mRNA_P-littoralis_Contig718.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig718.1.1
Unique NamemRNA_P-littoralis_Contig718.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig718.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig718contigP-littoralis_Contig718:3912..5601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size445
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_008970.1
Cds size444
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791492.7106645-CDS-P-littoralis_Contig718:3911..40131680791492.7106645-CDS-P-littoralis_Contig718:3911..4013Pylaiella littoralis U1_48CDSP-littoralis_Contig718 3912..4013 +
1680791492.7255435-CDS-P-littoralis_Contig718:4397..45131680791492.7255435-CDS-P-littoralis_Contig718:4397..4513Pylaiella littoralis U1_48CDSP-littoralis_Contig718 4398..4513 +
1680791492.7354465-CDS-P-littoralis_Contig718:4812..48611680791492.7354465-CDS-P-littoralis_Contig718:4812..4861Pylaiella littoralis U1_48CDSP-littoralis_Contig718 4813..4861 +
1680791492.7534277-CDS-P-littoralis_Contig718:5424..56011680791492.7534277-CDS-P-littoralis_Contig718:5424..5601Pylaiella littoralis U1_48CDSP-littoralis_Contig718 5425..5601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig718.1.1prot_P-littoralis_Contig718.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig718 3912..5601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig718.1.1

>prot_P-littoralis_Contig718.1.1 ID=prot_P-littoralis_Contig718.1.1|Name=mRNA_P-littoralis_Contig718.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=148bp
MAAAAEKTTTFAEQRAFAAQVAKEKAAAQWAMQESAEEQREQEEPRRRVR
QRRTTRDGRDIFAVTFFDGYKPKRMDWLAKDAKMEADFGISGGVMSKSRS
EPCLRTNKRERRQQYHEEGPPKLLPFRTLFPLPAKGIDMRRETARNEA
back to top

mRNA from alignment at P-littoralis_Contig718:3912..5601+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig718.1.1 ID=mRNA_P-littoralis_Contig718.1.1|Name=mRNA_P-littoralis_Contig718.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1690bp|location=Sequence derived from alignment at P-littoralis_Contig718:3912..5601+ (Pylaiella littoralis U1_48)
ATGGCTGCTGCGGCGGAGAAAACGACGACGTTCGCGGAGCAGCGGGCCTT
TGCAGCCCAAGTGGCTAAGGAAAAGGCAGCGGCACAATGGGCAATGCAAG
AGGTAAATGAGAGCAGCTGATGGTCGCTCGTTCGCATCTACTTATATGAA
CATACAGCTCTCAATAACATATAAAGCAGTGCAGCGCAGGTGCTTGCACT
AAGCCCGTATGTCACAGCCTTTCGAGCGGCGGTGCTGGGCAACACCGTTC
ACTGTGGTGCTGAGCTCCTGTAATAAAAACATGTTTCAATGGCAGCATCG
TTGGTTGATGGCATTTTCGTATAACAGTAATAGCTTTAATTTAGTCTAGA
ATATGCCATATACACACACCCCGCTGTCGCTTTCTGGTATTCCCTGAGTT
TTTGGCCACTCATCACCAGCTCAATCGTTGTTTTTGTTCTCTCGGGGTCC
ACAATGTTTGGATGTTTCGGTGTTTCGTGTGCATAGAGCGCAGAGGAGCA
GCGAGAGCAGGAGGAACCACGACGACGTGTGAGGCAGCGGAGGACAACGC
GGGATGGAAGAGACATCTTCGCGGTGACCTTTTTCGACGGTTACAAACCC
AAGTGAGTACTGCTTGCAAGATTGTCAAGCTCCACGCCCCCGCCCCCGTA
TGGGTGCGGTTGTTTCCTCCTCGGCCGAGGATTGGTAGGCATGGAAGTCT
CGGTCGGCTTTGATACCCCCCCCTTTTGTCACGATACCGAGCGCGATAGA
CACAAGTGCGAAGTGAACTTCCGCGTGGAAAGGCTTAACGCCAACCCTCA
AGAAACACAGTTAAGCGGTGAAACTACAAACGTTCACATATGGGGTATAA
AAAAATCAGATGCCCCTGACACCTAGCACGCACGGCTTCATCCCCTCACA
GGAGAATGGACTGGCTTGCAAAAGACGCCAAAATGGAAGCGGACTTCGGG
GTCGAGCATCACCCGAAGGGCAGTTTGGGGCACCGTTTGCGTGAGGTGTG
TGGTGTGGCTGATGTTATCTCTATAGGGTACAGTTGCTGGTCTTTGCGCA
CGTGCTTGTCGTTTCGAGCGCAGCTGAACCAGAGTGACAACTAGAGACAA
GTTAATTTGCCAAGGCGCTACATTCTGCGGGAGGAGCTACTGGGGAAGTC
GGCGAATCCGTGCAAAAGGATACCAGGTATAGATGACCAAAACGATGCCG
GTTGTTCGTCACCAACACCTCACCGAGGGCATCGCGGGTCTGCTCTGTAC
GTTCACGGAGTTTTCGGCTTCCTGCGCCGTCGCGGGGCCGCTTGGTTTCC
GTAGTCACTGCTGTCTGGTTGTTCCCGCACCGTTGGTGGCGTATCTGGCG
TCGGATCCCTTCAGAACCGCTCAGGCTCCGAGGCTGTCGTGTTGTGTAGA
CAAACGTCCTGATAACAGCGAGAGGGCCCAGCGGGCATTACGCGCAACGG
GACACACTCCCTTTAGAAGAACTATGTATTAATGCTGTCCCGAAATATTC
GCTCCCGAGAAAGATAAGCGGAGGAGTGATGTCGAAGTCGCGCTCGGAGC
CTTGCCTCCGAACCAACAAACGCGAGCGGAGGCAGCAGTACCACGAGGAG
GGTCCGCCGAAGCTCCTTCCTTTCCGTACACTTTTCCCATTGCCGGCTAA
GGGGATCGACATGAGGAGAGAGACCGCTCGAAACGAGGCA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig718:3912..5601+

>mRNA_P-littoralis_Contig718.1.1 ID=mRNA_P-littoralis_Contig718.1.1|Name=mRNA_P-littoralis_Contig718.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=444bp|location=Sequence derived from alignment at P-littoralis_Contig718:3912..5601+ (Pylaiella littoralis U1_48)
ATGGCTGCTGCGGCGGAGAAAACGACGACGTTCGCGGAGCAGCGGGCCTT
TGCAGCCCAAGTGGCTAAGGAAAAGGCAGCGGCACAATGGGCAATGCAAG
AGAGCGCAGAGGAGCAGCGAGAGCAGGAGGAACCACGACGACGTGTGAGG
CAGCGGAGGACAACGCGGGATGGAAGAGACATCTTCGCGGTGACCTTTTT
CGACGGTTACAAACCCAAGAGAATGGACTGGCTTGCAAAAGACGCCAAAA
TGGAAGCGGACTTCGGGATAAGCGGAGGAGTGATGTCGAAGTCGCGCTCG
GAGCCTTGCCTCCGAACCAACAAACGCGAGCGGAGGCAGCAGTACCACGA
GGAGGGTCCGCCGAAGCTCCTTCCTTTCCGTACACTTTTCCCATTGCCGG
CTAAGGGGATCGACATGAGGAGAGAGACCGCTCGAAACGAGGCA
back to top