mRNA_P-littoralis_Contig716.29.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig716.29.1
Unique NamemRNA_P-littoralis_Contig716.29.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig716.29.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 8.300e-29
Identity = 51/82 (62.20%), Postives = 62/82 (75.61%), Query Frame = 1 
Query:    1 EIAVPGFFRWAKDEGIVLPGWLTMDFMGRTTLEGDPVLFQDGKKLWSRFDEAFRIMKRDYNPIWDRFVRGQPGNNLPSGHTG 246
            EIAVPGFFRWA+D  I  P  LTM  +G T+ +G PVL+ +GKKLW++FD A   MK+  NPIWDR+V+GQPG NLPSG TG
Sbjct:   76 EIAVPGFFRWARDNDITFPSELTMKRIGATSTDGAPVLYTNGKKLWTKFDAAMLKMKKFCNPIWDRYVKGQPGGNLPSGQTG 157
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BLAST of mRNA_P-littoralis_Contig716.29.1 vs. uniprot
Match: D7FPI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI6_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 3.330e-25
Identity = 47/84 (55.95%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:    1 EIAVPGFFRWAK-----DEGIVLPGWLTMDFMGRTTLEGDPVLFQDGKKLWSRFDEAFRIMKRDYNPIWDRFVRGQPGNNLPSG 237
            +IAV GFF+W K     D+    P WLT + MGRT++ GD VLF  GKKLW RFD   R +K+ YNP+WD FV GQPG+ LPSG
Sbjct:   78 DIAVLGFFKWLKENLEADQYFSQP-WLTFEVMGRTSMSGDAVLFTHGKKLWKRFDNIMRALKKFYNPVWDSFVEGQPGDQLPSG 160
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BLAST of mRNA_P-littoralis_Contig716.29.1 vs. uniprot
Match: A0A6H5JUY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY9_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.460e-24
Identity = 43/69 (62.32%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    1 EIAVPGFFRWAKDEGIVLP-GWLTMDFMGRTTLEGDPVLFQDGKKLWSRFDEAFRIMKRDYNPIWDRFV 204
            +IAVPGFF+W K+ GIV+   WLT + MGRT+L G PVLF DGKKLW RFD+  R MK+ YN +WDR V
Sbjct:   76 DIAVPGFFKWLKENGIVIKQAWLTFEVMGRTSLNGAPVLFTDGKKLWKRFDKVMREMKKTYNKVWDRCV 144
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BLAST of mRNA_P-littoralis_Contig716.29.1 vs. uniprot
Match: A0A6H5JM89_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM89_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.860e-8
Identity = 25/71 (35.21%), Postives = 44/71 (61.97%), Query Frame = 1 
Query:   25 RWAKDEGIVLPGWLTMDFMGRTTLEGDPVLFQDGKKLWSRFDEAFRIMKRDYNPIWDRFVRGQPGNNLPSG 237
            +W ++ G    G    +     +L  +P L++DGKK+W+R+ +AFR +++D NP++D+ +  QPG   PSG
Sbjct:  111 QWHRNAGAEEQG--ERETAATESLYEEPKLYKDGKKIWARYLDAFRDIRKDANPVYDKTIGDQPGGTPPSG 179
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BLAST of mRNA_P-littoralis_Contig716.29.1 vs. uniprot
Match: A0A6H5KDP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDP2_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 1.050e-5
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    1 EIAVPGFFRWAKDEGIVLP-GWLTMDFMGRTTLEG 102
            +IAVPGFF+W K+ GIV+   WLT + MGRT+L G
Sbjct:   76 DIAVPGFFKWLKENGIVIKQAWLTFEVMGRTSLNG 110
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BLAST of mRNA_P-littoralis_Contig716.29.1 vs. uniprot
Match: A0A6H5KFI6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFI6_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 2.170e-5
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    1 EIAVPGFFRWAKDEGIVLP-GWLTMDFMGRTTLEG 102
            +IAVPGFF+W K+ GIV+   WLT + MGRT+L G
Sbjct:  124 DIAVPGFFKWLKENGIVIKQAWLTFEVMGRTSLNG 158
[Close]
BLAST of mRNA_P-littoralis_Contig716.29.1 vs. uniprot
Match: A0A6H5JZP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZP4_9PHAE)

HSP 1 Score: 49.7 bits (117), Expect = 2.900e-5
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    1 EIAVPGFFRWAKDEGIVLP-GWLTMDFMGRTTLEG 102
            +IAVPGFF+W K+ GIV+   WLT + MGRT+L G
Sbjct:   76 DIAVPGFFKWLKENGIVIKQAWLTFEVMGRTSLNG 110
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig716.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L481_9PHAE8.300e-2962.20Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FPI6_ECTSI3.330e-2555.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUY9_9PHAE1.460e-2462.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JM89_9PHAE2.860e-835.21Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDP2_9PHAE1.050e-560.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFI6_9PHAE2.170e-560.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JZP4_9PHAE2.900e-560.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig716contigP-littoralis_Contig716:123884..125465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size246
Hectar predicted targeting categoryother localisation
Exons3
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791490.8111112-CDS-P-littoralis_Contig716:123883..1239861680791490.8111112-CDS-P-littoralis_Contig716:123883..123986Pylaiella littoralis U1_48CDSP-littoralis_Contig716 123884..123986 +
1680791490.8230844-CDS-P-littoralis_Contig716:124844..1249381680791490.8230844-CDS-P-littoralis_Contig716:124844..124938Pylaiella littoralis U1_48CDSP-littoralis_Contig716 124845..124938 +
1680791490.8367748-CDS-P-littoralis_Contig716:125416..1254651680791490.8367748-CDS-P-littoralis_Contig716:125416..125465Pylaiella littoralis U1_48CDSP-littoralis_Contig716 125417..125465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig716.29.1prot_P-littoralis_Contig716.29.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig716 123884..125465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig716.29.1

>prot_P-littoralis_Contig716.29.1 ID=prot_P-littoralis_Contig716.29.1|Name=mRNA_P-littoralis_Contig716.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=82bp
EIAVPGFFRWAKDEGIVLPGWLTMDFMGRTTLEGDPVLFQDGKKLWSRFD
EAFRIMKRDYNPIWDRFVRGQPGNNLPSGHTG
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mRNA from alignment at P-littoralis_Contig716:123884..125465+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig716.29.1 ID=mRNA_P-littoralis_Contig716.29.1|Name=mRNA_P-littoralis_Contig716.29.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1582bp|location=Sequence derived from alignment at P-littoralis_Contig716:123884..125465+ (Pylaiella littoralis U1_48)
GAGATTGCCGTGCCAGGATTCTTCAGGTGGGCGAAAGACGAGGGCATCGT
GCTTCCTGGGTGGCTCACTATGGATTTCATGGGACGCACTACACTGGAGG
GAGGTGAGAAAAAGACCAAAATGTACCGCATGTGAACGATGCAACAACAG
CAGTAGATCCTCTACCCGTACAGCTGAAGTGTGACACACGTCACAGCACT
CCCTGCCTATCTATTACAGCAGTAGCTCTTCAGCCTGTGCAGCAGTAGCT
GTACTAGCTGTAGTTGTTATGCCTTTGGTACAGCAGCAGTTGTACTTTGA
ACAGGAATTGCAGTCTGGTTTGTTTCAATGTATCTGTTTTCAATGTGTGT
GTCGTGACGCAGCAGTACTTTTTCAGCACCTTTTCGCAGATCTTTTGCCC
GCACAGCAGGTGTGTATGTGTGTGTTGTCATCCCATCATTTCTGGGCGCC
GGTCTACACCTTTCGGTATGAAGTGGGTGCATCAGCCGGGGTCACACAGG
AGGAAGGTCACGCACGAGCTTTTTATCTTTTATTTGATTTATTGCACACA
CCTTTCCTCCTGCGGTACGTGCCTTTGATTTTTAATGCGAGTGGGTATAC
TTCGAAATATACGATACATATCATGTGACAGCTCTTCCTGCCTATCTACA
GCAGTGCGTCTCTTCTTGCCGTGCAGCAGCAGTCCCTGTGGCGTTTACTA
GTAGTCGATATTCTGCCTGTGCTATATCAGTACTACCGCAGTATGGTTTA
CCTCTGCTGTAGGTAGGACAATCTTGTTGATGTCTTCATCGAGTGGTCCG
CCGGTTGCGAAAAGTACTCACACCACAACGGACCATCTCCCCAGCGTTAG
AATTTATGTCAGCGCCGTTGTGCGTTTTTGCTGCTGCTGCGGTGCAAGCG
CATTTTATGGAAGAGTGCCCGCTGACGGTAATATCCTGGTTGTATCTGTC
GTGCTTCGCAGATCCGGTTCTCTTCCAAGACGGGAAGAAGCTGTGGAGTC
GGTTCGACGAGGCGTTTCGCATAATGAAGCGGGACTACAACCCCATCTGG
GACAGGTGCGATGGGGTGTTGTGACAGTAGAGGAATGTCGCCCTCCGTCG
CCTCGAGCAAATATTTAGTTTCGCCGTGCATGGTGTTGAGTGTATTGTGA
GTGCGTATATGTACACCGTTACCGCACGAGGATCGAAGTTAACTTTTAGA
ACTCGAAATGACATGATGCGCTGTGGGTAGAGGCGTGAGCTTTCTAAATC
GGGAGAATTTTCAACGGAATACATATTTGCACGTATAGCAATTCAGAACG
ATGTACAGTTTTGTCCGTATTTTGTTTGTGACCAGGTTGTCGCATAAAAT
TGAGCACGGCAACGAAACGCTTGAAACAGTTACAAACGCAGCGTATAGAA
CACAGCCTTCAAGGCCGCCAGCATCACAAACTTTATTGCTATGTATACCT
AGTGCAGGGAATCACAAACACCTCTGCTGTACAGTTTAGATAAAGGGAAT
CTTACAATGGTTCATCCTTCCCTCCTTGCCCAGATTCGTCAGGGGCCAGC
CGGGGAACAACCTTCCGTCTGGCCATACTGGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig716:123884..125465+

>mRNA_P-littoralis_Contig716.29.1 ID=mRNA_P-littoralis_Contig716.29.1|Name=mRNA_P-littoralis_Contig716.29.1|organism=Pylaiella littoralis U1_48|type=CDS|length=246bp|location=Sequence derived from alignment at P-littoralis_Contig716:123884..125465+ (Pylaiella littoralis U1_48)
GAGATTGCCGTGCCAGGATTCTTCAGGTGGGCGAAAGACGAGGGCATCGT
GCTTCCTGGGTGGCTCACTATGGATTTCATGGGACGCACTACACTGGAGG
GAGATCCGGTTCTCTTCCAAGACGGGAAGAAGCTGTGGAGTCGGTTCGAC
GAGGCGTTTCGCATAATGAAGCGGGACTACAACCCCATCTGGGACAGATT
CGTCAGGGGCCAGCCGGGGAACAACCTTCCGTCTGGCCATACTGGT
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