mRNA_P-littoralis_Contig72.58.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig72.58.1 vs. uniprot
Match: D8LE80_ECTSI (60S ribosomal protein L41 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE80_ECTSI) HSP 1 Score: 151 bits (382), Expect = 8.180e-46 Identity = 93/100 (93.00%), Postives = 96/100 (96.00%), Query Frame = 1
Query: 1 MQIFVKTLAGASLPLEVSPATSITAVKAAVEAQDFLPVALMRLNHGTTQLTSGCLADAGIEEADTLTLLLDVKGGMRAKWRKKRXXXXXXXXXXXRQRAR 300
MQIFVKTL GASLPLEVSPATSITAVKAAVEAQ+FLP ALMRLNHG QL+SGCLADAGIEEADTLTLLLDV+GGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct: 1 MQIFVKTLGGASLPLEVSPATSITAVKAAVEAQEFLPAALMRLNHGNAQLSSGCLADAGIEEADTLTLLLDVRGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
BLAST of mRNA_P-littoralis_Contig72.58.1 vs. uniprot
Match: A0A836CFJ6_9STRA (60S ribosomal protein L41 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFJ6_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 8.680e-25 Identity = 72/101 (71.29%), Postives = 81/101 (80.20%), Query Frame = 1
Query: 1 MQIFVKTLAGASLPLEVSPATSITAVKAAVEAQDFLPVALMRLNHGTTQLTSGC-LADAGIEEADTLTLLLDVKGGMRAKWRKKRXXXXXXXXXXXRQRAR 300
MQIFVKTLA SL L+V+P +++ V A VE ++FLP AL RL+ G+TQL S L AGIEEADTLTLLL V GGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct: 1 MQIFVKTLARDSLVLDVAPTSTVGDVMAMVEDREFLPAALQRLSCGSTQLASTTTLEAAGIEEADTLTLLLSVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 101
BLAST of mRNA_P-littoralis_Contig72.58.1 vs. uniprot
Match: A0A7S4DB66_HETAK (60S ribosomal protein L41 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB66_HETAK) HSP 1 Score: 81.3 bits (199), Expect = 5.730e-18 Identity = 61/100 (61.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query: 1 MQIFVKTLAGASLPLEVSPATSITAVKAAVEAQDFLPVALMRLNHGTTQLTSGCLADAGIEEADTLTLLLDVKGGMRAKWRKKRXXXXXXXXXXXRQRAR 300
MQIFVK +G S VS S+ A VE Q FLP L+R + QLT+G LAD G+EE T+++LL V GGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct: 1 MQIFVKDPSGRSTAYTVSKDASVEGFNAQVENQTFLPADLVRFVCESKQLTTGSLADFGVEEGVTISMLLHVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
BLAST of mRNA_P-littoralis_Contig72.58.1 vs. uniprot
Match: A0A7S2HF29_9STRA (60S ribosomal protein L41 n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HF29_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 5.730e-18 Identity = 57/100 (57.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query: 1 MQIFVKTLAGASLPLEVSPATSITAVKAAVEAQDFLPVALMRLNHGTTQLTSGCLADAGIEEADTLTLLLDVKGGMRAKWRKKRXXXXXXXXXXXRQRAR 300
MQIF+ G S V S+ +VKA +E ++F+P L+RL +G T L G L G++E DT+T+LL+V GGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct: 1 MQIFIAGAQGPSTAYTVDSDASVESVKAMIENREFVPSELIRLVNGATALEGGSLLGNGVQEDDTITMLLEVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 100
BLAST of mRNA_P-littoralis_Contig72.58.1 vs. uniprot
Match: A0A7S0KA44_9STRA (60S ribosomal protein L41 n=2 Tax=Leptocylindrus TaxID=163515 RepID=A0A7S0KA44_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 3.370e-17 Identity = 61/101 (60.40%), Postives = 72/101 (71.29%), Query Frame = 1
Query: 1 MQIFVKTLAGASLPLEVSPATSITAVKAAVEAQDFLPVALMRL-NHGTTQLTSGCLADAGIEEADTLTLLLDVKGGMRAKWRKKRXXXXXXXXXXXRQRAR 300
MQIFV G++ EV TS+ ++K VE Q F+P L RL + +T LT G LA GIEE DT+TL+LDV+GGMR KWRKK XXXXXXXXXXXRQRAR
Sbjct: 1 MQIFVSYPQGSTRAYEVDSDTSVESLKLMVENQTFIPSGLCRLVDANSTTLTGGSLAAMGIEEDDTVTLMLDVEGGMRRKWRKKXXXXXXXXXXXXRQRAR 101
BLAST of mRNA_P-littoralis_Contig72.58.1 vs. uniprot
Match: A0A6A4FFT9_9STRA (60S ribosomal protein L41 n=9 Tax=Phytophthora TaxID=4783 RepID=A0A6A4FFT9_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 1.320e-16 Identity = 62/100 (62.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query: 1 MQIFVKTLAGASLPLEVSPATSITAVKAAVEAQDFLPVALMRLNHGTTQLTSGCLADAGIEEADTLTLLLDVKGGMRAKWRKKRXXXXXXXXXXXRQRAR 300
MQ+FV+TL+G+ L L V+ S+ +VK AVE +++P RL QLTSG LAD + E DTL +LLDV GGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct: 831 MQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYIPN--FRLVCAGKQLTSGSLADYAVGECDTLKMLLDVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 928
BLAST of mRNA_P-littoralis_Contig72.58.1 vs. uniprot
Match: A0A7S4T8Y9_9STRA (60S ribosomal protein L41 n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T8Y9_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 1.370e-16 Identity = 57/100 (57.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query: 1 MQIFVKTLAGASLPLEVSPATSITAVKAAVEAQDFLPVALMRLNHGTTQLTSGCLADAGIEEADTLTLLLDVKGGMRAKWRKKRXXXXXXXXXXXRQRAR 300
MQIF+ G S V SI +VKA +E ++F+P L+RL +G + L G L G++E DT+T+LL+V GGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct: 89 MQIFIAGAQGPSTAYTVDSDASIESVKAMIENKEFVPADLIRLVNGASVLEGGSLLGNGVQEDDTITMLLEVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 188
BLAST of mRNA_P-littoralis_Contig72.58.1 vs. uniprot
Match: A0A7R9WJP8_9STRA (60S ribosomal protein L41 n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WJP8_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 2.170e-16 Identity = 56/100 (56.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query: 1 MQIFVKTLAGASLPLEVSPATSITAVKAAVEAQDFLPVALMRLNHGTTQLTSGCLADAGIEEADTLTLLLDVKGGMRAKWRKKRXXXXXXXXXXXRQRAR 300
MQIF+ + A A V A SI +VKA +E ++F+P L+RL +G T L G LA G+E+ DT+T++L+V+GGMR KW+KKR XXXXXXXXXXRQRAR
Sbjct: 25 MQIFIGSTAYA-----VDAADSIESVKAQIENREFVPAHLIRLVNGATPLEGGTLAGNGVEDEDTITMMLEVQGGMRRKWKKKRMXXXXXXXXXXRQRAR 119
BLAST of mRNA_P-littoralis_Contig72.58.1 vs. uniprot
Match: A0A6G0NVC9_9STRA (60S ribosomal protein L41 n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0NVC9_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 3.330e-16 Identity = 62/100 (62.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query: 1 MQIFVKTLAGASLPLEVSPATSITAVKAAVEAQDFLPVALMRLNHGTTQLTSGCLADAGIEEADTLTLLLDVKGGMRAKWRKKRXXXXXXXXXXXRQRAR 300
MQ+FV+TL+G+ L L V+ S+ +VK AVE +++P RL QLTSG LAD + E DTL +LLDV GGMRAKWRKKRXXXXXXXXXXXRQRAR
Sbjct: 710 MQLFVETLSGSPLTLSVAADASVASVKQAVEDVEYIPN--FRLVCAGKQLTSGSLADYVVGECDTLKMLLDVNGGMRAKWRKKRXXXXXXXXXXXRQRAR 807
BLAST of mRNA_P-littoralis_Contig72.58.1 vs. uniprot
Match: A0A7S3Y2M4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2M4_HETAK) HSP 1 Score: 77.4 bits (189), Expect = 4.700e-16 Identity = 45/84 (53.57%), Postives = 54/84 (64.29%), Query Frame = 1
Query: 1 MQIFVKTLAGASLPLEVSPATSITAVKAAVEAQDFLPVALMRLNHGTTQLTSGCLADAGIEEADTLTLLLDVKGGMRAKWRKKR 252
MQIFVK +G S VS S+ A VE Q FLP L+R + QLT+G LAD G+EE T+++LL V GGMRAKWRKKR
Sbjct: 1 MQIFVKDPSGRSTAYTVSKDASVEGFNAQVENQTFLPADLVRFVCESKQLTTGSLADFGVEEGVTISMLLHVNGGMRAKWRKKR 84 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig72.58.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig72.58.1 >prot_P-littoralis_Contig72.58.1 ID=prot_P-littoralis_Contig72.58.1|Name=mRNA_P-littoralis_Contig72.58.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp MQIFVKTLAGASLPLEVSPATSITAVKAAVEAQDFLPVALMRLNHGTTQLback to top mRNA from alignment at P-littoralis_Contig72:288658..288960- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig72.58.1 ID=mRNA_P-littoralis_Contig72.58.1|Name=mRNA_P-littoralis_Contig72.58.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig72:288658..288960- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig72:288658..288960- >mRNA_P-littoralis_Contig72.58.1 ID=mRNA_P-littoralis_Contig72.58.1|Name=mRNA_P-littoralis_Contig72.58.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig72:288658..288960- (Pylaiella littoralis U1_48)back to top |