mRNA_P-littoralis_Contig719.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig719.20.1
Unique NamemRNA_P-littoralis_Contig719.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig719.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig719contigP-littoralis_Contig719:117750..118694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size248
Hectar predicted targeting categoryother localisation
Exons2
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791493.5022643-CDS-P-littoralis_Contig719:117749..1178521680791493.5022643-CDS-P-littoralis_Contig719:117749..117852Pylaiella littoralis U1_48CDSP-littoralis_Contig719 117750..117852 -
1680791493.5137563-CDS-P-littoralis_Contig719:118550..1186661680791493.5137563-CDS-P-littoralis_Contig719:118550..118666Pylaiella littoralis U1_48CDSP-littoralis_Contig719 118551..118666 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791493.5261369-UTR-P-littoralis_Contig719:118666..1186941680791493.5261369-UTR-P-littoralis_Contig719:118666..118694Pylaiella littoralis U1_48UTRP-littoralis_Contig719 118667..118694 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig719.20.1prot_P-littoralis_Contig719.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig719 117750..118666 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig719.20.1

>prot_P-littoralis_Contig719.20.1 ID=prot_P-littoralis_Contig719.20.1|Name=mRNA_P-littoralis_Contig719.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=73bp
MALRTAVQPFRPGTEGDRRVWWRCTAQAPNSTTICISCSAKKAIQEQGRT
WMPPGGMRRPSLLTAPTTAYRSA
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mRNA from alignment at P-littoralis_Contig719:117750..118694-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig719.20.1 ID=mRNA_P-littoralis_Contig719.20.1|Name=mRNA_P-littoralis_Contig719.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=945bp|location=Sequence derived from alignment at P-littoralis_Contig719:117750..118694- (Pylaiella littoralis U1_48)
CGCCGAGTGCACTGCCGGTAGGCTAGTCATGGCACTCCGGACAGCAGTGC
AACCGTTTCGTCCAGGCACGGAGGGAGACAGACGGGTCTGGTGGAGGTGT
ACGGCGCAGGCACCCAATAGTACAACAATCTGCATCTCCTGTAGGTGAGT
GTGTTCTGCAACCGGCTGTGGTTCAATTGTTTCGAGAGGTGCCGCCTGTT
GTTGCCGCAGCAGCGGCAGCGCTACGGCCGCCCTCCGCGTGTCATCGGCG
TTCGAATCCTTGAGCTGCAGTACAGAGGGAGAGCCTGATGAGGTAGATCA
TGCTGAGGAGGGAGAGAGCCTAGGAGGGAGAAGGAAAATGTCCGCATCGT
TGAAACAACCGTGGGCTACAAGATGCATTGGTTCACGCGGGGGTATACGT
GTATTCCACCGCAGCAGTGCTGTCATGGGGTGCGCAGCCGCGCAGCAGCA
GCAGTTACCATGTCATTATTGTCTAACTCGATCCGAAACTTTCGCATATT
TCATGTACCGAGCTTCTGACACCCTGCCGATTTCAAGCATCGCCTGTGGT
CGACACATGCAGGTCGTACTACTGTTTTGTTTCTCCCATTTTGTGTCTGT
CCACCGACACCGACGTTGTGCTTGGCCTGAATACGGCGAACTGATGTATT
TTTATCGCAAGGCGACTGCGTGTGTTGTCCTCCGACGCACCCGTGCCGGG
CGGCTATATAATACAAGTACGAAGAAGAACCGTTTTGGCAGATACGACTG
GAACACGACGTACCCGGTGTGGTGATGCCGATTTTCATATTGCGCACAAA
TTAATGTAAGAACCCGAACTGCTGTATTTTGGTGATCGGCAGTGCTAAGA
AGGCAATCCAAGAGCAGGGAAGGACGTGGATGCCACCGGGTGGGATGAGA
AGACCGTCCTTGCTTACTGCTCCAACAACGGCGTACCGTTCTGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig719:117750..118694-

>mRNA_P-littoralis_Contig719.20.1 ID=mRNA_P-littoralis_Contig719.20.1|Name=mRNA_P-littoralis_Contig719.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=219bp|location=Sequence derived from alignment at P-littoralis_Contig719:117750..118694- (Pylaiella littoralis U1_48)
ATGGCACTCCGGACAGCAGTGCAACCGTTTCGTCCAGGCACGGAGGGAGA
CAGACGGGTCTGGTGGAGGTGTACGGCGCAGGCACCCAATAGTACAACAA
TCTGCATCTCCTGTAGTGCTAAGAAGGCAATCCAAGAGCAGGGAAGGACG
TGGATGCCACCGGGTGGGATGAGAAGACCGTCCTTGCTTACTGCTCCAAC
AACGGCGTACCGTTCTGCA
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