mRNA_P-littoralis_Contig72.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig72.20.1
Unique Name	mRNA_P-littoralis_Contig72.20.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig72.20.1 vs. uniprot
Match: D7FV89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV89_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 6.100e-63
Identity = 101/111 (90.99%), Postives = 104/111 (93.69%), Query Frame = 2

Query:    8 PFFGHMDEVEEFDGQDIEDWTLYIIKLDALEEPDVFLNADVTPVFGRNYKRYLDLIDTAPRHRVTHFVRPSRTVSRCHIPKLVGDLLAHELGDPLLEDTDCARRFKKGIFV 340
            P FGHMDEVEEFDG DIEDWTLYII+LDAL+EPDVFLNADVTPVFGRNYKRYLDLIDTAPRHRVTHFVRPSRTV RCHIP LV DLL HELGDPLLED DCAR+FKKGIFV
Sbjct:  403 PVFGHMDEVEEFDGHDIEDWTLYIIELDALDEPDVFLNADVTPVFGRNYKRYLDLIDTAPRHRVTHFVRPSRTVGRCHIPTLVRDLLEHELGDPLLEDADCARKFKKGIFV 513

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BLAST of mRNA_P-littoralis_Contig72.20.1 vs. uniprot
Match: D7FWV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV6_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 1.030e-62
Identity = 99/111 (89.19%), Postives = 102/111 (91.89%), Query Frame = 2

Query:    8 PFFGHMDEVEEFDGQDIEDWTLYIIKLDALEEPDVFLNADVTPVFGRNYKRYLDLIDTAPRHRVTHFVRPSRTVSRCHIPKLVGDLLAHELGDPLLEDTDCARRFKKGIFV 340
            P FGHMDEVEEFDG DIEDWTLYII+LDAL+EPDVFLNADVTPVFGRNYKRYLDLIDTAPRHRVTHFVRPSRTV RCHIP LV DLL HEL D LLED DCAR+FKKGIFV
Sbjct:  403 PVFGHMDEVEEFDGHDIEDWTLYIIELDALDEPDVFLNADVTPVFGRNYKRYLDLIDTAPRHRVTHFVRPSRTVGRCHIPTLVRDLLEHELADSLLEDADCARKFKKGIFV 513

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BLAST of mRNA_P-littoralis_Contig72.20.1 vs. uniprot
Match: A0A6H5JCS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS9_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 1.670e-62
Identity = 102/111 (91.89%), Postives = 104/111 (93.69%), Query Frame = 2

Query:    8 PFFGHMDEVEEFDGQDIEDWTLYIIKLDALEEPDVFLNADVTPVFGRNYKRYLDLIDTAPRHRVTHFVRPSRTVSRCHIPKLVGDLLAHELGDPLLEDTDCARRFKKGIFV 340
            P FGHMDEVEEFDG +IEDWTLYIIKLDAL EPDVFLNADVTPVFGRNYKRYLDLID APRHRVTHFVRPSRTVS+CHI KLV DLLAHELGDPLLED DCARRFKKGIFV
Sbjct:  589 PVFGHMDEVEEFDGHNIEDWTLYIIKLDALGEPDVFLNADVTPVFGRNYKRYLDLIDNAPRHRVTHFVRPSRTVSKCHISKLVRDLLAHELGDPLLEDADCARRFKKGIFV 699

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BLAST of mRNA_P-littoralis_Contig72.20.1 vs. uniprot
Match: A0A6H5LNU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNU8_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 1.660e-61
Identity = 100/111 (90.09%), Postives = 103/111 (92.79%), Query Frame = 2

Query:    8 PFFGHMDEVEEFDGQDIEDWTLYIIKLDALEEPDVFLNADVTPVFGRNYKRYLDLIDTAPRHRVTHFVRPSRTVSRCHIPKLVGDLLAHELGDPLLEDTDCARRFKKGIFV 340
            P FGHMDEVEEFDG +IEDWTLYI+KLDAL EPDVF NADVTPVFGRNYKRYLDLID APR+RVTHFVRPSRTVSRCHIPKLV DLLAHELGDPLLED DCARRFK GIFV
Sbjct:  581 PVFGHMDEVEEFDGHNIEDWTLYIVKLDALGEPDVFHNADVTPVFGRNYKRYLDLIDNAPRYRVTHFVRPSRTVSRCHIPKLVKDLLAHELGDPLLEDADCARRFKNGIFV 691

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BLAST of mRNA_P-littoralis_Contig72.20.1 vs. uniprot
Match: A0A6H5KWL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWL4_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 7.690e-60
Identity = 98/106 (92.45%), Postives = 100/106 (94.34%), Query Frame = 2

Query:   23 MDEVEEFDGQDIEDWTLYIIKLDALEEPDVFLNADVTPVFGRNYKRYLDLIDTAPRHRVTHFVRPSRTVSRCHIPKLVGDLLAHELGDPLLEDTDCARRFKKGIFV 340
            MDEVEEFDG +IEDWTLYIIKLDAL EPDVF NADVTPVFGRNY+RYLDLID APRHRVTHFVRPSRTVSRCHIPKLV DLLAHELGDPLLED DCARRFKKGIFV
Sbjct:    1 MDEVEEFDGHNIEDWTLYIIKLDALGEPDVFRNADVTPVFGRNYQRYLDLIDNAPRHRVTHFVRPSRTVSRCHIPKLVRDLLAHELGDPLLEDADCARRFKKGIFV 106

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BLAST of mRNA_P-littoralis_Contig72.20.1 vs. uniprot
Match: A0A6H5JHT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT1_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 9.380e-59
Identity = 95/113 (84.07%), Postives = 102/113 (90.27%), Query Frame = 2

Query:    2 VFPFFGHMDEVEEFDGQDIEDWTLYIIKLDALEEPDVFLNADVTPVFGRNYKRYLDLIDTAPRHRVTHFVRPSRTVSRCHIPKLVGDLLAHELGDPLLEDTDCARRFKKGIFV 340
            + P FGHMDEVEEFD  +IEDWTL++IKLD L+EPDVFLNADVTPV GRNYKRYLDLIDTAPRHRVTHFVR SRTV RCHIP LV DLLAHELGDPL+ED DCARRFKKGIF+
Sbjct:  426 MVPVFGHMDEVEEFDSHNIEDWTLFVIKLDKLDEPDVFLNADVTPVSGRNYKRYLDLIDTAPRHRVTHFVRLSRTVDRCHIPTLVRDLLAHELGDPLIEDVDCARRFKKGIFM 538

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BLAST of mRNA_P-littoralis_Contig72.20.1 vs. uniprot
Match: A0A6H5K264_9PHAE (Complex1_49kDa domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K264_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 2.600e-56
Identity = 93/103 (90.29%), Postives = 95/103 (92.23%), Query Frame = 2

Query:   32 VEEFDGQDIEDWTLYIIKLDALEEPDVFLNADVTPVFGRNYKRYLDLIDTAPRHRVTHFVRPSRTVSRCHIPKLVGDLLAHELGDPLLEDTDCARRFKKGIFV 340
            VEEFDG +IEDWTLYIIKLDAL EPDVFLNADVTP+FGRNYKRYLDLID APRHRVTHFVRPSRTVSRCHIPKLV DL AHELGDPLLED DCARRFKKG  V
Sbjct:  188 VEEFDGHNIEDWTLYIIKLDALGEPDVFLNADVTPIFGRNYKRYLDLIDNAPRHRVTHFVRPSRTVSRCHIPKLVKDLFAHELGDPLLEDADCARRFKKGTLV 290

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BLAST of mRNA_P-littoralis_Contig72.20.1 vs. uniprot
Match: A0A6H5KSM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM3_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 9.000e-56
Identity = 91/113 (80.53%), Postives = 98/113 (86.73%), Query Frame = 2

Query:    2 VFPFFGHMDEVEEFDGQDIEDWTLYIIKLDALEEPDVFLNADVTPVFGRNYKRYLDLIDTAPRHRVTHFVRPSRTVSRCHIPKLVGDLLAHELGDPLLEDTDCARRFKKGIFV 340
            V P FGH+DEVEE+D   IEDWTLYII+LDA  +PDVF NADVTPVFGRNYKRYLDL+DTA RHRVTHFVRPSR VS CHIPKLV DLLAHE GDP L+D DCAR+FKKGIFV
Sbjct:  593 VVPVFGHVDEVEEYDDHGIEDWTLYIIELDAFGKPDVFFNADVTPVFGRNYKRYLDLVDTAARHRVTHFVRPSRIVSMCHIPKLVRDLLAHEPGDPFLQDADCARKFKKGIFV 705

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BLAST of mRNA_P-littoralis_Contig72.20.1 vs. uniprot
Match: A0A6H5L909_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L909_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 1.450e-55
Identity = 91/113 (80.53%), Postives = 99/113 (87.61%), Query Frame = 2

Query:    2 VFPFFGHMDEVEEFDGQDIEDWTLYIIKLDALEEPDVFLNADVTPVFGRNYKRYLDLIDTAPRHRVTHFVRPSRTVSRCHIPKLVGDLLAHELGDPLLEDTDCARRFKKGIFV 340
            V P FGH+DEVEE+D  DIEDWTLY I+LDAL +PDVFLNADVTPVFGRNY+RYLDL+DTA R RVTHFVRPSR VS CHIP L  DLLAHELGDPLL+D DCAR+FKKGIFV
Sbjct:  143 VVPVFGHVDEVEEYDDHDIEDWTLYKIELDALGKPDVFLNADVTPVFGRNYERYLDLVDTAARRRVTHFVRPSRIVSMCHIPTLAKDLLAHELGDPLLQDADCARKFKKGIFV 255

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BLAST of mRNA_P-littoralis_Contig72.20.1 vs. uniprot
Match: A0A6H5JTS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTS3_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 1.540e-52
Identity = 88/113 (77.88%), Postives = 95/113 (84.07%), Query Frame = 2

Query:    2 VFPFFGHMDEVEEFDGQDIEDWTLYIIKLDALEEPDVFLNADVTPVFGRNYKRYLDLIDTAPRHRVTHFVRPSRTVSRCHIPKLVGDLLAHELGDPLLEDTDCARRFKKGIFV 340
            V P FGH+DEVEE+   DIEDWTLY I+LDAL +PD  LNADVTPVFGRNYKRYLDL+DTA RHRVTHFVRPSR VS CHIP L  DLLAHELGD LL+D DCAR+FKKG FV
Sbjct:  503 VVPVFGHVDEVEEYHDHDIEDWTLYKIELDALGKPDELLNADVTPVFGRNYKRYLDLVDTAARHRVTHFVRPSRIVSMCHIPTLAKDLLAHELGDRLLQDADCARKFKKGTFV 615

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig72.20.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig72.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FV89_ECTSI	6.100e-63	90.99	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
D7FWV6_ECTSI	1.030e-62	89.19	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JCS9_9PHAE	1.670e-62	91.89	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5LNU8_9PHAE	1.660e-61	90.09	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KWL4_9PHAE	7.690e-60	92.45	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JHT1_9PHAE	9.380e-59	84.07	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K264_9PHAE	2.600e-56	90.29	Complex1_49kDa domain-containing protein n=1 Tax=E...	[more]
A0A6H5KSM3_9PHAE	9.000e-56	80.53	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L909_9PHAE	1.450e-55	80.53	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JTS3_9PHAE	1.540e-52	77.88	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig72	contig	P-littoralis_Contig72:172760..173099 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	2880.D7FV89
Model size	341
Max annot lvl	2759\|Eukaryota
Hectar predicted targeting category	other localisation
Exons	1
Evalue	1.17e-59
EggNOG OGs	2E3IK@1\|root,2SAKM@2759\|Eukaryota
Cds size	318

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791494.0278935-CDS-P-littoralis_Contig72:172759..173077	1680791494.0278935-CDS-P-littoralis_Contig72:172759..173077	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig72 172760..173077 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791494.039388-UTR-P-littoralis_Contig72:173077..173099	1680791494.039388-UTR-P-littoralis_Contig72:173077..173099	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig72 173078..173099 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig72.20.1	prot_P-littoralis_Contig72.20.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig72 172760..173077 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig72:172760..173099-
coding sequence from alignment at P-littoralis_Contig72:172760..173099-

protein sequence of mRNA_P-littoralis_Contig72.20.1

>prot_P-littoralis_Contig72.20.1 ID=prot_P-littoralis_Contig72.20.1|Name=mRNA_P-littoralis_Contig72.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=106bp
MDEVEEFDGQDIEDWTLYIIKLDALEEPDVFLNADVTPVFGRNYKRYLDL
IDTAPRHRVTHFVRPSRTVSRCHIPKLVGDLLAHELGDPLLEDTDCARRF
KKGIFV

mRNA from alignment at P-littoralis_Contig72:172760..173099-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig72.20.1 ID=mRNA_P-littoralis_Contig72.20.1|Name=mRNA_P-littoralis_Contig72.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=340bp|location=Sequence derived from alignment at P-littoralis_Contig72:172760..173099- (Pylaiella littoralis U1_48)
GGTCTTCCCCTTTTTCGGCCACATGGATGAGGTGGAGGAGTTCGATGGCC
AAGACATCGAGGATTGGACGCTATACATCATCAAGCTGGACGCCCTCGAA
GAGCCAGACGTATTCCTCAACGCGGATGTGACACCAGTCTTTGGCCGAAA
CTACAAGCGTTACCTCGACCTCATCGACACCGCGCCTCGTCATAGAGTCA
CCCACTTCGTGCGACCATCCAGAACGGTCAGCAGGTGCCACATACCCAAA
CTTGTGGGAGACCTGCTCGCGCATGAGTTGGGTGATCCCCTCCTCGAGGA
TACCGACTGTGCACGCCGGTTCAAAAAAGGAATATTCGTG

Coding sequence (CDS) from alignment at P-littoralis_Contig72:172760..173099-

>mRNA_P-littoralis_Contig72.20.1 ID=mRNA_P-littoralis_Contig72.20.1|Name=mRNA_P-littoralis_Contig72.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig72:172760..173099- (Pylaiella littoralis U1_48)
ATGGATGAGGTGGAGGAGTTCGATGGCCAAGACATCGAGGATTGGACGCT
ATACATCATCAAGCTGGACGCCCTCGAAGAGCCAGACGTATTCCTCAACG
CGGATGTGACACCAGTCTTTGGCCGAAACTACAAGCGTTACCTCGACCTC
ATCGACACCGCGCCTCGTCATAGAGTCACCCACTTCGTGCGACCATCCAG
AACGGTCAGCAGGTGCCACATACCCAAACTTGTGGGAGACCTGCTCGCGC
ATGAGTTGGGTGATCCCCTCCTCGAGGATACCGACTGTGCACGCCGGTTC
AAAAAAGGAATATTCGTG