mRNA_P-littoralis_Contig1181.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1181.2.1
Unique NamemRNA_P-littoralis_Contig1181.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1181.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1181contigP-littoralis_Contig1181:5547..6032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size486
Hectar predicted targeting categorysignal peptide
Exons1
Cds size423
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789495.754241-CDS-P-littoralis_Contig1181:5546..59691680789495.754241-CDS-P-littoralis_Contig1181:5546..5969Pylaiella littoralis U1_48CDSP-littoralis_Contig1181 5547..5969 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789495.7671175-UTR-P-littoralis_Contig1181:5969..60321680789495.7671175-UTR-P-littoralis_Contig1181:5969..6032Pylaiella littoralis U1_48UTRP-littoralis_Contig1181 5970..6032 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1181.2.1prot_P-littoralis_Contig1181.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1181 5547..5969 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1181.2.1

>prot_P-littoralis_Contig1181.2.1 ID=prot_P-littoralis_Contig1181.2.1|Name=mRNA_P-littoralis_Contig1181.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=141bp
MSGSSVHLGQTHVFFSVGRIGIIKLWLFAVWVFLRRVFPLEQGVVSCCPW
VLRSTWYGVPGTGYFEVPILCNYCCKTFVRSYQTCRSCCNIIRHHEERCS
GTNFEVFLRSRAIVPPLVILVTHGKVTCLWVPAIFCAARH*
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mRNA from alignment at P-littoralis_Contig1181:5547..6032-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1181.2.1 ID=mRNA_P-littoralis_Contig1181.2.1|Name=mRNA_P-littoralis_Contig1181.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=486bp|location=Sequence derived from alignment at P-littoralis_Contig1181:5547..6032- (Pylaiella littoralis U1_48)
TTCGATTTTTGGCGTGTGGTTTGAGAGAGGGTGTTTTTTGTGGGGGGGTA
GGGAAAATGTTGAATGTCAGGGTCGAGTGTCCATCTCGGGCAAACACATG
TATTTTTCAGTGTCGGCCGGATAGGAATAATAAAGCTCTGGCTATTTGCG
GTTTGGGTGTTCTTGCGACGCGTTTTTCCGCTGGAGCAGGGGGTCGTGTC
GTGCTGTCCTTGGGTCTTGCGAAGTACCTGGTACGGAGTACCTGGTACGG
GGTACTTCGAAGTACCCATATTGTGCAACTACTGCTGTAAAACGTTTGTG
AGGTCCTACCAAACTTGCCGAAGTTGTTGCAATATCATAAGACACCACGA
AGAAAGGTGTTCCGGAACGAATTTCGAAGTGTTTTTGAGAAGTCGTGCGA
TAGTCCCTCCCTTGGTAATACTCGTTACTCATGGAAAAGTGACGTGCCTG
TGGGTGCCGGCCATCTTTTGCGCCGCACGGCACTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1181:5547..6032-

>mRNA_P-littoralis_Contig1181.2.1 ID=mRNA_P-littoralis_Contig1181.2.1|Name=mRNA_P-littoralis_Contig1181.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=423bp|location=Sequence derived from alignment at P-littoralis_Contig1181:5547..6032- (Pylaiella littoralis U1_48)
ATGTCAGGGTCGAGTGTCCATCTCGGGCAAACACATGTATTTTTCAGTGT
CGGCCGGATAGGAATAATAAAGCTCTGGCTATTTGCGGTTTGGGTGTTCT
TGCGACGCGTTTTTCCGCTGGAGCAGGGGGTCGTGTCGTGCTGTCCTTGG
GTCTTGCGAAGTACCTGGTACGGAGTACCTGGTACGGGGTACTTCGAAGT
ACCCATATTGTGCAACTACTGCTGTAAAACGTTTGTGAGGTCCTACCAAA
CTTGCCGAAGTTGTTGCAATATCATAAGACACCACGAAGAAAGGTGTTCC
GGAACGAATTTCGAAGTGTTTTTGAGAAGTCGTGCGATAGTCCCTCCCTT
GGTAATACTCGTTACTCATGGAAAAGTGACGTGCCTGTGGGTGCCGGCCA
TCTTTTGCGCCGCACGGCACTGA
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