mRNA_P-littoralis_Contig72.61.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig72.61.1
Unique NamemRNA_P-littoralis_Contig72.61.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig72.61.1 vs. uniprot
Match: A0A6H5L0C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0C2_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 6.270e-15
Identity = 51/109 (46.79%), Postives = 64/109 (58.72%), Query Frame = 1 
Query:    4 GASESG-TAGPGGVS--EEQDDGDFFVMKPSEEHG----EVALASLLGVWRVFQSQGYPYYLHEDSGHSQWEDPRDRKTVRPREPSTTAAADIAADVGYGSDRRSEAKG 309
            G S SG TAG   V   E + +GD FVM  S+E G      A A+L G+W+VFQS+GYPYYLHE SGH+QWEDPR+ + +R +E           D G   D R E+ G
Sbjct: 1045 GTSRSGATAGQEAVEFEESEKEGDSFVMVVSQEMGGRQTRDASAALAGLWKVFQSEGYPYYLHEASGHTQWEDPREVERLRVQE--------FLVDTGATGDVRGESLG 1145
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig72.61.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L0C2_9PHAE6.270e-1546.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig72contigP-littoralis_Contig72:309766..310077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size312
Hectar predicted targeting categoryother localisation
Exons1
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791496.063131-CDS-P-littoralis_Contig72:309765..3100771680791496.063131-CDS-P-littoralis_Contig72:309765..310077Pylaiella littoralis U1_48CDSP-littoralis_Contig72 309766..310077 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig72.61.1prot_P-littoralis_Contig72.61.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig72 309766..310077 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig72.61.1

>prot_P-littoralis_Contig72.61.1 ID=prot_P-littoralis_Contig72.61.1|Name=mRNA_P-littoralis_Contig72.61.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
VGASESGTAGPGGVSEEQDDGDFFVMKPSEEHGEVALASLLGVWRVFQSQ
GYPYYLHEDSGHSQWEDPRDRKTVRPREPSTTAAADIAADVGYGSDRRSE
AKGR
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mRNA from alignment at P-littoralis_Contig72:309766..310077+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig72.61.1 ID=mRNA_P-littoralis_Contig72.61.1|Name=mRNA_P-littoralis_Contig72.61.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig72:309766..310077+ (Pylaiella littoralis U1_48)
GTTGGGGCTTCGGAAAGTGGGACGGCGGGTCCAGGGGGAGTGTCGGAGGA
ACAAGATGACGGAGACTTTTTCGTGATGAAACCTTCCGAGGAACACGGAG
AGGTTGCTTTGGCATCGTTACTGGGGGTCTGGCGGGTGTTTCAGTCTCAG
GGGTACCCATATTACCTCCACGAAGATTCGGGACACTCGCAATGGGAAGA
CCCGAGAGATAGGAAAACCGTCCGTCCTCGAGAGCCCTCGACAACGGCAG
CAGCAGACATTGCAGCAGATGTGGGATATGGCTCGGATAGGAGGTCTGAG
GCAAAGGGACGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig72:309766..310077+

>mRNA_P-littoralis_Contig72.61.1 ID=mRNA_P-littoralis_Contig72.61.1|Name=mRNA_P-littoralis_Contig72.61.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig72:309766..310077+ (Pylaiella littoralis U1_48)
GTTGGGGCTTCGGAAAGTGGGACGGCGGGTCCAGGGGGAGTGTCGGAGGA
ACAAGATGACGGAGACTTTTTCGTGATGAAACCTTCCGAGGAACACGGAG
AGGTTGCTTTGGCATCGTTACTGGGGGTCTGGCGGGTGTTTCAGTCTCAG
GGGTACCCATATTACCTCCACGAAGATTCGGGACACTCGCAATGGGAAGA
CCCGAGAGATAGGAAAACCGTCCGTCCTCGAGAGCCCTCGACAACGGCAG
CAGCAGACATTGCAGCAGATGTGGGATATGGCTCGGATAGGAGGTCTGAG
GCAAAGGGACGT
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