mRNA_P-littoralis_Contig718.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig718.16.1
Unique NamemRNA_P-littoralis_Contig718.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig718.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig718contigP-littoralis_Contig718:88266..89068 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size803
Hectar predicted targeting categoryother localisation
Exons1
Cds size720
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791492.6500497-UTR-P-littoralis_Contig718:88265..883021680791492.6500497-UTR-P-littoralis_Contig718:88265..88302Pylaiella littoralis U1_48UTRP-littoralis_Contig718 88266..88302 -
1680791492.6760008-UTR-P-littoralis_Contig718:89022..890681680791492.6760008-UTR-P-littoralis_Contig718:89022..89068Pylaiella littoralis U1_48UTRP-littoralis_Contig718 89023..89068 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791492.6639771-CDS-P-littoralis_Contig718:88302..890221680791492.6639771-CDS-P-littoralis_Contig718:88302..89022Pylaiella littoralis U1_48CDSP-littoralis_Contig718 88303..89022 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig718.16.1prot_P-littoralis_Contig718.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig718 88303..89022 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig718.16.1

>prot_P-littoralis_Contig718.16.1 ID=prot_P-littoralis_Contig718.16.1|Name=mRNA_P-littoralis_Contig718.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=240bp
MADDGHVSKEATVHGEADGEPVREAPSDTEADRLEQEHERRHDATARQQP
PGVVYRPSGRGPATAYLDDRIIMDSRPRGASTDDEVMSRTTAAIHTALMN
ILEGKKDGEDIPPGATAIINALFNHRASSGPAASGRTKNNRGASSNNRGA
SSHSHGSSSGTRSRSAKRTTSRPPPPAGVNVDDHKRDGRPYCNHDGCKNT
GGTLLLGVFPESWQGQEKGQDHLCWLGFFEEARPRQQQR*
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mRNA from alignment at P-littoralis_Contig718:88266..89068-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig718.16.1 ID=mRNA_P-littoralis_Contig718.16.1|Name=mRNA_P-littoralis_Contig718.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=803bp|location=Sequence derived from alignment at P-littoralis_Contig718:88266..89068- (Pylaiella littoralis U1_48)
TCTGAAGTACCTATTTTCTTTCCACCCCCACGACATCGTCAACACCATGG
CTGACGATGGCCATGTCTCCAAAGAGGCTACAGTTCACGGCGAAGCCGAC
GGCGAACCAGTCCGGGAAGCTCCCTCCGACACCGAGGCTGACCGCCTTGA
ACAGGAGCACGAACGCCGTCATGATGCAACGGCACGTCAACAACCGCCGG
GCGTCGTCTATCGCCCCAGCGGTCGTGGTCCCGCAACCGCGTATTTAGAT
GACAGGATCATCATGGACAGCCGTCCCCGTGGCGCTTCGACCGACGATGA
AGTCATGTCACGTACAACCGCCGCGATACACACTGCGCTCATGAACATCC
TCGAGGGCAAGAAGGATGGCGAGGACATCCCTCCGGGAGCAACAGCGATC
ATCAATGCGCTGTTCAACCACAGGGCTTCGAGCGGACCCGCCGCCTCTGG
GCGAACCAAGAACAACCGCGGTGCGTCTTCAAACAACCGCGGAGCGTCGT
CCCACAGCCATGGATCGTCATCTGGCACCCGTTCTCGGTCCGCCAAGAGA
ACCACCAGTCGCCCGCCGCCTCCTGCTGGAGTCAACGTGGATGACCACAA
GCGGGACGGGCGACCGTACTGCAACCACGATGGCTGCAAGAATACCGGTG
GGACACTTCTTCTGGGAGTGTTTCCAGAAAGCTGGCAAGGGCAAGAAAAA
GGCCAAGACCACCTCTGCTGGCTCGGGTTCTTCGAAGAAGCCCGCCCACG
ACAGCAGCAGCGATGATGAGTGATGTTGCCCAGCTGCTGTAGCGCCTGTA
GTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig718:88266..89068-

>mRNA_P-littoralis_Contig718.16.1 ID=mRNA_P-littoralis_Contig718.16.1|Name=mRNA_P-littoralis_Contig718.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=720bp|location=Sequence derived from alignment at P-littoralis_Contig718:88266..89068- (Pylaiella littoralis U1_48)
ATGGCTGACGATGGCCATGTCTCCAAAGAGGCTACAGTTCACGGCGAAGC
CGACGGCGAACCAGTCCGGGAAGCTCCCTCCGACACCGAGGCTGACCGCC
TTGAACAGGAGCACGAACGCCGTCATGATGCAACGGCACGTCAACAACCG
CCGGGCGTCGTCTATCGCCCCAGCGGTCGTGGTCCCGCAACCGCGTATTT
AGATGACAGGATCATCATGGACAGCCGTCCCCGTGGCGCTTCGACCGACG
ATGAAGTCATGTCACGTACAACCGCCGCGATACACACTGCGCTCATGAAC
ATCCTCGAGGGCAAGAAGGATGGCGAGGACATCCCTCCGGGAGCAACAGC
GATCATCAATGCGCTGTTCAACCACAGGGCTTCGAGCGGACCCGCCGCCT
CTGGGCGAACCAAGAACAACCGCGGTGCGTCTTCAAACAACCGCGGAGCG
TCGTCCCACAGCCATGGATCGTCATCTGGCACCCGTTCTCGGTCCGCCAA
GAGAACCACCAGTCGCCCGCCGCCTCCTGCTGGAGTCAACGTGGATGACC
ACAAGCGGGACGGGCGACCGTACTGCAACCACGATGGCTGCAAGAATACC
GGTGGGACACTTCTTCTGGGAGTGTTTCCAGAAAGCTGGCAAGGGCAAGA
AAAAGGCCAAGACCACCTCTGCTGGCTCGGGTTCTTCGAAGAAGCCCGCC
CACGACAGCAGCAGCGATGA
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