mRNA_P-littoralis_Contig719.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig719.22.1
Unique NamemRNA_P-littoralis_Contig719.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig719.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig719contigP-littoralis_Contig719:129342..130200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size505
Hectar predicted targeting categoryother localisation
Exons3
Cds size483
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791493.558727-CDS-P-littoralis_Contig719:129341..1294501680791493.558727-CDS-P-littoralis_Contig719:129341..129450Pylaiella littoralis U1_48CDSP-littoralis_Contig719 129342..129450 -
1680791493.5692327-CDS-P-littoralis_Contig719:129627..1299001680791493.5692327-CDS-P-littoralis_Contig719:129627..129900Pylaiella littoralis U1_48CDSP-littoralis_Contig719 129628..129900 -
1680791493.57929-CDS-P-littoralis_Contig719:130078..1301791680791493.57929-CDS-P-littoralis_Contig719:130078..130179Pylaiella littoralis U1_48CDSP-littoralis_Contig719 130079..130179 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791493.5944219-UTR-P-littoralis_Contig719:130179..1302001680791493.5944219-UTR-P-littoralis_Contig719:130179..130200Pylaiella littoralis U1_48UTRP-littoralis_Contig719 130180..130200 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig719.22.1prot_P-littoralis_Contig719.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig719 129342..130179 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig719.22.1

>prot_P-littoralis_Contig719.22.1 ID=prot_P-littoralis_Contig719.22.1|Name=mRNA_P-littoralis_Contig719.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=161bp
MEFGGDDSADGAGGAGSGVPDKLCDACTPPATSSYRCVVCNMTHTGGGCG
ASESFGQRDDFAHSLGDKARICVKCKPALEQQGRASNQKERAADGVVTSR
SRRKKSARVLKPISPAACDILEERRSSTVVLHKTDPFERDSELLARGSLD
LQQAAKLVVLN
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mRNA from alignment at P-littoralis_Contig719:129342..130200-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig719.22.1 ID=mRNA_P-littoralis_Contig719.22.1|Name=mRNA_P-littoralis_Contig719.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=859bp|location=Sequence derived from alignment at P-littoralis_Contig719:129342..130200- (Pylaiella littoralis U1_48)
GACGATGAACCGGACGGCAACATGGAGTTTGGTGGAGATGACAGCGCGGA
TGGCGCCGGTGGTGCTGGCTCTGGAGTACCAGATAAGCTTTGTGACGCAT
GCACGCCACCAGCCACTTCAAGGTACGGGGACGTACGTACCCCTGATTTT
CTTTCGGTTCATTTGAGCGGTTGCGGTTTGCCGTGGCCGAATTTTCGGTT
CGTTTGGGCGACTCCTAGGTAGCGATGAACAAGGTACGCAAACCAGCCAT
TTAAAACGAAGCACATGTCTCCGTTGTTTATCTTGTTACCTGTCAAGCAG
CTACCGTTGCGTAGTTTGCAACATGACGCACACAGGAGGCGGTTGCGGTG
CATCCGAGAGCTTTGGCCAACGCGACGACTTTGCCCACAGCCTTGGCGAC
AAAGCGAGAATCTGTGTGAAATGTAAGCCCGCCCTGGAGCAGCAGGGACG
AGCTTCCAACCAAAAGGAGAGGGCGGCTGACGGCGTTGTCACGTCCAGGA
GTAGACGAAAGAAATCTGCGCGTGTATTGAAGCCCATCAGCCCTGCTGCC
TGCGATATCTTGGAAGAGAGGAGGTGAAGCACCAGTACGCCTTCCTTTTG
CCTGTTTTGTCGGTTAGTGTCGATGTGTACCATAATTATGTGGTGCGTGG
TTGTTTTTCACATAGTTCACTATTCTATTACGTTTCTTCCTTGTAATCCG
CACCGCCTATTTACCTTCTTTACCCCAAACACACTCAACTATTTCAACAG
ATCGTCGACGGTCGTACTTCACAAGACCGACCCCTTTGAGAGAGACTCGG
AGCTTCTGGCACGCGGTAGCCTCGATCTTCAGCAAGCGGCTAAACTTGTT
GTGCTGAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig719:129342..130200-

>mRNA_P-littoralis_Contig719.22.1 ID=mRNA_P-littoralis_Contig719.22.1|Name=mRNA_P-littoralis_Contig719.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=483bp|location=Sequence derived from alignment at P-littoralis_Contig719:129342..130200- (Pylaiella littoralis U1_48)
ATGGAGTTTGGTGGAGATGACAGCGCGGATGGCGCCGGTGGTGCTGGCTC
TGGAGTACCAGATAAGCTTTGTGACGCATGCACGCCACCAGCCACTTCAA
GCTACCGTTGCGTAGTTTGCAACATGACGCACACAGGAGGCGGTTGCGGT
GCATCCGAGAGCTTTGGCCAACGCGACGACTTTGCCCACAGCCTTGGCGA
CAAAGCGAGAATCTGTGTGAAATGTAAGCCCGCCCTGGAGCAGCAGGGAC
GAGCTTCCAACCAAAAGGAGAGGGCGGCTGACGGCGTTGTCACGTCCAGG
AGTAGACGAAAGAAATCTGCGCGTGTATTGAAGCCCATCAGCCCTGCTGC
CTGCGATATCTTGGAAGAGAGGAGATCGTCGACGGTCGTACTTCACAAGA
CCGACCCCTTTGAGAGAGACTCGGAGCTTCTGGCACGCGGTAGCCTCGAT
CTTCAGCAAGCGGCTAAACTTGTTGTGCTGAAC
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