prot_P-littoralis_Contig118.115.7 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig118.115.7
Unique Nameprot_P-littoralis_Contig118.115.7
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length854
Homology
BLAST of mRNA_P-littoralis_Contig118.115.7 vs. uniprot
Match: D7FS94_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS94_ECTSI)

HSP 1 Score: 365 bits (936), Expect = 1.420e-113
Identity = 219/350 (62.57%), Postives = 240/350 (68.57%), Query Frame = 0
Query:    1 MTAARGENAGVRLHVGGLARGLDPKELAALIAAALPSG-ASPTAEIMRDASTGIERGFGYVSIPAGEGVKAGAEKAIAAYDGSRWRGNRIRVSIAKGDYLQRLKAEWDEAAEAKEAAALAAVARKS-----------PAAAPYKARQSLRLRRRPGERIILVDPTPIEWAKSPRQDARAWKKAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGPHRRKRGVLGARRRVEFPGREATCSTKCRELWRRHLQERGAEASAARLRSVDRLISGQGEAAAATAATAPGTAEVQDAQSKGALSQAGATEKQHAVEYMPVEGAADLAPEELPLADDIEFVWDDPTEETAGSG 338
            MTA RG++AGVRLHVGGLARG+DP ELAALIA  LPSG ASPTAEIMRDASTGIERGFGYVSIP GEGVKAGAE+AIAAYDG+RW+G +IRV  AKGDYLQRLKAEWD AA                          P A  YKAR  LRLRRRPGER++LVDPTPI WAK  R+D R W K +                                G HRRKRGVLGARRRVEFPGREATCSTKCRELWRRHLQER AEASAARLRSVDRLISGQG +AA+ AA   G A V       + S+  A ++  A EY+PVEGAADL PEE P ++ IEFVWDD  EE +GSG
Sbjct:    1 MTAERGDDAGVRLHVGGLARGVDPNELAALIARTLPSGTASPTAEIMRDASTGIERGFGYVSIPGGEGVKAGAERAIAAYDGARWKGGKIRVGFAKGDYLQRLKAEWDAAAXXXXXXXXXXXXXXXXXXXXPSKTPVPPAVAYKARPFLRLRRRPGERVVLVDPTPIAWAKPSRKDPRTWNKREEEGGEEGGDG----------------------GTHRRKRGVLGARRRVEFPGREATCSTKCRELWRRHLQERAAEASAARLRSVDRLISGQGVSAASAAAEEAGGAVVVPNGEAFSRSRE-AAQQSAAAEYLPVEGAADLGPEEPPPSEGIEFVWDDAAEEGSGSG 327          
BLAST of mRNA_P-littoralis_Contig118.115.7 vs. uniprot
Match: A0A6H5KVR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR0_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 8.240e-60
Identity = 137/204 (67.16%), Postives = 148/204 (72.55%), Query Frame = 0
Query:   46 MRDASTGIERGFGYVSIPAGEGVKAGAEKAIAAYDGSRWRGNRIRVSIAKGDYLQRLKAEWDEAAEAKEAAAL-----AAVARKSP--AAAPYKARQSLRLRRRPGERIILVDPTPIEWAKSPRQDARAWKKAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGPHRRKRGVLGARRRVEFPGREATCSTKCRELWRRHLQ 242
            MRDASTGIERGFGYVSIP GEGVKAGAE+AIAAY+G+RW+G +IRV  AKGDYLQRLKAEWD AA+            A    K+P  AA  YKAR  LRLRRRPGER++LVDPTPI WAK  R+D RAW K +XXXXXXXXXXXXXXXX                      RGVLG RRRVEFPGREATCSTKCRELWRRHLQ
Sbjct:    1 MRDASTGIERGFGYVSIPGGEGVKAGAERAIAAYNGARWKGGKIRVGFAKGDYLQRLKAEWDAAAKKXXXXXXXXXXXAGGPSKTPVPAAVAYKARPFLRLRRRPGERVVLVDPTPIAWAKPSRKDPRAWNKKEXXXXXXXXXXXXXXXX----------------------RGVLGGRRRVEFPGREATCSTKCRELWRRHLQ 182          
BLAST of mRNA_P-littoralis_Contig118.115.7 vs. uniprot
Match: A0A6H5KUQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUQ6_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 9.270e-25
Identity = 114/243 (46.91%), Postives = 133/243 (54.73%), Query Frame = 0
Query:  631 MPSLTDIFKVQDKVSAKKNKAEKEKDKGFKIASLFDSVKSA----------------ETGPGAXXXXXXXXXXXXXXXXXXXXGSETTKSSAAVVHAGEEGGINPMAA---EGRAAGAGLPTSNDLIPCLKGGL--SSSSNSASPSSALPASTNNRSHPGLTPPSAAAGAIPGTQSVLWRPLGDVVAVAARFVRTGKREDVEVTWLGERRSLTQDFKRKHKDAVKGRRGAGGAGSRAVSKKRR 852
            M +LTDIF V+DKVS+KKN+ EK+KDKGFKI SLFD+  +A                    GAXXXXXXXXXXXXXXXXXXXX                        A   EG+A  A   +S               +   + P   LP S        +             ++ LWRPL +VVA+AARF+RTGKREDVE  W+GERR+LTQDFKRKHKDAVKGRRGA G G RA SKKRR
Sbjct:    1 MSALTDIFTVKDKVSSKKNREEKDKDKGFKITSLFDAGLTAGXXXXXXXXXXXXXXXXXXAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVLVEGQARPAASLSSXXXXXXXXXXXXXGDAGGESQPGGTLPVSXXXXXXXXVV-----------VETALWRPLDEVVAIAARFMRTGKREDVEAAWIGERRALTQDFKRKHKDAVKGRRGAAGGGHRA-SKKRR 231          
BLAST of mRNA_P-littoralis_Contig118.115.7 vs. uniprot
Match: A0A835YZR3_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZR3_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 3.550e-17
Identity = 62/163 (38.04%), Postives = 94/163 (57.67%), Query Frame = 0
Query:    3 AARGENAGVRLHVGGLARGLDPKELAALIAAALPSGASPT--AEIMRDASTGIERGFGYVSIPAGEGVKAGAEKAIAAYDGSRWRGNRIRVSIAKGDYLQRLKAEWDEAAEAKEAAALAAVARKSPAAAPYKARQSL-----RLRRRPGERIILVDPTPIEWA 158
            AA       RLH+GG+   +   E+ AL +  L  G++ T   E+  DA+TGI RGFGYV +P      A A+ A+ A++G++W+G+++ V+ AK +YL+RLK +W E AE  EA       + +P       +Q L     R+R+RPG+  +LVDP P+E A
Sbjct:    2 AAEAVEGPTRLHIGGVPNSVAADEVRALFSKVLQGGSTGTIAVELQADATTGIRRGFGYVQLP----TAADAQSAMQAFNGTKWKGSKLSVAPAKDNYLERLKQQWKEDAEEAEALLHQPRPQPTPIGLAKLVKQGLPPRILRIRKRPGQPPLLVDPIPLEAA 160          
BLAST of mRNA_P-littoralis_Contig118.115.7 vs. uniprot
Match: A0A1Y1HXN5_KLENI (Protein with RRM/RBD/RNP motifs n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HXN5_KLENI)

HSP 1 Score: 64.7 bits (156), Expect = 8.150e-7
Identity = 42/98 (42.86%), Postives = 55/98 (56.12%), Query Frame = 0
Query:   11 VRLHVGGLARGLDPKELAALIAAALPSGASPTAEIM-RDASTGIERGFGYVSI-PAGEGVKAGAEKAIAAYDGSRWRGNRIRVSIAKGDYLQRLKAEW 106
            +RL VGGL   + P+EL A      P G    +EI+ +    G  RGFGYV + P  E   A   K  A Y+G++WRG R+RV  A+  +L RLKAEW
Sbjct:   31 IRLFVGGLPADVTPEELQARFQ---PFGKVVGSEIVPQKEDAGTCRGFGYVDLEPVSE---ASLSKCFAVYNGTKWRGGRLRVEKARASFLDRLKAEW 122          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig118.115.7 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FS94_ECTSI1.420e-11362.57RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KVR0_9PHAE8.240e-6067.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUQ6_9PHAE9.270e-2546.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YZR3_9STRA3.550e-1738.04RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A1Y1HXN5_KLENI8.150e-742.86Protein with RRM/RBD/RNP motifs n=1 Tax=Klebsormid... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 165..191
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 576..591
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 317..355
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 166..225
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 514..622
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 166..194
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 826..853
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 670..783
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 277..292
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 740..770
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 433..470
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 260..470
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 356..389
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 3..100
e-value: 3.6E-9
score: 38.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 11..96
score: 11.161792
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 11..97

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig118contigP-littoralis_Contig118:468794..492951 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig118.115.7mRNA_P-littoralis_Contig118.115.7Pylaiella littoralis U1_48mRNAP-littoralis_Contig118 468296..493085 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig118.115.7 ID=prot_P-littoralis_Contig118.115.7|Name=mRNA_P-littoralis_Contig118.115.7|organism=Pylaiella littoralis U1_48|type=polypeptide|length=854bp
MTAARGENAGVRLHVGGLARGLDPKELAALIAAALPSGASPTAEIMRDAS
TGIERGFGYVSIPAGEGVKAGAEKAIAAYDGSRWRGNRIRVSIAKGDYLQ
RLKAEWDEAAEAKEAAALAAVARKSPAAAPYKARQSLRLRRRPGERIILV
DPTPIEWAKSPRQDARAWKKAKEAKEAEERETEKRTQERKQRGEGEEDEE
EEEKGPHRRKRGVLGARRRVEFPGREATCSTKCRELWRRHLQERGAEASA
ARLRSVDRLISGQGEAAAATAATAPGTAEVQDAQSKGALSQAGATEKQHA
VEYMPVEGAADLAPEELPLADDIEFVWDDPTEETAGSGSDDVGEDEASGD
GEVPEDDEEQHQHEGATLRQGESGKESQTSRKEAEASDGDGESPTVDPRW
PAVNSDDHAPLSPPKVSATGGGAPTGRATSKKLERLGNNHGLELDDRLVE
LLSDGSDGDDSDEKAYGEGGYDYELETAKAAGVAATNAAGEGTVEGMADR
LQAETERNLGVLAQLFGGDSARPAGGTSGASSSSAGGLERGGAFGSDKTS
DATALPAPPTVETGAKRGDGGGAPLQVCEQQQQQQQQEGGGIEEGNVPLC
RAGVGTGRTEEGVPVEDKEGQQEEERFVAHMPSLTDIFKVQDKVSAKKNK
AEKEKDKGFKIASLFDSVKSAETGPGAGATGAEAGGGGGGGGFSFAFGSE
TTKSSAAVVHAGEEGGINPMAAEGRAAGAGLPTSNDLIPCLKGGLSSSSN
SASPSSALPASTNNRSHPGLTPPSAAAGAIPGTQSVLWRPLGDVVAVAAR
FVRTGKREDVEVTWLGERRSLTQDFKRKHKDAVKGRRGAGGAGSRAVSKK
RRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR035979RBD_domain_sf