mRNA_P-littoralis_Contig719.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig719.1.1
Unique NamemRNA_P-littoralis_Contig719.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig719.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig719contigP-littoralis_Contig719:276..1976 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size396
Hectar predicted targeting categoryother localisation
Exons2
Cds size369
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791493.6293561-UTR-P-littoralis_Contig719:275..2981680791493.6293561-UTR-P-littoralis_Contig719:275..298Pylaiella littoralis U1_48UTRP-littoralis_Contig719 276..298 +
1680791493.6403308-UTR-P-littoralis_Contig719:1605..16071680791493.6403308-UTR-P-littoralis_Contig719:1605..1607Pylaiella littoralis U1_48UTRP-littoralis_Contig719 1606..1607 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791493.6504192-CDS-P-littoralis_Contig719:1607..19761680791493.6504192-CDS-P-littoralis_Contig719:1607..1976Pylaiella littoralis U1_48CDSP-littoralis_Contig719 1608..1976 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig719.1.1prot_P-littoralis_Contig719.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig719 1608..1976 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig719.1.1

>prot_P-littoralis_Contig719.1.1 ID=prot_P-littoralis_Contig719.1.1|Name=mRNA_P-littoralis_Contig719.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=123bp
MSGRRFAARNNSQRVQPVHGHYGPAPARENRGRRANRGDSRDRPRRQGDA
DGPPRGGYAAMAASPPRGDRSVRRKRAAEDDWETPPPRIGAHLAPWEIEA
LRWTAKRAERRTSYERRERLAFE
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mRNA from alignment at P-littoralis_Contig719:276..1976+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig719.1.1 ID=mRNA_P-littoralis_Contig719.1.1|Name=mRNA_P-littoralis_Contig719.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1701bp|location=Sequence derived from alignment at P-littoralis_Contig719:276..1976+ (Pylaiella littoralis U1_48)
GGGGAACACACGCTCTCGCAAAGGTCTGATACGTATTCCCATTTATGCGT
GATGTTGGTCACACAATCGCTGCCAGCAATGCTGCCAGCTGAACACTCGG
CCTTGTGGAGGATGCTGTGTGTGGGTTCCCCACCTGTTATATGGTGTCCA
ACGAGAATGAATCGTAGTGCTATCAGGAGTCTGGAGTGCTGACCGCGCTT
GCTTGCGGCCATTTTGCACGCGTGCAGCCTGCGCAAACGGCTTCTTGCAG
CATGCGCAAACGGCTTCTTGCGATGCGGAAGCCTGGGCGGGACGCTGTAC
GCATTTGCCGGTTCTTGGTGTGGTGGCGGGACGTTGTCCCCGCGGCTGCA
TCTGACCTGCTGGCTGGCCTGTTGCGCTGTGGCTGCCTGAGCGGGACGCT
GTCCCCTCTTAGGCATCTGCCGTTTGCTGGTGTTGCAGCGGGACGTTGTC
CCCGCGGATGCACCATTGCGCGCATGACCAGCTCTCTCGTGCCTGCGAGC
ACGCGTTTTTTTTTTCGGAAAGCTGTGACTCGCTCGCGCGGGTCCCCGCG
AGGCTCTCCTGTGGGATACTTGGCTGGCTGCTGTCGCCACGTGCGCGACT
GCGTATGCACTTTCCTGTGGACGATTGCACAGCACAGGCCTCAGCTGGTG
TTCTGCTGTGCTGCGAAGCAGCCGCGTGCTGCGGTGCTGCGGAGGAGCTG
CGTTCTGCTGCGTTGCAGAGCAGCTGTGGCGCTTCACTACCTTGTTTTCT
TTTTTTTGCGTTCTCTTTTTCTATACGATACTCTTTGTTGTTGCACGCTG
TTTGTGTTTGGTGTTTTTTTTTTGTGTGTGCTTGCTCGTTCATTACTGCT
GTATGATATCGCGGTGTATTGAAAGCTGTTTTTTGTGTTTCTTTTTGTGC
TCTCTCTACCTATAATACTGTGTATCGAAAGCTGTTTATGCTGTACGCTT
CATTTCTCACAGGTATCGTCGTGAGTTGCAGCTGTCTGCTACACCTGTTG
CTGTTGTCGTGTGTGCCGCAGCGAGCCGTGCATCCACCTCGCATGTGACA
TTGGTATTGTTTTTTTTTTCTCTCGTTCTCCTTTGTTTGTCAATCATATT
TTTCGGTTCATAATTCACCACGCGTGAAGCACTGTTTTTTTTTCCTTTCT
TTGCTACACAATGGGTCTTTTGTTACACTACCTCTTCATAGTTTTTTTTT
TTTTTGAGGGGGGGGTGTGAGCTAGGTAGCATGTAGTGTCGGCACATTTC
CCATGTCCCCTTTCTAACTCCATTCCCCGTTCTCCTCGGGCCGTTTACTG
GTCCACCCCCGCACTCTGCTGTGAATGCAGCCATGTCTGGTCGTCGTTTC
GCAGCTAGGAACAACTCGCAGCGCGTGCAACCTGTCCATGGTCACTATGG
ACCCGCCCCTGCCCGCGAGAATCGGGGCCGTAGGGCCAACCGTGGTGACA
GCAGGGACCGGCCCAGGAGGCAGGGCGACGCTGATGGCCCCCCTCGGGGA
GGCTATGCAGCTATGGCTGCCTCGCCCCCTCGTGGTGATCGTTCGGTCAG
GCGCAAGCGTGCTGCCGAAGATGACTGGGAGACTCCGCCTCCCAGGATCG
GAGCGCACCTCGCCCCCTGGGAGATCGAGGCTCTGCGATGGACAGCAAAG
CGGGCGGAGAGGCGGACAAGCTACGAGCGCCGCGAGCGCTTGGCCTTCGA
A
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Coding sequence (CDS) from alignment at P-littoralis_Contig719:276..1976+

>mRNA_P-littoralis_Contig719.1.1 ID=mRNA_P-littoralis_Contig719.1.1|Name=mRNA_P-littoralis_Contig719.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=369bp|location=Sequence derived from alignment at P-littoralis_Contig719:276..1976+ (Pylaiella littoralis U1_48)
ATGTCTGGTCGTCGTTTCGCAGCTAGGAACAACTCGCAGCGCGTGCAACC
TGTCCATGGTCACTATGGACCCGCCCCTGCCCGCGAGAATCGGGGCCGTA
GGGCCAACCGTGGTGACAGCAGGGACCGGCCCAGGAGGCAGGGCGACGCT
GATGGCCCCCCTCGGGGAGGCTATGCAGCTATGGCTGCCTCGCCCCCTCG
TGGTGATCGTTCGGTCAGGCGCAAGCGTGCTGCCGAAGATGACTGGGAGA
CTCCGCCTCCCAGGATCGGAGCGCACCTCGCCCCCTGGGAGATCGAGGCT
CTGCGATGGACAGCAAAGCGGGCGGAGAGGCGGACAAGCTACGAGCGCCG
CGAGCGCTTGGCCTTCGAA
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