTCCATCA
TCCCAATCCCATACAATCAGCTACCGCAACAAAGCAAAAATCCCATTCTC
ATTACCCTGAAAAATAATTATCCCATTCCCCCGGGAAAAATTACCGTGAA
AATGTCGCAAATACCGCGATTTCTGCTTACCGCGGTAATAATTACCGCAA
CGTTTACAAAGTCCCATATACCGCACGGTATAGGTCTATGAATTACCGCA
ATCTCCGTCGATAGATACGAACGATAGGACAGGGCACGTCATCGCGCACT
TCTCCCAACTGCGAGCAGGCTGAGGGTTCGAACCTGCAGACAGATACTCC
GTATGTCTAATTTTTTACTTAGTTCAACTTGTTTTTCCTTTGTTATCATT
TTGTTATTTTTCTTCCTGTCCTTTTCCTTTTTACTACTTCAAGTATTTGA
TTTGTATTTAAGTACGGAGTATTGTTTTGGTGATTCACAACCACCACGCG
TCACTCAAGACACCACTAAACAATAACACGCCGTGGGTAGGCCGGCAGTC
ATGGAAGGAGGCGCCAATGTCGGAGGTGTCAGCAATGACGTGGGTGAAGG
ATCACTGGTTGTCACCGATCATGAGGCTATGATTCTGCTGTGTGCTGTTT
ACGATCATGTGTGTGTGTTGCCGTCCCTTTAATTGGACGCCACTCTGCAC
CTTTCGGGTAGATCGACGCTCCAACTGGGGTCACACAGGGGGGAGTCAAC
ACAGGAGTTTTTTTTTTTTCTCCACTTCCCTCTGCGGTGCTTGCTTTGTT
TGGTTGAGCTTTTATCGCGAGAAAGGGGACAGCAATCCCTTTCCCTCGTC
GATGGTACGATCGAATTTTGTTTACTCACGAATTGATCGCTCTCCACTTT
CACGCGCATTGTGAGAAAAAAATCATACGAAGTATAATATGGGTGTGTTG
AAACTGCCGTTTTGCAGACGTTACTGCTGTGCGGACATGTACTGTGTCGG
CATGTGTGCAGGGAAACAGTAGTTTCTGGGACGGGGGTGGGCTCTTTCAC
GGCTTTTGTTTGAAAAGTTTTGGTTTATTTGGTGGAGTAGTAGTCAACTC
GTGGTGATGAAGCTACTTCGTAGACAAGTATTAAGTACTTCGTAGTTGAC
ATGTTTCGGCCGTCTTCTGGTTATCGTCTTGTTGCTGTGAACGTGCTCCC
TTCGCCGCATCACACGCTGGTACTGTATGTACATAAACCCCGGCGGCTGA
TTACCGCGGAAACAATTACCGTAGAAAATTACCGCAAAATTACCGCGGTG
GTTGAGTGCCGCGGTAATGATTACCGCGGTGGCCAAGTACCGTGGAAAGA
TTACCGCGGATTTACCGCGGTCGTTGAGTACCGCGGTAGCAGTTACGGAG
GGACTCGATTACCGAACAAAAACCCCGTGGATTACCACGTTTGCTGACTA
CCGCGGTAAAACTTAACGACATCAAAAGTCGTTACCGAGAGGACCCCTGG
AAATATTGATGAATAGAAAACGAGACGCACTAGCTAGAAGTACCAGCAGG
GTTCCGCGTGTGATGGAACGCTTTAGTTTCTTTATTCGGGAAGGAAGCGG
TTGGAACAAGGGGCTTTCGGAGCCTGAAGGGGAGAAACAGGGAAGAGCTA
GGTCTTGAGTCTAGTCTCCTTCGAACCCTCAAACTTTTCTGAAGACGTGG
ACATGGTCAAATAGTCAAGTACGATTCCTTCAGGAGGAGTAGGACGGTGT
GGGTCAAGTTGGACTCGTTGGGGGATGGACAAAGTCGCACCCATCCGACT
CATCATTTAATTTTGAGTTCAATTCAGATAGAAATTGGAGTAGAAACGTA
GCGCGGAAGGGGCAGGGAGAGTTCAAGGAAGATTCAACATCTGCGTTGCA
GAGATTGCGTGGTCCTTGATTGGCTACATATCGCTTTGGGAGTTTGGAGG
TTTTCACAATGGAATGGAACCAAAGGGCGACGGGGTGACTGAGGTCTTTT
GCCTATCCAAGTCCAC back to topCoding sequence (CDS) from alignment at P-littoralis_Contig72:362793..370608+ >mRNA_P-littoralis_Contig72.69.1 ID=mRNA_P-littoralis_Contig72.69.1|Name=mRNA_P-littoralis_Contig72.69.1|organism=Pylaiella littoralis U1_48|type=CDS|length=663bp|location=Sequence derived from alignment at P-littoralis_Contig72:362793..370608+ (Pylaiella littoralis U1_48) ATGAAGGGCACTATGCTCACCAGGACGGTTGTGCTCGCGTCCTGGTGCCT CCTGTCCAACGCATTCATCCCAGCAGTGGTGAACAGGGGTGCAGGAAACT CAGCAGCAGTCTCCGTCGAGCGGCACCAAGTTGCACGACGCGCTAATGCC GTACTCCCTCTCCAGCAGCTGCAGGGAGAAGCTGATGTTGCAACAGTCGA AACGGTACCCGAGGGATCGTTGGTGCTGATAGAGGTCACCAAGAAGAGCG CGAGAGTTTTCAAATCAATTGCAAAGGGCAGCGTCCCTCAGGTAGTCGAG CCGGTAGACGCGTGGAGAGTGCATGAGACGTCTAATAGGGAGAAGAGGAG CCAGGGACAGGGCAAGCATCACGCAGAAAAGCCGGACCCAGTCGCAGATG AGTCGTTCTTGGTGAAGTTTTACATGGAAGAGCTTTCGGAGATCATCGAC GCTGCCGATTCTATCCTCCTGGTGGGCCACGGCAACGCCAAGTCCAATAT TGCCAATGTCCTAGCGGCGGCTCTCTGCGAACGCCAACCCAGCCTCACGG ACAAGATAGCCGACGTGCTACGCGTGGACGGCAAGCACATCACACAGAAC CAGCTCCTGAAGCTGGGGAGGAGGCATCTCCTCCACGCCGACGACCCCCG TAGGCCGACATAA back to top
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