mRNA_P-littoralis_Contig72.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig72.19.1
Unique NamemRNA_P-littoralis_Contig72.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig72.19.1 vs. uniprot
Match: A0A6H5JCN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCN5_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.410e-19
Identity = 48/73 (65.75%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    1 PVTEEDRDTARRLVVALATRTPYLPGGVANTYADTFVFPTDAPRTTGSRRASEANNAMVPDGRGGMEKKAKQK 219
            PVTE DRD AR+ VV    R P  P  VANTYA+T  FP DAPR++GSRR +EANNAMVP+GRGG+EK+A QK
Sbjct:  297 PVTEADRDHARKSVVTSLARDPDPPRPVANTYANTCEFPADAPRSSGSRRGTEANNAMVPNGRGGLEKRAVQK 369
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BLAST of mRNA_P-littoralis_Contig72.19.1 vs. uniprot
Match: A0A6H5KK46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK46_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.430e-19
Identity = 48/73 (65.75%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    1 PVTEEDRDTARRLVVALATRTPYLPGGVANTYADTFVFPTDAPRTTGSRRASEANNAMVPDGRGGMEKKAKQK 219
            PVTE DRD AR+ VV    R P  P  VANTYA+T  FP DAPR++GSRR +EANNAMVP+GRGG+EK+A QK
Sbjct:  257 PVTEADRDHARKSVVTSLARDPDPPRPVANTYANTCEFPADAPRSSGSRRGTEANNAMVPNGRGGLEKRAVQK 329
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BLAST of mRNA_P-littoralis_Contig72.19.1 vs. uniprot
Match: A0A6H5JRU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRU8_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.090e-11
Identity = 35/59 (59.32%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 PVTEEDRDTARRLVVALATRTPYLPGGVANTYADTFVFPTDAPRTTGSRRASEANNAMV 177
            PV+++DRD+AR+LVVA  T+ P  PG   + YAD  V+P +APRT GSRRA+EANNA+V
Sbjct:   88 PVSDKDRDSARKLVVAHTTK-PAPPGASISPYADRLVWPENAPRTPGSRRATEANNALV 145
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BLAST of mRNA_P-littoralis_Contig72.19.1 vs. uniprot
Match: D7FUP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP9_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 3.290e-10
Identity = 40/70 (57.14%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:   10 EEDRDTARRLVVALATRTPYLPGGVANTYADTFVFPTDAPRTTGSRRASEANNAMVPDGRGGMEKKAKQK 219
            +EDRD+AR+ VVA  TR    PG   + YAD  V+P +APRTTGSR+A+EANNAMV    G M KKA  K
Sbjct:  153 DEDRDSARKSVVAHTTRAAP-PGATIDPYADRLVWPENAPRTTGSRKATEANNAMVKVN-GKMVKKASVK 220
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BLAST of mRNA_P-littoralis_Contig72.19.1 vs. uniprot
Match: D7G8P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P5_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.570e-6
Identity = 36/69 (52.17%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:    7 TEEDRDTARRLVVALA-TRTPYLPGGVANTYADTFVFPTDAPRTTGSRRASEANNAMVPDGRGGMEKKA 210
            T  DRD+AR+ VV  A +R P + G   N +AD+ V    APRTTGSR+A+EANNAM  DG  G   KA
Sbjct:  310 TRVDRDSARQSVVDRAESRMPPI-GAPHNPFADSLVLSDTAPRTTGSRKATEANNAMAWDGSAGNWVKA 377
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig72.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JCN5_9PHAE1.410e-1965.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK46_9PHAE1.430e-1965.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRU8_9PHAE1.090e-1159.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUP9_ECTSI3.290e-1057.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8P5_ECTSI1.570e-652.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig72contigP-littoralis_Contig72:165309..166051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size270
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size174
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791493.9337282-UTR-P-littoralis_Contig72:165308..1654021680791493.9337282-UTR-P-littoralis_Contig72:165308..165402Pylaiella littoralis U1_48UTRP-littoralis_Contig72 165309..165402 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791493.9445117-CDS-P-littoralis_Contig72:165402..1655281680791493.9445117-CDS-P-littoralis_Contig72:165402..165528Pylaiella littoralis U1_48CDSP-littoralis_Contig72 165403..165528 +
1680791493.96114-CDS-P-littoralis_Contig72:166003..1660511680791493.96114-CDS-P-littoralis_Contig72:166003..166051Pylaiella littoralis U1_48CDSP-littoralis_Contig72 166004..166051 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig72.19.1prot_P-littoralis_Contig72.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig72 165403..166051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig72.19.1

>prot_P-littoralis_Contig72.19.1 ID=prot_P-littoralis_Contig72.19.1|Name=mRNA_P-littoralis_Contig72.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=58bp
MPTRLSSRRTLRVRLAHAGRRKRTTLWYRTDGGAWRRRRNKNDGHSGRGE
GHGARGRV
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mRNA from alignment at P-littoralis_Contig72:165309..166051+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig72.19.1 ID=mRNA_P-littoralis_Contig72.19.1|Name=mRNA_P-littoralis_Contig72.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=743bp|location=Sequence derived from alignment at P-littoralis_Contig72:165309..166051+ (Pylaiella littoralis U1_48)
CCTGTAACTGAGGAGGACCGCGATACTGCTCGAAGATTAGTAGTGGCGCT
AGCCACCCGCACGCCATATCTGCCTGGAGGTGTTGCCAACACCTATGCCG
ACACGTTTGTCTTCCCGACGGACGCTCCGCGTACGACTGGCTCACGCAGG
GCGTCGGAAGCGAACAACGCTATGGTACCGGACGGACGGGGGGGCATGGA
GAAGAAGGCGAAACAAAAATGTGAAGGAGTGATGTGTGTTGTTGTTGTTG
TTGTTGTTGTTGTGGTCCCTCGTTATTGGCTGCTTGGAAATATTGTTTCC
CTCTTCTTTGCGTTTTTTTTTCGTGTTCCGGACAGCCAACTCGTGCTTCC
ACGCCGGCTGTGCGTGCACCAGTGCCGAGGTCGGCAAGTGCGTGTGTCCC
AAGAGCCACAAGCACACGAAGAACGCTTCTGTGGGCGATGAGTGACTCGG
TCTTTTTATTTCTGGGTGGTGGACAACTACACGATACCTTTGGTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TTGTTGATGTTGTTGTTATTGTTGTTGTTGTTGTCGTCGTGACCTCTCCT
TTCCTCGTGTACTCCGTACCGTGCAGCTGCTGCGTGAGTTGACAGCGACT
AGCACGCATTTTCCCCATATTCTTGTTTCTCGTTTTTGCAGCAAGGACGG
CCACAGTGGACGGGGTGAAGGTCACGGTGCCCGAGGCCGTGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig72:165309..166051+

>mRNA_P-littoralis_Contig72.19.1 ID=mRNA_P-littoralis_Contig72.19.1|Name=mRNA_P-littoralis_Contig72.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=174bp|location=Sequence derived from alignment at P-littoralis_Contig72:165309..166051+ (Pylaiella littoralis U1_48)
ATGCCGACACGTTTGTCTTCCCGACGGACGCTCCGCGTACGACTGGCTCA
CGCAGGGCGTCGGAAGCGAACAACGCTATGGTACCGGACGGACGGGGGGG
CATGGAGAAGAAGGCGAAACAAAAATGACGGCCACAGTGGACGGGGTGAA
GGTCACGGTGCCCGAGGCCGTGTG
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