mRNA_P-littoralis_Contig718.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig718.20.1
Unique NamemRNA_P-littoralis_Contig718.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig718.20.1 vs. uniprot
Match: A0A6H5JPS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPS5_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 6.970e-55
Identity = 83/106 (78.30%), Postives = 91/106 (85.85%), Query Frame = 1 
Query:   10 TMSGSANNRTVEMGPIWNHADAKTKANAYIDRRPWLKWTGH*STTVPNRMSTINVCNRTSLEGFVRGENRDIDMGPIWDQQDAVRKTRAFIEEHSFLEWNGHWNTT 327
            TMSGSA+ R VE+GPIWNH DA TKA AYID+ PWLKWTGH STTVP  MSTINV N TSLEGFVRGE+R++DMGPIW+QQDAV K RAFIEE+ FLEW GHWNTT
Sbjct:  264 TMSGSAHARDVEIGPIWNHGDANTKAKAYIDKHPWLKWTGHWSTTVPGVMSTINVRNLTSLEGFVRGEHRNVDMGPIWNQQDAVNKARAFIEEYPFLEWTGHWNTT 369
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BLAST of mRNA_P-littoralis_Contig718.20.1 vs. uniprot
Match: A0A6H5JVK0_9PHAE (GBP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVK0_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 4.810e-19
Identity = 41/96 (42.71%), Postives = 56/96 (58.33%), Query Frame = 1 
Query:   40 VEMGPIWNHADAKTKANAYIDRRPWLKWTGH*STTVPNRMSTINVCNRTSLEGFVRGENRDIDMGPIWDQQDAVRKTRAFIEEHSFLEWNGHWNTT 327
            V +GPIW+ ADA+ +A  +I   P  +WTG  +TT   + S I V ++ +     R    D+++GPIWDQ DA R+ R FI EH   EW G W TT
Sbjct:  680 VNVGPIWDQADAERRAREFIAEHPDQEWTGQWTTTSEGKASVIGVRDKAAAATRSR-RTHDVNVGPIWDQADAERRAREFIAEHPDQEWTGQWTTT 774
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BLAST of mRNA_P-littoralis_Contig718.20.1 vs. uniprot
Match: UPI000EF49D9A (mannan-binding lectin n=1 Tax=Tropicibacter sp. LMIT003 TaxID=2267683 RepID=UPI000EF49D9A)

HSP 1 Score: 67.4 bits (163), Expect = 3.610e-12
Identity = 39/99 (39.39%), Postives = 51/99 (51.52%), Query Frame = 1 
Query:   34 RTVEMGPIWNHADAKTKANAYIDRRPWL-KWTGH*STTVPNRMSTINVCNRTSLEGFVRGENRDIDMGPIWDQQDAVRKTRAFIEEHSFLEWNGHWNTT 327
            R++E GPIWN  DA+ K  A      W  KWTG   TTV  +MS   +         V+   + +++GPIW+QQDA RK  A I      +W G W TT
Sbjct:   23 RSIEAGPIWNQQDAQVKCPAIAAH--WKGKWTGQWWTTVQGKMSVCQI---------VKIPKKAVEVGPIWNQQDAQRKCPA-IAGAERAKWTGQWWTT 109
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BLAST of mRNA_P-littoralis_Contig718.20.1 vs. uniprot
Match: A0A7X9ZPX2_9SPHN (Uncharacterized protein n=1 Tax=Sphingomonas sp. G-3-2-10 TaxID=2728838 RepID=A0A7X9ZPX2_9SPHN)

HSP 1 Score: 67.8 bits (164), Expect = 4.420e-11
Identity = 43/103 (41.75%), Postives = 54/103 (52.43%), Query Frame = 1 
Query:   34 RTVEMGPIWNHADAKTKANAYIDRRPWLKWTGH*STTVPNRMSTINVCN-RTSLEGFVRGENRD----IDMGPIWDQQDAVRKTRAFIEEHSFLEWNGHWNTT 327
            R VE+GPIWN  DA+TK N    R     WTG+ +T      + ++VC  R    G  R + RD    I++GPIW+Q DAV K  A   E    EW G W TT
Sbjct:  219 RDVEVGPIWNQRDAETKCNNKA-REIGADWTGNWNTV----RAGVSVCGMRMRGGGGGRWDQRDVLRNIEVGPIWNQNDAVAKCNAKGRELR-AEWTGQWRTT 315
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig718.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JPS5_9PHAE6.970e-5578.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVK0_9PHAE4.810e-1942.71GBP domain-containing protein n=1 Tax=Ectocarpus s... [more]
UPI000EF49D9A3.610e-1239.39mannan-binding lectin n=1 Tax=Tropicibacter sp. LM... [more]
A0A7X9ZPX2_9SPHN4.420e-1141.75Uncharacterized protein n=1 Tax=Sphingomonas sp. G... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig718contigP-littoralis_Contig718:95592..95918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog998674.ATTE01000001_gene3961
PFAMsMVL
Model size327
Max annot lvl1224|Proteobacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue0.000158
EggNOG OGs2E3P9@1|root,32YMD@2|Bacteria,1R3FK@1224|Proteobacteria
DescriptionMannan-binding protein
Cds size171
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791493.448136-UTR-P-littoralis_Contig718:95591..957471680791493.448136-UTR-P-littoralis_Contig718:95591..95747Pylaiella littoralis U1_48UTRP-littoralis_Contig718 95592..95747 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791493.459576-CDS-P-littoralis_Contig718:95747..959181680791493.459576-CDS-P-littoralis_Contig718:95747..95918Pylaiella littoralis U1_48CDSP-littoralis_Contig718 95748..95918 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig718.20.1prot_P-littoralis_Contig718.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig718 95748..95918 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig718.20.1

>prot_P-littoralis_Contig718.20.1 ID=prot_P-littoralis_Contig718.20.1|Name=mRNA_P-littoralis_Contig718.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=57bp
MSTINVCNRTSLEGFVRGENRDIDMGPIWDQQDAVRKTRAFIEEHSFLEW
NGHWNTT
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mRNA from alignment at P-littoralis_Contig718:95592..95918+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig718.20.1 ID=mRNA_P-littoralis_Contig718.20.1|Name=mRNA_P-littoralis_Contig718.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=327bp|location=Sequence derived from alignment at P-littoralis_Contig718:95592..95918+ (Pylaiella littoralis U1_48)
GGGACCACGACAATGAGCGGATCGGCAAATAACCGTACTGTCGAGATGGG
TCCGATCTGGAACCATGCCGACGCCAAAACCAAAGCTAATGCGTACATCG
ACCGGCGCCCGTGGTTGAAATGGACTGGGCACTAGTCCACCACTGTCCCT
AACAGAATGTCCACAATCAACGTTTGTAACCGCACATCACTTGAGGGTTT
CGTGAGGGGGGAAAACCGCGATATCGACATGGGTCCCATCTGGGACCAGC
AGGACGCGGTGAGGAAGACCCGGGCCTTCATCGAGGAGCATTCGTTCCTG
GAATGGAACGGACACTGGAACACGACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig718:95592..95918+

>mRNA_P-littoralis_Contig718.20.1 ID=mRNA_P-littoralis_Contig718.20.1|Name=mRNA_P-littoralis_Contig718.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=171bp|location=Sequence derived from alignment at P-littoralis_Contig718:95592..95918+ (Pylaiella littoralis U1_48)
ATGTCCACAATCAACGTTTGTAACCGCACATCACTTGAGGGTTTCGTGAG
GGGGGAAAACCGCGATATCGACATGGGTCCCATCTGGGACCAGCAGGACG
CGGTGAGGAAGACCCGGGCCTTCATCGAGGAGCATTCGTTCCTGGAATGG
AACGGACACTGGAACACGACG
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