mRNA_P-littoralis_Contig716.26.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig716.26.2 vs. uniprot
Match: D7FY61_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY61_ECTSI) HSP 1 Score: 201 bits (510), Expect = 5.990e-57 Identity = 100/113 (88.50%), Postives = 108/113 (95.58%), Query Frame = 2
Query: 446 MMDGIRTEVVVIPYADRTFVVVTQLKKLGTLVMATSDAAGGMMGGSRGRRYSVQVLLGRRDDPLLCLYARQMLEQMKSEKPLLLAVCLKEDGRDTRTFQEVINRVLSLEGWSG 784
M+ GIRTEVVVIPYADRTFV+VTQ+KKLG L+MATSDAAGGMM GS GRRYSVQVLLGRRDDPLLCLYARQMLEQMKS+KPLLLAVCLKE+GRDT+TFQEVIN+VLSL GWSG
Sbjct: 22 MLSGIRTEVVVIPYADRTFVIVTQMKKLGNLLMATSDAAGGMMAGSGGRRYSVQVLLGRRDDPLLCLYARQMLEQMKSDKPLLLAVCLKEEGRDTKTFQEVINQVLSLGGWSG 134
BLAST of mRNA_P-littoralis_Contig716.26.2 vs. uniprot
Match: A0A835ZGZ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGZ8_9STRA) HSP 1 Score: 118 bits (296), Expect = 8.410e-28 Identity = 61/107 (57.01%), Postives = 85/107 (79.44%), Query Frame = 2
Query: 449 MDGIRTEVVVIPYADRTFVVVTQLKKLGTLVMATSDAAGGMMGGSRGRRYSVQVLLGRRDDPLLCLYARQMLEQMKSEKPLLLAVCLKEDGRDTRTFQEVINRVLSL 769
+ GI TE+VV ++DRT V VTQL+K+GT+++ TS+A+G MGG R ++V+ LLGRRDDPLL +YARQ+ EQM+ + PLLLA+ LKE+GRD+ TF V+N+VL+L
Sbjct: 12 LHGITTEIVVQSFSDRTMVNVTQLEKMGTMLLVTSEASG--MGG---RSFNVKTLLGRRDDPLLLVYARQLAEQMRLDHPLLLAIALKEEGRDSATFAAVVNKVLAL 113
BLAST of mRNA_P-littoralis_Contig716.26.2 vs. uniprot
Match: A0A7S2V894_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V894_9STRA) HSP 1 Score: 109 bits (272), Expect = 2.700e-24 Identity = 57/112 (50.89%), Postives = 79/112 (70.54%), Query Frame = 2
Query: 452 DGIRTEVVVIPYADRTFVVVTQLKKLGTLVMATSDAAGGMMGGSRGRR----YSVQVLLGRRDDPLLCLYARQMLEQMKS--EKPLLLAVCLKEDGRDTRTFQEVINRVLSL 769
+GI+TE++V+ +AD+ F++VTQLKK+GTLV +G S G R Y VLLGRRDDPLL +YARQ++E++ S KPLLL + LK +GRDT TFQEV+N ++ +
Sbjct: 23 NGIKTEILVMYFADKIFIIVTQLKKIGTLVHVQPGNEATSVGASMGDRPLGIYDTSVLLGRRDDPLLLIYARQIMEKICSTLNKPLLLGIALKNEGRDTETFQEVLNELIKM 134
BLAST of mRNA_P-littoralis_Contig716.26.2 vs. uniprot
Match: A0A7S2F3L5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F3L5_9STRA) HSP 1 Score: 103 bits (258), Expect = 2.930e-22 Identity = 63/157 (40.13%), Postives = 97/157 (61.78%), Query Frame = 2
Query: 326 SPVSCVLWPFVADERDTP--VNFAMQK--RTRRVLLSSLGRLLQMMDGIRTEVVVIPYADRTFVVVTQLKKLGTLVMATSDAAGGMMGGSRGRRYSVQVLLGRRDDPLLCLYARQMLEQMK--SEKPLLLAVCLKEDGRDTRTFQEVINRVLSLEGW 778
S V C+L P + TP + A++ R+R+ + ++G+ T+++V + DR FV++TQ+KK+GTLV A ++ MG R ++ VLLGRRDDPL+ +YARQM+EQ+ S PLL++V + +GRD RTF+ +IN VL L+ W
Sbjct: 5 SNVPCLLEPNTTNNAMTPDMLTSAVKSCFRSRQTAMK--------INGVHTDIIVQVFQDRIFVIITQIKKIGTLVYAVAEETS--MGS---RTFTANVLLGRRDDPLVLIYARQMIEQISATSSLPLLMSVSMTPEGRDARTFETIINVVLKLKCW 148
BLAST of mRNA_P-littoralis_Contig716.26.2 vs. uniprot
Match: A0A7S2B7E1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B7E1_9STRA) HSP 1 Score: 102 bits (254), Expect = 5.070e-22 Identity = 54/106 (50.94%), Postives = 78/106 (73.58%), Query Frame = 2
Query: 452 DGIRTEVVVIPYADRTFVVVTQLKKLGTLVMATSDAAGGMMGGSRGRRYSVQVLLGRRDDPLLCLYARQMLEQMKS---EKPLLLAVCLKEDGRDTRTFQEVINRV 760
DGI T++VV +ADR FV VTQ++K+GT++ A S+ + MG +R+ + L+GRRDDPLL LYARQ++EQ+ +KPLLLA+ LK++GR++ TFQ +IN V
Sbjct: 24 DGIHTDIVVQSFADRVFVTVTQIQKIGTMLFAVSEDSS--MGE---KRFDISTLVGRRDDPLLTLYARQLIEQIAKTGCDKPLLLAISLKDEGRESSTFQAIINIV 124
BLAST of mRNA_P-littoralis_Contig716.26.2 vs. uniprot
Match: A0A7S1TQ84_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQ84_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 4.290e-20 Identity = 58/130 (44.62%), Postives = 79/130 (60.77%), Query Frame = 2
Query: 413 VLLSSLGRLLQMMDGIRTEVVVIPYADRTFVVVTQLKKLGTLVMATSDAAGGMMGGSRGRR----YSVQVLLGRRDDPLLCLYARQMLEQMKS----EKPLLLAVCLKEDGRDTRTFQEVINRVLSLEGW 778
V++ R + + GI TE+VV + D FVV+TQLKKLGTL+M + RGR + +VLLG+RDDPLL LYARQ+ EQ+ + ++ ++L++ LKEDGR FQE IN VL L W
Sbjct: 18 VVMPQTRRKVVDIGGIETEIVVQGFQDAIFVVITQLKKLGTLIMTHIE---------RGRTGKCLFDARVLLGKRDDPLLVLYARQIAEQISTRTTYDRNVVLSIALKEDGRGPAAFQETINHVLDLPVW 138
BLAST of mRNA_P-littoralis_Contig716.26.2 vs. uniprot
Match: A0A482SY11_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SY11_9ARCH) HSP 1 Score: 80.5 bits (197), Expect = 1.760e-14 Identity = 45/101 (44.55%), Postives = 68/101 (67.33%), Query Frame = 2
Query: 473 VVIPYADRTFVVVTQLKKLGTLVMATSDAA--GGMMGGSRGRRYSVQVLLGRRDDPLLCLYARQMLEQMK--SEKPLLLAVCLKEDGRDTRTFQEVINRVL 763
V+I ++ FV++TQ+ K+G+++ A ++ GG+ R+ V+ +LGRRDDPLL LYARQ++E++ S K L+LAV LKE+GR FQ VINR +
Sbjct: 11 VLIVFSSNVFVIITQINKVGSMLKAWTEPKFDGGL-------RFMVENMLGRRDDPLLVLYARQLIERISIISPKQLILAVSLKEEGRGKEHFQNVINRTM 104
BLAST of mRNA_P-littoralis_Contig716.26.2 vs. uniprot
Match: A0A4D9CRY9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRY9_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 5.630e-13 Identity = 44/108 (40.74%), Postives = 70/108 (64.81%), Query Frame = 2
Query: 452 DGIRTEVVVIPYADRTFVVVTQLKKLGTLVMATSDAAGGMMGGSRGRRYSVQVLLGRRDDPLLCLYARQMLEQMK--SEKPLLLAVCLKEDGRDTRTFQEVINRVLSL 769
+G+ T+V + ++DR F+V++Q + GT++ A +D + G + + V VLLGRRDDPLL +YARQ++E + S +PLLL++ L+E RD TF++V V L
Sbjct: 21 NGVLTDVAIFNFSDRIFLVISQNARFGTVISAKADDSVARPGAAPS--FDVSVLLGRRDDPLLLIYARQLVETVSRSSSRPLLLSISLRE--RDPSTFEQVAAWVRPL 124
BLAST of mRNA_P-littoralis_Contig716.26.2 vs. uniprot
Match: A0A7S3WF90_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WF90_EMIHU) HSP 1 Score: 75.9 bits (185), Expect = 2.700e-12 Identity = 46/110 (41.82%), Postives = 69/110 (62.73%), Query Frame = 2
Query: 455 GIRTEVVVIPYADRTFVVVTQLKKLGTLVMATSDAAGGMMGGSRGRRYSVQVLLGRRDDPLLCLYARQMLEQMKSEKP--LLLAVCLKEDGRDTRTFQEVINRVLSLEGW 778
G+ T ++ YA+R FVVV+Q + LGTL+ AT ++A G+ G YS +VLLGRRDD L +YAR ++E + +P LLLA+ L + R TF EV+ + +++ W
Sbjct: 57 GVSTRLIATAYANRIFVVVSQRENLGTLISATRESATGLASGPG--CYSTRVLLGRRDDEALEVYARTLVELINKSRPADLLLALNLLDSSR--ATFHEVMRALDAIKVW 162
BLAST of mRNA_P-littoralis_Contig716.26.2 vs. uniprot
Match: W7T248_9STRA (Proteasome assembly chaperone 3 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T248_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 3.400e-12 Identity = 44/108 (40.74%), Postives = 69/108 (63.89%), Query Frame = 2
Query: 452 DGIRTEVVVIPYADRTFVVVTQLKKLGTLVMATSDAAGGMMGGSRGRRYSVQVLLGRRDDPLLCLYARQMLEQMK--SEKPLLLAVCLKEDGRDTRTFQEVINRVLSL 769
+G+ T+V + ++DR F+ ++Q + GTL+ A +D + G + + V VLLGRRDDPLL +YARQ++E + S +PLLL++ L+E RD TF++V V L
Sbjct: 81 NGVLTDVAIFNFSDRIFLTISQNARFGTLISAKADDSVARPGAAPS--FDVSVLLGRRDDPLLLIYARQLVETVSRSSSRPLLLSISLRE--RDPSTFEQVAAWVRPL 184 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig716.26.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig716.26.2 >prot_P-littoralis_Contig716.26.2 ID=prot_P-littoralis_Contig716.26.2|Name=mRNA_P-littoralis_Contig716.26.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=132bp MQKRTRRVLLSSLGRLLQMMDGIRTEVVVIPYADRTFVVVTQLKKLGTLVback to top mRNA from alignment at P-littoralis_Contig716:116819..120935- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig716.26.2 ID=mRNA_P-littoralis_Contig716.26.2|Name=mRNA_P-littoralis_Contig716.26.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4117bp|location=Sequence derived from alignment at P-littoralis_Contig716:116819..120935- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig716:116819..120935- >mRNA_P-littoralis_Contig716.26.2 ID=mRNA_P-littoralis_Contig716.26.2|Name=mRNA_P-littoralis_Contig716.26.2|organism=Pylaiella littoralis U1_48|type=CDS|length=396bp|location=Sequence derived from alignment at P-littoralis_Contig716:116819..120935- (Pylaiella littoralis U1_48)back to top |