mRNA_P-littoralis_Contig719.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig719.12.1
Unique NamemRNA_P-littoralis_Contig719.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig719.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig719contigP-littoralis_Contig719:82405..83144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size740
Hectar predicted targeting categoryother localisation
Exons1
Cds size471
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791493.7766526-UTR-P-littoralis_Contig719:82404..825661680791493.7766526-UTR-P-littoralis_Contig719:82404..82566Pylaiella littoralis U1_48UTRP-littoralis_Contig719 82405..82566 +
1680791493.806512-UTR-P-littoralis_Contig719:83037..831441680791493.806512-UTR-P-littoralis_Contig719:83037..83144Pylaiella littoralis U1_48UTRP-littoralis_Contig719 83038..83144 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791493.795551-CDS-P-littoralis_Contig719:82566..830371680791493.795551-CDS-P-littoralis_Contig719:82566..83037Pylaiella littoralis U1_48CDSP-littoralis_Contig719 82567..83037 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig719.12.1prot_P-littoralis_Contig719.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig719 82567..83037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig719.12.1

>prot_P-littoralis_Contig719.12.1 ID=prot_P-littoralis_Contig719.12.1|Name=mRNA_P-littoralis_Contig719.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=157bp
MFNVRELGADDEQFVVIGDKGMMKVTAIGSLFLKFMFLREGDDTVHTVET
QIDNVLVVPGIGFNLFSGWRASVEGAAVALHRDGTHISNGKLIFMRGRSN
DYAYAIRLPPPVQRANISLTSVPPSAPLPFPRMRVLCRVMFRVHSPLPPS
CGRTKY*
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mRNA from alignment at P-littoralis_Contig719:82405..83144+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig719.12.1 ID=mRNA_P-littoralis_Contig719.12.1|Name=mRNA_P-littoralis_Contig719.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=740bp|location=Sequence derived from alignment at P-littoralis_Contig719:82405..83144+ (Pylaiella littoralis U1_48)
AGTGTGCATAGAGGCAAGTGTGATTCTGGTTCTGAGCGTGCAAATGTTCT
GGGAAGTTATGCGTTGGTGTGCTCGAGTAGGCGTATCCCTCAACCCCCTG
GCAGTGAGAAATGGGAGTCTGACACGGGTGCCAGTGCTTTCATCACATTT
AACAGAGAGAAGATGTTCAACGTGCGTGAACTAGGAGCAGATGATGAGCA
GTTTGTCGTGATCGGAGACAAGGGGATGATGAAAGTCACGGCTATCGGAA
GTTTGTTCCTGAAATTCATGTTTCTTCGCGAGGGTGATGACACAGTTCAC
ACGGTTGAGACACAGATAGACAACGTGCTTGTGGTACCAGGGATCGGATT
CAATTTGTTTTCAGGATGGAGGGCTTCTGTAGAGGGGGCAGCTGTTGCGC
TTCACAGGGATGGTACTCACATCTCAAATGGCAAACTCATCTTCATGCGT
GGGCGATCAAATGACTACGCATATGCCATTCGACTTCCCCCTCCCGTTCA
GCGTGCTAACATCTCCCTCACAAGTGTCCCCCCGAGTGCCCCTCTTCCCT
TCCCCCGAATGAGAGTGCTGTGTCGAGTGATGTTCCGAGTGCATTCTCCC
CTTCCCCCTAGCTGCGGCAGGACCAAATATTGACAAGTCTTTGTGTGTGG
AGGCTTTCCCTGGTATGACTCTGGGACCCGAGGTGGAGAGTGTGCTGTCA
GATACGAGAGTGAACAGAGGATGTGATTCGAGTGACGCGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig719:82405..83144+

>mRNA_P-littoralis_Contig719.12.1 ID=mRNA_P-littoralis_Contig719.12.1|Name=mRNA_P-littoralis_Contig719.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=471bp|location=Sequence derived from alignment at P-littoralis_Contig719:82405..83144+ (Pylaiella littoralis U1_48)
ATGTTCAACGTGCGTGAACTAGGAGCAGATGATGAGCAGTTTGTCGTGAT
CGGAGACAAGGGGATGATGAAAGTCACGGCTATCGGAAGTTTGTTCCTGA
AATTCATGTTTCTTCGCGAGGGTGATGACACAGTTCACACGGTTGAGACA
CAGATAGACAACGTGCTTGTGGTACCAGGGATCGGATTCAATTTGTTTTC
AGGATGGAGGGCTTCTGTAGAGGGGGCAGCTGTTGCGCTTCACAGGGATG
GTACTCACATCTCAAATGGCAAACTCATCTTCATGCGTGGGCGATCAAAT
GACTACGCATATGCCATTCGACTTCCCCCTCCCGTTCAGCGTGCTAACAT
CTCCCTCACAAGTGTCCCCCCGAGTGCCCCTCTTCCCTTCCCCCGAATGA
GAGTGCTGTGTCGAGTGATGTTCCGAGTGCATTCTCCCCTTCCCCCTAGC
TGCGGCAGGACCAAATATTGA
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