mRNA_P-littoralis_Contig72.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig72.31.1
Unique NamemRNA_P-littoralis_Contig72.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig72.31.1 vs. uniprot
Match: D8LE89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE89_ECTSI)

HSP 1 Score: 303 bits (776), Expect = 1.110e-89
Identity = 253/395 (64.05%), Postives = 283/395 (71.65%), Query Frame = 2 
Query:  257 WTREMTSGTAVVRQRFLPPHAGGVPTTLHAGSPIESVIAQGESVSSPPPPSTAPAQQQ------RVQETGA-SQNWLQGPLRDCAKKAGDDGALARSLLDAGAATDAFDRAGRSPLHWACTRGNTAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNYYGFASHGVLA--VPSMVSARVAAGRDFPSSAAAAVQHDDIWVSILDARNAYGSTALHRAAFNGREGVVEALLKGGAGVGVAGKSGRXXXXXXXXXXXXXXXXXXXXXXXXXSASARDGSTPWSELALAAEERPLGCPHVAKAAFLLNAARGSRAWGRRGWLLMLKDKHSRHTIEAERSLEMALEGRGDGLEVCEEVGGRGEEGSLAVLVGQLLGIGEEGCFRLVVGFL 1414
            W  +M S    V+QR LP H GG P   HAGSPIES++    +  +  P S             +VQETGA S+ WLQ PLRDCA+ A DDGALARSLLDAGA T+ FD  GRSPLHWACTRGNTAV   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  +YGFA  G+    VP+ + A      +     AA +   +   SI+DARN YGSTALHRAAFNGREGVV ALL+GGA V V G SGRXXXXXXXXXXXXXXXXXXXXXXXX SA A+DGSTPWS+LALAAE RP GCP VAK A LLN ARG+RAW RRGWLLML+DKH+R   EAE    + L+GRG      E+  G+GE+   A LV QL+GIGEEGCFRLVVGFL
Sbjct:   13 WFNDMIS-KGFVKQRHLPQHTGGPPAAGHAGSPIESILNPDAANENRSPDSDQAXXXXXXXXXXQVQETGAASRTWLQSPLRDCARNADDDGALARSLLDAGAPTNFFDSTGRSPLHWACTRGNTAVVLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFYGFAPIGLPPGNVPASLVAPALEAEELSWPMAAPMPQQNGVESIVDARNVYGSTALHRAAFNGREGVVLALLRGGADVCVVGNSGRXXXXXXXXXXXXXXXXXXXXXXXXESAIAKDGSTPWSQLALAAETRPRGCPRVAKTALLLNTARGARAWARRGWLLMLRDKHNRGVFEAEA---IDLDGRGGACSDMED--GQGED--FARLVNQLVGIGEEGCFRLVVGFL 399
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig72.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LE89_ECTSI1.110e-8964.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig72contigP-littoralis_Contig72:192703..197897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LE89
PFAMsAnk_2,Ank_5
Model size3276
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue6.15e-97
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-00_001340.1
Descriptionspectrin binding
Cds size1149
COG categoryI
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig72.31.1prot_P-littoralis_Contig72.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig72 193359..196038 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791494.2814164-UTR-P-littoralis_Contig72:192702..1928751680791494.2814164-UTR-P-littoralis_Contig72:192702..192875Pylaiella littoralis U1_48UTRP-littoralis_Contig72 192703..192875 +
1680791494.2945788-UTR-P-littoralis_Contig72:193263..1933581680791494.2945788-UTR-P-littoralis_Contig72:193263..193358Pylaiella littoralis U1_48UTRP-littoralis_Contig72 193264..193358 +
1680791494.3956313-UTR-P-littoralis_Contig72:196038..1978971680791494.3956313-UTR-P-littoralis_Contig72:196038..197897Pylaiella littoralis U1_48UTRP-littoralis_Contig72 196039..197897 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791494.3071983-CDS-P-littoralis_Contig72:193358..1933841680791494.3071983-CDS-P-littoralis_Contig72:193358..193384Pylaiella littoralis U1_48CDSP-littoralis_Contig72 193359..193384 +
1680791494.322671-CDS-P-littoralis_Contig72:193936..1940691680791494.322671-CDS-P-littoralis_Contig72:193936..194069Pylaiella littoralis U1_48CDSP-littoralis_Contig72 193937..194069 +
1680791494.3407242-CDS-P-littoralis_Contig72:194330..1944681680791494.3407242-CDS-P-littoralis_Contig72:194330..194468Pylaiella littoralis U1_48CDSP-littoralis_Contig72 194331..194468 +
1680791494.3546252-CDS-P-littoralis_Contig72:194779..1952011680791494.3546252-CDS-P-littoralis_Contig72:194779..195201Pylaiella littoralis U1_48CDSP-littoralis_Contig72 194780..195201 +
1680791494.3666363-CDS-P-littoralis_Contig72:195608..1960381680791494.3666363-CDS-P-littoralis_Contig72:195608..196038Pylaiella littoralis U1_48CDSP-littoralis_Contig72 195609..196038 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig72.31.1

>prot_P-littoralis_Contig72.31.1 ID=prot_P-littoralis_Contig72.31.1|Name=mRNA_P-littoralis_Contig72.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=383bp
MTSGTAVVRQRFLPPHAGGVPTTLHAGSPIESVIAQGESVSSPPPPSTAP
AQQQRVQETGASQNWLQGPLRDCAKKAGDDGALARSLLDAGAATDAFDRA
GRSPLHWACTRGNTAVAVALLDAGADGFARDGAGKTPLHCAAQVGHTPVV
LALLNYYGFASHGVLAVPSMVSARVAAGRDFPSSAAAAVQHDDIWVSILD
ARNAYGSTALHRAAFNGREGVVEALLKGGAGVGVAGKSGRSALHLACHNA
HAGCVGILLAWGADESASARDGSTPWSELALAAEERPLGCPHVAKAAFLL
NAARGSRAWGRRGWLLMLKDKHSRHTIEAERSLEMALEGRGDGLEVCEEV
GGRGEEGSLAVLVGQLLGIGEEGCFRLVVGFL*
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mRNA from alignment at P-littoralis_Contig72:192703..197897+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig72.31.1 ID=mRNA_P-littoralis_Contig72.31.1|Name=mRNA_P-littoralis_Contig72.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5195bp|location=Sequence derived from alignment at P-littoralis_Contig72:192703..197897+ (Pylaiella littoralis U1_48)
GTTGGAAGGACCTTGCATGCTTGCTGTTTTCCTGAGACGAAACCCCATGC
TCCTCAGACGTTCGCCTCGCGTGACCTCTGGCTACGTACCGGTATTCGTT
GAATGACCGGCGTCGATACTGTCCGGAGATTGTGGGGCAATCTGACCAGC
TTTTTTTTCGTGCATTACTCGCGGTGAGTGCGTTGGTGAACGAATTAACC
GGAGATACGAGTGTAGTCGGCTGATGGGCTGATGGGACGATGAGGTGGTT
CCTACTGATGATGTAACCCTTCGATGTCAGCCAGTTGGCCGGCATTCGGT
TCTGGTCCAACCTGCACAGCGACAGTAGGCCGCTTTCGGTCCCCATGGAT
GCATCGGCCCGTGAATTGGGCGTTGCAAACTGTCTTTCGAATACAGTTTG
AGAGCGGCACAATACTTGAACACGTGTGACTGCTGCTGTGTGTGGCAGTT
TGGATCTGTTTTTTGAAGAAAAAAATACCGTCTCTTTGGCATCTGGCACG
TCGCCATCACGTGGATCAACACCGCATGCTCAACTATTAAAGCCATCCAC
TCCTCACACAGATCGAACTTCCTGTTGTGAACCACAAGGAGGAGACGGCA
AGCGGGCTTGGTTGGCCAATCAGGCGAGTTATTGCGGTAGGCTTTGGACG
AGAGAGATGACCTCCGGGACGGCAGTCGTGAGGTGAGCCAACTGTCGTCA
ACCCGGGCGCATTCATCCGCCCGCGGAAGCTTGCGCTACATGTTTCCCAG
CAGCCCTCCTCTGCTTGTTGTGATTGGCCTACTGCTGTGAGTACGTTCAG
TAGGAAGTTCTTTTTTGTGATGCTGCGTCGTGTGGTGTGCAAAAGAAGAG
ATACTGCTATGCAACAAGCATATACGTCTTGCGTGTTTCGAGTGTGACGT
ACTTTGAAGTATCACTCTCTCGCAGCTCCGCTCGCTGTCATTCCACCGCC
TTCTTTTTTCACCTCCCTGTTCGAGGAGAACAGACGACGCATCTTGGTAT
ATCCCACAGCCTACACACAGAGAGACAGACGCACACCCGTCTTGTACCAA
GCGGCGAATTCAATGTTGCAAGTAGGACGTTTCCTTGGTTGTGGCAAACA
GGCTCATGAAAACCAAAATCCAACTTCAGAAATATGACATTATTGCCTGC
CTGAACTCAGGAGAAGAACAGCAATATCACGACGATGTTATTCCCGGCCC
CGTGCCCGTGTGCCCATGTCACTGCATTCGACAGGCAACGCTTTCTGCCC
CCTCACGCAGGGGGGGTGCCGACCACCCTGCACGCGGGGAGCCCCATTGA
GTCCGTCATTGCGCAGGGAGAGTCCGTCAGTAGTCCACCACCGCCGTCGA
CTGCTCCAGCACAGCAGGTGATTGGCTAGCAAAAACAATACTGAAAATCT
ATCTTCGTTTGGCTTTTCTCCCCTTCGTTCAGCCATCGTGCGTGCTTGCA
CGTGCGAGAGAAAATCGGAACACGGTGTGTATGTGTCTGACTGCGTACTC
ACATCCGTTTTTTCGGATAGTCACTTTTGAATGTTATTTATCATGATTGT
ATCCTGTGGCACGTCGCTTTCCCGCACGAAGACACCCATCGCTGACCCCC
CTCCCCTCTGTGCCCTCCCGCCACGCAGCAACGGGTTCAGGAAACAGGTG
CTTCGCAGAATTGGTTACAAGGCCCTCTGCGAGATTGCGCGAAAAAGGCA
GGAGACGACGGTGCGCTCGCCCGATCCTTGTTGGATGCGGGTGCTGCTAC
GGATGCCTTCGACAGGGTGAGCATTGTAATACCGAGATGAGTATATGCAT
ACCCTTCGGAGAAGGTATCGACGAAGAGGTTTTAATTAAATCACACCAGG
TGCTTCATATGTTCATGCGCCACGCAGCATCCTCCCCGCAAAGATCCCCC
CGTTAAGGCGCGCCCTTACATTTCATGCCGCCTTATCATACCATCCCACG
CTCAAGGCTTGTGTGTTGTCGGCACCCGTTTTTACCACGCGCTTGGACAA
GGTAGGCTCCCGGCAGCCACTGTCCCCATGAACGACTCTGCTGTTTCACG
TTGTTCACCACGCGTTTTTTGTTCTAGGCGGGACGTTCCCCTCTTCACTG
GGCCTGCACCCGAGGAAACACGGCCGTCGCCGTGGCGCTGCTCGATGCTG
GAGCCGATGGCTTTGCTCGTGACGGTGCTGGTAAAACGCCACTGCATTGC
GCGGCTCAAGTTGGCCACACCCCGGTCGTGCTGGCGTTGCTCAACTACTA
CGGATTCGCATCCCATGGGGTGCTAGCAGTGCCTTCGATGGTGTCGGCAC
GGGTAGCAGCCGGGAGGGATTTTCCATCATCGGCGGCTGCGGCGGTGCAG
CATGACGATATCTGGGTGTCGATTCTCGATGCTCGGAACGCGTACGGAAG
CACAGCTCTGCACCGGGCGGCGTTCAACGGGCGGGAGGGTGTGGTTGAGG
CGCTACTGAAGGGTGGGGCCGGCGTGGGCGTTGCCGGAAAAAGCGGAAGG
TGAAACTTCGCTTGGTTGTAGACCATTTCTTATGTTTGCTCCACTTCGTC
GCCGAATGGATGTACAGTAGACGGCGATCGAGAAACAATCCCTATGAAAC
AGCAGCAGTATCATACGCGTGCCACGGCTCTCACCTCATTGTTACAGTGA
ATCGAATATTCCGCTTGCCTGTTGTTCTCCGTTTGTACCCTATGTATCTC
TTACTGTTAATATCCATGAACGAGCGTAGTATCATACCACATTCCAGTCC
GCGCCAACATCGCGCGTTCCATGGCATGCCTCCACTGTTTCTTTTCATGG
CCAGCATCGACCACTTCGTGTTATCGAGCACACTCCGCACCCCTCCCTCT
TAACTGCTTGATCCATTCGTTGTTTTCTCTCCCTTCCCCCCACACCCCGA
CAACAGGAGTGCCCTTCATCTCGCGTGCCACAACGCGCACGCCGGGTGCG
TCGGTATCCTTCTCGCCTGGGGCGCCGACGAATCAGCCTCCGCTCGGGAC
GGGTCCACCCCTTGGTCTGAACTCGCGCTAGCCGCCGAAGAGCGACCGCT
CGGCTGTCCCCACGTCGCAAAGGCAGCCTTCCTCCTCAACGCCGCGCGCG
GATCTCGCGCTTGGGGCAGACGAGGTTGGCTGCTGATGCTCAAGGATAAG
CACAGCCGACACACGATTGAGGCCGAGCGAAGTTTGGAGATGGCGTTGGA
AGGTAGAGGAGATGGGTTGGAGGTATGCGAGGAGGTTGGCGGCAGAGGGG
AGGAAGGGAGCCTAGCGGTGCTGGTGGGCCAGCTGCTTGGTATTGGCGAG
GAAGGATGCTTCCGACTGGTGGTAGGATTCCTTTAACAAGTGAGCGTTGC
TGTCGTTGCGTCAAATGGTTCAGGTGTGAGCACTCGACCATTTTCTGCCG
CCGTCTAGCGCCCTGTTGTTGCAGAAAACGGTAAGGGTATTTGTTTTTGC
CGGAGAAAAGCGGACAAGGCATCGACTGGTCTGGTCGTCTGATCGTGACA
CTTGACTTTCTTGCATCAATGCAATGAAGCTCATCTGTCTGGCAGTTATT
ATATTACCGTTTGTTTCATGAGACCAGTTGTAGACCAGAGCTCTACGTGT
AGATTCGCGCTTTTTGTCACCAAGTGCACCTTTGATGAGCAGGCACCATG
TTTCAGGGTGTCCGGTACGTTTTCAGATGATGACAACGTTTTGGTCACAA
AGCAGCAAACTTGAACGGTTTCCATACCTTTTGGGTCTTTGTTCACCCGC
TAGAAATTGTATTTTTACGAAAGAATTTGCCGTGTTGACCGCCGCTTCGA
CGAGGATGATAATGCCGCTCTCATGTCCTACCAGATTTATATCAAGTTCC
AAAAACATTCGAAAATGTGTTATTTTCTGTTCGCTGGGCGACAACTCCCT
CCTTCGGGGCCGAATTCGTTTTTTTTTGTTTATTTACACTCGGAGTACTT
GGGAGTATGATTTTTCTTGATAGGGCGTGTGGGAAGACTGCACGAAAATT
TCACAGAGTGGATGAGTTTCTGATTCTCCCACTTTGCTGCTGCGCTCCGA
AAGGGCCGTACAATTCAATACCATCTCTGCCTGATGGGCGCTTCGTGACT
TTTTGAAGAGGGGGGTGGGCGTGAAGTGTCTGAGTAAGAGAGTATCGGCA
GGGTTTATGACTAAAATTCCAACGTTTTGATACGGTACTGTAGAGATGAT
GCGGAGTTCGCAACCCTGCGCCGGAATGAAACAATCATGATCTTTGTTGG
CTGATGGGGAACTCTACTGGAGGCCTCTGAAATGTGTCATGTGTACGCCC
TCTCTTGTTTTACTCGCCAGGGGAAGAAAGGCCGCGGAAGTATCGCTCAT
CTCTTTGCATGTGCACGGCGTATCGTCACTTGACGCCCTCGCGTCAGGGA
ACCCGACCCAGGCTTCATCTAGAATGCAGACGTATGAAAATCTCGTTGTA
CTGCTTAACCTGGTCTTGTTCATTTTCTTCGGCGGAGAGTACTCGTATTT
CAAGTGGGGGAACAGGGTTTGTCCCAGGTATTCATACTTTTTGGTGTGTC
GAGCACGCGGCGATCTTGTCTGAGTGTACATAATAATGGTGATATTTTGG
AGCTCGCACGTGTTTGTACTCAGGGATGTTTTTTCGCTCGGAGATTGAGT
CAGAATTTTGCTTTTCACGTACTGTAAAGATGGGACAAGAAACCAGAAGC
GTTTCGTAAGCGGGCACAGGCAATCGGAAAAGGCGTCGTGCATGGAAGAT
GGACGTTCGAAGGAGATGCTCGAAGTTCGATACAACAGACTGGTCTGTTT
CAAACGTTGGGGCCTACCGTGCGTCCTGTGCTGTGCGTTCGTCAAATAAA
CCATGCCCGCGTTGGCGACACTCGATCGAAATGATGCTCTTCAAGCGACA
TTTTTACCAGAGCCAGAGCACAATCCAACCCACCAACATGAAGATAAAAC
TCGAGTGTGTGCTTCGAAGACCACACAAGGAGGACGCGTCGTAGGTTCGG
GGCTGGACTAGTCAGGAAATGTAAAACTTCCCGAAAGCGGTCTTAGTGTG
TGTGTGCGTGTGTGTGCGTTCGTACGTCTGTGGGTGGGTGGGAGTTTGTC
GTGGTACATGTGTGACGTGGGGCTGCAGCTGTTTGGAGGGTGTGGCTGGG
GCAGGTCCACGAGAAGAGGATGAGGTGTGTGGAACACTGCTGCTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig72:192703..197897+

>mRNA_P-littoralis_Contig72.31.1 ID=mRNA_P-littoralis_Contig72.31.1|Name=mRNA_P-littoralis_Contig72.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1149bp|location=Sequence derived from alignment at P-littoralis_Contig72:192703..197897+ (Pylaiella littoralis U1_48)
ATGACCTCCGGGACGGCAGTCGTGAGGCAACGCTTTCTGCCCCCTCACGC
AGGGGGGGTGCCGACCACCCTGCACGCGGGGAGCCCCATTGAGTCCGTCA
TTGCGCAGGGAGAGTCCGTCAGTAGTCCACCACCGCCGTCGACTGCTCCA
GCACAGCAGCAACGGGTTCAGGAAACAGGTGCTTCGCAGAATTGGTTACA
AGGCCCTCTGCGAGATTGCGCGAAAAAGGCAGGAGACGACGGTGCGCTCG
CCCGATCCTTGTTGGATGCGGGTGCTGCTACGGATGCCTTCGACAGGGCG
GGACGTTCCCCTCTTCACTGGGCCTGCACCCGAGGAAACACGGCCGTCGC
CGTGGCGCTGCTCGATGCTGGAGCCGATGGCTTTGCTCGTGACGGTGCTG
GTAAAACGCCACTGCATTGCGCGGCTCAAGTTGGCCACACCCCGGTCGTG
CTGGCGTTGCTCAACTACTACGGATTCGCATCCCATGGGGTGCTAGCAGT
GCCTTCGATGGTGTCGGCACGGGTAGCAGCCGGGAGGGATTTTCCATCAT
CGGCGGCTGCGGCGGTGCAGCATGACGATATCTGGGTGTCGATTCTCGAT
GCTCGGAACGCGTACGGAAGCACAGCTCTGCACCGGGCGGCGTTCAACGG
GCGGGAGGGTGTGGTTGAGGCGCTACTGAAGGGTGGGGCCGGCGTGGGCG
TTGCCGGAAAAAGCGGAAGGAGTGCCCTTCATCTCGCGTGCCACAACGCG
CACGCCGGGTGCGTCGGTATCCTTCTCGCCTGGGGCGCCGACGAATCAGC
CTCCGCTCGGGACGGGTCCACCCCTTGGTCTGAACTCGCGCTAGCCGCCG
AAGAGCGACCGCTCGGCTGTCCCCACGTCGCAAAGGCAGCCTTCCTCCTC
AACGCCGCGCGCGGATCTCGCGCTTGGGGCAGACGAGGTTGGCTGCTGAT
GCTCAAGGATAAGCACAGCCGACACACGATTGAGGCCGAGCGAAGTTTGG
AGATGGCGTTGGAAGGTAGAGGAGATGGGTTGGAGGTATGCGAGGAGGTT
GGCGGCAGAGGGGAGGAAGGGAGCCTAGCGGTGCTGGTGGGCCAGCTGCT
TGGTATTGGCGAGGAAGGATGCTTCCGACTGGTGGTAGGATTCCTTTAA
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