mRNA_P-littoralis_Contig72.45.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig72.45.1
Unique NamemRNA_P-littoralis_Contig72.45.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig72.45.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 5.270e-20
Identity = 51/126 (40.48%), Postives = 84/126 (66.67%), Query Frame = 2 
Query:    2 QVTVDAFGGIVGAEHCEPSNIYISATVDQGGNMINAFRAMGVPTLICSGHRLNSAVQWATGIGGSFKSDGSGTCKNRLGHELVRKATAMVGV-----CNNDEFKKVQEELEEMCKLLELIRRNDTR 364
            ++T + F   +G E  EP +++++ TVDQGGN++NA +A+GVP + C+ HR+N+AV WA GI G+ +       +N++  +L++K  A+VGV      NND+ K++Q   E++  + +LIRRNDTR
Sbjct:  340 ELTREYFADFMG-EDVEPKDVFLAFTVDQGGNVVNACKALGVPVVKCNCHRVNTAVLWALGIAGNGR-------RNKVMGDLMKKLAALVGVFSHSAVNNDKLKELQRLEEDLHAVYQLIRRNDTR 457
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BLAST of mRNA_P-littoralis_Contig72.45.1 vs. uniprot
Match: D7G7X8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X8_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 2.410e-16
Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 2 
Query:    2 QVTVDAFGGIVGAEHCEPSNIYISATVDQGGNMINAFRAMGVPTLICSGHRLNSAVQWATGIGGSFKSDGSGTCKNRLGHELVRKATAMVGV-----CNNDEFKKVQE 310
            Q+T   F  IV A    PS++Y++ATVDQG N++NA +++G+PT+ C GHR++S+V W  G+ GS       T KN+ G  LV +  A  G+      N+D F+ VQE
Sbjct:   82 QLTTGVFQSIVPA--VVPSDVYVAATVDQGLNVVNACKSLGIPTIPCLGHRIHSSVMWGIGVSGSVA-----TQKNKKGRVLVGRCAACAGMFSHSCTNSDAFRLVQE 182
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig72.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JRT6_9PHAE5.270e-2040.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7X8_ECTSI2.410e-1641.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig72contigP-littoralis_Contig72:237379..237874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size481
Hectar predicted targeting categoryother localisation
Exons2
Cds size270
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791495.186018-UTR-P-littoralis_Contig72:237378..2374751680791495.186018-UTR-P-littoralis_Contig72:237378..237475Pylaiella littoralis U1_48UTRP-littoralis_Contig72 237379..237475 +
1680791495.2232766-UTR-P-littoralis_Contig72:237760..2378741680791495.2232766-UTR-P-littoralis_Contig72:237760..237874Pylaiella littoralis U1_48UTRP-littoralis_Contig72 237761..237874 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791495.198315-CDS-P-littoralis_Contig72:237475..2376511680791495.198315-CDS-P-littoralis_Contig72:237475..237651Pylaiella littoralis U1_48CDSP-littoralis_Contig72 237476..237651 +
1680791495.2135491-CDS-P-littoralis_Contig72:237666..2377601680791495.2135491-CDS-P-littoralis_Contig72:237666..237760Pylaiella littoralis U1_48CDSP-littoralis_Contig72 237667..237760 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig72.45.1prot_P-littoralis_Contig72.45.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig72 237476..237760 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig72.45.1

>prot_P-littoralis_Contig72.45.1 ID=prot_P-littoralis_Contig72.45.1|Name=mRNA_P-littoralis_Contig72.45.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=90bp
MINAFRAMGVPTLICSGHRLNSAVQWATGIGGSFKSDGSGTCKNRLGHEL
VRKATAMVGVCNNDEFKKVQEELEEMCKLLELIRRNDTR*
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mRNA from alignment at P-littoralis_Contig72:237379..237874+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig72.45.1 ID=mRNA_P-littoralis_Contig72.45.1|Name=mRNA_P-littoralis_Contig72.45.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=496bp|location=Sequence derived from alignment at P-littoralis_Contig72:237379..237874+ (Pylaiella littoralis U1_48)
ACAGGTTACCGTTGACGCTTTTGGCGGTATCGTAGGAGCCGAGCACTGCG
AGCCATCAAACATCTACATCTCTGCCACGGTCGACCAAGGGGGCAACATG
ATCAACGCGTTCCGGGCCATGGGTGTTCCCACGTTGATCTGTTCTGGGCA
CCGGCTGAACTCGGCGGTGCAGTGGGCAACGGGCATCGGCGGGTCTTTCA
AATCGGACGGCAGCGGGACGTGCAAGAACCGTCTGGGCCATGAACTTGTG
AGGAAGGCCACCGCCATGGTTGGGCACTGCAGCCACAGTGTGTGCAACAA
CGACGAGTTCAAGAAAGTGCAAGAAGAGCTTGAAGAGATGTGCAAGCTCT
TGGAGCTCATCCGTCGGAACGACACAAGGTGAGAGGTGTGCGCGAATGAT
GTGCGCAGGTTGTATTCGGGATTTATTTTGTGTGTTCGTGTCGTCTCGGA
CAACAGAAAGGTCGAGGCAGGCGCCGCCGCCCGCCAAGTATGCAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig72:237379..237874+

>mRNA_P-littoralis_Contig72.45.1 ID=mRNA_P-littoralis_Contig72.45.1|Name=mRNA_P-littoralis_Contig72.45.1|organism=Pylaiella littoralis U1_48|type=CDS|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig72:237379..237874+ (Pylaiella littoralis U1_48)
ATGATCAACGCGTTCCGGGCCATGGGTGTTCCCACGTTGATCTGTTCTGG
GCACCGGCTGAACTCGGCGGTGCAGTGGGCAACGGGCATCGGCGGGTCTT
TCAAATCGGACGGCAGCGGGACGTGCAAGAACCGTCTGGGCCATGAACTT
GTGAGGAAGGCCACCGCCATGGTTGGTGTGTGCAACAACGACGAGTTCAA
GAAAGTGCAAGAAGAGCTTGAAGAGATGTGCAAGCTCTTGGAGCTCATCC
GTCGGAACGACACAAGGTGA
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