mRNA_P-littoralis_Contig72.55.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig72.55.1
Unique NamemRNA_P-littoralis_Contig72.55.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig72.55.1 vs. uniprot
Match: A0A6H5L0M8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M8_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 2.380e-51
Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:   40 MAMRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPPGAAGATSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSN 315
            MAMRGVGK TR+TYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTP+AEPGAAGPPGA GA+SGAAKDPDFGPAPVGYVAGRGRGMGDLAKSN
Sbjct:    1 MAMRGVGKTTRSTYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPLAEPGAAGPPGAPGASSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSN 92
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BLAST of mRNA_P-littoralis_Contig72.55.1 vs. uniprot
Match: A0A6H5KUU3_9PHAE (PRP1_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU3_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.110e-20
Identity = 47/59 (79.66%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:   88 GAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPPGAAGATSGAAKDPDFGPAPV 264
            GAPSN+VAGLGRGAVGFT RSDIGPART IAE GA GP GA GA+ G +KDPDFGP PV
Sbjct:   16 GAPSNHVAGLGRGAVGFTNRSDIGPARTTIAELGATGPRGATGASCGVSKDPDFGPVPV 74
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BLAST of mRNA_P-littoralis_Contig72.55.1 vs. uniprot
Match: A0A7S0XAM5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XAM5_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.070e-18
Identity = 52/89 (58.43%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:   46 MRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPPGAAGATSGAAKDPDFGPAPVGYVAGRGRGMGDLAKS 312
            M GVG ++ +T++  APS YVAG+GRGAVGFTTRSDIGPAR        A   G           P+FG APVGYVAGRGRGMG+LAKS
Sbjct:    1 MSGVGPKSVSTFSTTAPSYYVAGIGRGAVGFTTRSDIGPARPAFDPTNPAASTGLLPTVVNPFVTPNFGQAPVGYVAGRGRGMGELAKS 89
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BLAST of mRNA_P-littoralis_Contig72.55.1 vs. uniprot
Match: A0A7S3MCI9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MCI9_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 8.530e-17
Identity = 51/85 (60.00%), Postives = 56/85 (65.88%), Query Frame = 1 
Query:   55 VGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPPGAAGATSGAAKDPDFGPAPVGYVAGRGRGMGDLAK 309
            VG ++  TY    PSNYVAG+GRGA+GFTTRSDIGPAR          PP           DP FGPAPVGYVAGRGRGMGDLA+
Sbjct:    1 VGPRSANTYTVAPPSNYVAGVGRGAMGFTTRSDIGPARP--------APPMGGAXXXXXXPDP-FGPAPVGYVAGRGRGMGDLAR 76
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BLAST of mRNA_P-littoralis_Contig72.55.1 vs. uniprot
Match: A0A4D9D6Q2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6Q2_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.630e-15
Identity = 47/91 (51.65%), Postives = 54/91 (59.34%), Query Frame = 1 
Query:   46 MRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPPGAAGATSGAAKDPDFGPAPVGYVAGRGRGMGDLAKSNS 318
            M G G Q   TY+ GAP  Y AG GRGA+GFTTRSDIGPAR+ + E                    +FG  P GYVAGRGRGMGDLA+S +
Sbjct:    1 MSGRGVQRLKTYDKGAPQGYQAGFGRGAIGFTTRSDIGPARSSVPEV-------------------NFGQPPPGYVAGRGRGMGDLARSQA 72
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BLAST of mRNA_P-littoralis_Contig72.55.1 vs. uniprot
Match: A0A7S4D952_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D952_HETAK)

HSP 1 Score: 75.5 bits (184), Expect = 1.470e-14
Identity = 51/89 (57.30%), Postives = 55/89 (61.80%), Query Frame = 1 
Query:   52 GVGKQTRATY-NAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPPGAAGATSGAAKDP--DFGPAPVGYVAGRGRGMGDLAK 309
            GVG +T  T+ N   PSNYVAGLGRGAVGFTTRSDIGPART   + GAA            A+ P  DFG A  GYVAG GRG   L K
Sbjct:    3 GVGARTANTFGNVAVPSNYVAGLGRGAVGFTTRSDIGPARTAAPQSGAA-----------PAQPPVADFGAAXXGYVAGAGRGASILGK 80
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BLAST of mRNA_P-littoralis_Contig72.55.1 vs. uniprot
Match: A0A5D6YDN0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YDN0_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.820e-13
Identity = 48/82 (58.54%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:   46 MRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPPGAAGATSGAAKDPDFGPAPVGYVAGRGRG 291
            M G+G++ R TY +GAP+NYV GLGRGAVGFTTRSDIGPAR+P+   G A   GA  A    A  P   PAP    AGRGRG
Sbjct:    1 MSGLGQRLRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARSPLTPEGLAADGGALRAAPTTAGPPGP-PAPFLPGAGRGRG 81
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BLAST of mRNA_P-littoralis_Contig72.55.1 vs. uniprot
Match: K3WCC0_GLOUD (PRP1_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCC0_GLOUD)

HSP 1 Score: 72.4 bits (176), Expect = 1.330e-12
Identity = 45/83 (54.22%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:   46 MRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPGAAGPPGAAGATSGAAKDPDFGPAPVGYVAGRGRGM 294
            M G+G++ R TY +GAP+NYV GLGRGAVGFTTRSDIGPAR P+A  G+  P G A         P     P    AGRGRG+
Sbjct:    1 MSGLGQRQRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARAPMAPDGSGAPVGGA---------PGXXAPPYLPGAGRGRGV 74
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BLAST of mRNA_P-littoralis_Contig72.55.1 vs. uniprot
Match: A0A2P4Y3Q2_9STRA (Pre-mRNA-processing factor (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y3Q2_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.780e-11
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:   46 MRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPG 189
            M G+G++ R TY +GAP+NYV GLGRGAVGFTTRSDIGPAR P+ + G
Sbjct:    1 MSGLGQRVRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARAPMTQDG 48
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BLAST of mRNA_P-littoralis_Contig72.55.1 vs. uniprot
Match: H3GKT1_PHYRM (PRP1_N domain-containing protein n=24 Tax=Peronosporaceae TaxID=4777 RepID=H3GKT1_PHYRM)

HSP 1 Score: 68.9 bits (167), Expect = 2.180e-11
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:   46 MRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRSDIGPARTPIAEPG 189
            M G+G++ R TY +GAP+NYV GLGRGAVGFTTRSDIGPAR P+ + G
Sbjct:    1 MSGLGQRVRNTYASGAPANYVPGLGRGAVGFTTRSDIGPARAPMTQDG 48
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig72.55.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0M8_9PHAE2.380e-5194.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUU3_9PHAE1.110e-2079.66PRP1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S0XAM5_9STRA4.070e-1858.43Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S3MCI9_9STRA8.530e-1760.00Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A4D9D6Q2_9STRA2.630e-1551.65Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S4D952_HETAK1.470e-1457.30Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A5D6YDN0_9STRA3.820e-1358.54Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3WCC0_GLOUD1.330e-1254.22PRP1_N domain-containing protein n=1 Tax=Globispor... [more]
A0A2P4Y3Q2_9STRA1.780e-1168.75Pre-mRNA-processing factor (Fragment) n=1 Tax=Phyt... [more]
H3GKT1_PHYRM2.180e-1168.75PRP1_N domain-containing protein n=24 Tax=Peronosp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig72contigP-littoralis_Contig72:271903..274470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog65071.PYU1_T002611
PFAMsPRP1_N
Model size319
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.18e-13
EggNOG OGsKOG0495@1|root,KOG0495@2759|Eukaryota,1MA7B@121069|Pythiales
Descriptionfactor. Source PGD
Cds size318
COG categoryA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791495.5257797-CDS-P-littoralis_Contig72:271902..2719901680791495.5257797-CDS-P-littoralis_Contig72:271902..271990Pylaiella littoralis U1_48CDSP-littoralis_Contig72 271903..271990 +
1680791495.544116-CDS-P-littoralis_Contig72:274239..2744691680791495.544116-CDS-P-littoralis_Contig72:274239..274469Pylaiella littoralis U1_48CDSP-littoralis_Contig72 274240..274469 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig72.55.1prot_P-littoralis_Contig72.55.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig72 271903..274469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig72.55.1

>prot_P-littoralis_Contig72.55.1 ID=prot_P-littoralis_Contig72.55.1|Name=mRNA_P-littoralis_Contig72.55.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=106bp
STTATPTEEGAATMAMRGVGKQTRATYNAGAPSNYVAGLGRGAVGFTTRS
DIGPARTPIAEPGAAGPPGAAGATSGAAKDPDFGPAPVGYVAGRGRGMGD
LAKSNS
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mRNA from alignment at P-littoralis_Contig72:271903..274470+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig72.55.1 ID=mRNA_P-littoralis_Contig72.55.1|Name=mRNA_P-littoralis_Contig72.55.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2568bp|location=Sequence derived from alignment at P-littoralis_Contig72:271903..274470+ (Pylaiella littoralis U1_48)
AGCACAACAGCGACGCCGACTGAAGAGGGAGCAGCAACCATGGCGATGCG
AGGGGTGGGAAAGCAAACCCGTGCAACTTACAATGCCGGTGAGACGGAAA
AGAAGGAAGTACTTGTTGCACACGGAAAAATACAAAACTCACCCTCCGCT
CTTCGGTATCGGCTATAACTCTTTCACGAATAGACAGTCGAATCGAGATA
CCACTGCCTTGCTAGCCGTGCGGTGAGCTCAAACACTGCTGTAGTACTGC
TGTTGTAGTCTAGGTGCACACGCTGCACCTGTCGTATATTGACCAACCAA
CGCCCAGATACTACAGTTTGTGCATTCAGCGGTTTGCAATCATCATTAGT
TAATGTTGGAATTATTTTTCCGTGTCGAGGCGTTGAACGTTCGGGAGAAG
AGAGGCACACGACTACTATTATATTATTATAGAGCAGCGGCCGGTTTGAT
CCACATCACTTTGATCCCCTGGTTGCCGGTCTCTCCGGCACGATCGGCGA
GATAAAACTTGGTGTGAACCAAACTGAACGTAGTCGATACTAGGACATAC
ACGAGAGACGACGCCAGGGATGTCCTGTACTTCATTATTTAGTGAAGTTA
CGAGTCTGCTGTGCAGTTGCGGCTGCGGCATGCCTTCCATGGTTACGTAC
GTACAGCATATCGTGTGCTCGTGAATGTGTACCTGCTTGACACTTGCTGC
TGCTGTGTGAGGATGATCTTTGCACTATTCTTTCTGGTGTACTACTCTCC
TTCTCTCCCTTTCTCCCTTGCCAAAAGGTGGTCCTCCTCTTCGATCTCTA
TGCAAGAAAAGTAGCAGCGCAGCTGCAATGACAACGGGAGACACCACACA
CCCCCCCGTATAGACCGATTGTCATACATGTGCTCTGAATTCTGAGTGAC
TCCCAATCGAAGAGGGTTTCCACATCAAACGGTCCCTATTCGGAAAGTCC
TTTTTGCAAGATGGTTCCACTGCCACAATTTCGGAGACCGACACTCGTTT
TGCTGCGAAGAAATCGTTTATTTTTTATTTTCTTACAAACGCATATCATA
CGATAGATGTACTGCTGTATCACATTCTTTGTGTTCGTTGCTAATCTTCT
CCAGACCCTCGTCTGGAGAGAGGCGAACACATGTTGATGTGTTTGTAAGA
ATAAAAAAACATATCAACAGTGTTTCCGTCACGCTCCAGACGAGGATCTG
CATTAGATTAAAACTAGTCCCAAGGGGTCCCGTGTGGCGGCATCCTTTGC
GACGCCACGATAATGTCTGCTGTACGATATCGGGTGACGCCATACCCATC
CCGGGTGAGGGTACTTCGGGACACCCTTGCCTTACAAATCAGAAGAACTC
GTCAATTCATCTCCCTCCGGGGTGTAGCATCCCCCTCCCCTGTGTTGGGG
AGTTTTGTTTTGCGCAGAAAATCACAAGTCAACCGAGCGGATAACCTTGA
GATTTGAAGATCGCTGCAGATGCATCGAGCACAGCAGAGAGTGACAATAG
TCGCAACACACGGTTTGGGCATGCGAGACAGAACCGTTTGGTGATGGCGG
GAGTCGTATCGTATTCCACGGTAGTTGCCGTGAGGCCAGAGTCTTCGGTG
TGCTGGGATTGCTGGATCTGCTGGAATCGAAAGTACGATGCCGTGCGAAG
GCAACCGAGAGTTGGAAAGCACGAAAACACAGCATGCAGCAAAGTGTGCG
GTTACCGTTTTTGTGGTACGTCGCTGTTTTTGTTGTCGCCGTTGGAAAAC
ACAAAAACACGACCTGCAGCAAGTGTGCGGTTGCCGTTTTTTTCGTACGT
TATGCCGAATAAAAGAGCGGCTCCTGATTAGGTACCGTCACCAGGAGTTA
CCCGCTGGAGATAATATCCAGCTACTTTGACATCAAACGAGCTACGGAGG
AAACTATTTCATACCGTATACCGATATGGCTGACACTGCCGTCCAATCTC
TTATTTTTTAATTTTTAATTTTCCAACACCGTCCTCTGGTACTGGTCAAT
TCGACCACGAACGCAAATGTTCACTGAGCGTCTTCTCGATTTTTCCTCCT
CCTCCTCCTCTTCGAAGCCAAAAACAACATAGCACGAAACCCCGCTCTGG
TGCACAGCTGGATAGACCAAGGAACACCGTATTGCGAGGACAATGCGTCG
AGCACCGCCGGCAACTTCGTCACGATAGTGATTGAACACCGACTCTGTAT
CTGACGCAAAGTCCCCCTTTTTTATCCTTGTAAAAATATACTCCGTATGT
ATGTAAACAAATGAAAGCATCAAATCGCCACTCACATCTCCCCCCCCCCC
GCCGCCACCAATCTTACGTAACGAACAAAACACACAGGCGCCCCTTCGAA
CTACGTCGCCGGTCTCGGCCGCGGTGCCGTCGGCTTCACCACCCGTTCCG
ACATCGGACCCGCCCGCACCCCCATCGCGGAGCCGGGGGCCGCCGGCCCC
CCCGGCGCGGCCGGTGCAACCTCGGGCGCCGCCAAAGACCCCGACTTCGG
GCCCGCGCCGGTGGGGTATGTTGCCGGCCGCGGGCGCGGGATGGGCGATC
TCGCCAAGTCCAATAGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig72:271903..274470+

>mRNA_P-littoralis_Contig72.55.1 ID=mRNA_P-littoralis_Contig72.55.1|Name=mRNA_P-littoralis_Contig72.55.1|organism=Pylaiella littoralis U1_48|type=CDS|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig72:271903..274470+ (Pylaiella littoralis U1_48)
AGCACAACAGCGACGCCGACTGAAGAGGGAGCAGCAACCATGGCGATGCG
AGGGGTGGGAAAGCAAACCCGTGCAACTTACAATGCCGGCGCCCCTTCGA
ACTACGTCGCCGGTCTCGGCCGCGGTGCCGTCGGCTTCACCACCCGTTCC
GACATCGGACCCGCCCGCACCCCCATCGCGGAGCCGGGGGCCGCCGGCCC
CCCCGGCGCGGCCGGTGCAACCTCGGGCGCCGCCAAAGACCCCGACTTCG
GGCCCGCGCCGGTGGGGTATGTTGCCGGCCGCGGGCGCGGGATGGGCGAT
CTCGCCAAGTCCAATAGC
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