mRNA_P-littoralis_Contig715.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig715.12.1
Unique NamemRNA_P-littoralis_Contig715.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig715.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig715contigP-littoralis_Contig715:38810..40038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size777
Hectar predicted targeting categoryother localisation
Exons2
Cds size777
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791489.7106802-CDS-P-littoralis_Contig715:38809..390071680791489.7106802-CDS-P-littoralis_Contig715:38809..39007Pylaiella littoralis U1_48CDSP-littoralis_Contig715 38810..39007 +
1680791489.7231536-CDS-P-littoralis_Contig715:39459..400381680791489.7231536-CDS-P-littoralis_Contig715:39459..40038Pylaiella littoralis U1_48CDSP-littoralis_Contig715 39460..40038 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig715.12.1prot_P-littoralis_Contig715.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig715 38810..40038 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig715.12.1

>prot_P-littoralis_Contig715.12.1 ID=prot_P-littoralis_Contig715.12.1|Name=mRNA_P-littoralis_Contig715.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=259bp
MDDDGDVESQLSEVVGSLSWWMMKNLWHESLPDEKLRLSMVDTILLQDGH
VLHWFFTSSKSGSILQRANARLDWDGVIAFLVQRARGVGGGRRAKDPYCS
FSAQGVIATGRRLREGRIYPVMLTAPDLKSLREKHNAHLLDEIVAIQPFL
AKTPFTGCGLFETEFERKGCKRSAQAALGTYELLQWPEEDVKWFDIFDPP
LGGSADGDSWFDRPAARGGVTFAEQRKRRSSSAKRVHGILHRILATTTTQ
MVEHVEREV
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mRNA from alignment at P-littoralis_Contig715:38810..40038+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig715.12.1 ID=mRNA_P-littoralis_Contig715.12.1|Name=mRNA_P-littoralis_Contig715.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1229bp|location=Sequence derived from alignment at P-littoralis_Contig715:38810..40038+ (Pylaiella littoralis U1_48)
ATGGATGACGATGGAGATGTGGAAAGCCAGCTATCAGAGGTGGTGGGTTC
CTTGTCGTGGTGGATGATGAAGAACTTGTGGCACGAAAGCTTGCCAGACG
AAAAACTCCGACTGTCAATGGTCGACACAATTCTGCTACAAGACGGCCAT
GTTTTGCACTGGTTCTTTACCAGTTCAAAATCTGGCAGCATCCTCCAGGT
GTGTGTACATACGTCCTTGTGCTGCAGGGCATCTGTCTAATGCTGAGGAT
GTGCTGAAACCGCGACCTGCTTTCGGTTAGTCTTGCACATACTGCTGTGC
TGCTGTGCGTTGGGAACAAATATTGTGGGAATTGTGTGTGGACCTTCCGA
AAATCGGCTGATGTCTCGATGTTTATGGTCCAACGCCAGCCAATGGCCAC
TGCGATAACACCTACACATGGATGGGGTAGAGTATTGTTCTCGACGTTTT
TGCAGAGACAATCAGCGAAAATGATTTTTGAAGATGATATCTCAGGGACC
CTTCGTAATGCAGCCACTGCCATGCTGCACAGCAATAGTGATATATGTGA
GAAATCCGCTTGCCCCCTATACATTCTCGCCAAAATATTCTTCGTCTAAC
ACCGTCCATTTTGCTTTTGCTCCTTTCACGACTCGGTCATACCCGTTCAG
CGAGCAAATGCGCGTCTAGATTGGGATGGGGTAATCGCGTTTCTCGTTCA
GCGCGCAAGGGGTGTCGGCGGGGGTAGAAGGGCGAAGGACCCCTACTGTT
CATTTTCAGCACAAGGAGTTATCGCCACGGGGAGAAGACTGAGAGAAGGC
CGGATTTACCCGGTGATGTTGACAGCCCCAGACCTCAAATCCCTCCGAGA
AAAGCACAATGCCCACCTCCTGGACGAGATTGTTGCAATACAGCCCTTTT
TGGCCAAGACCCCGTTCACCGGGTGTGGTCTTTTTGAAACAGAGTTTGAG
CGGAAGGGGTGCAAGCGTTCCGCTCAGGCGGCACTCGGCACGTACGAGCT
CCTGCAATGGCCGGAGGAGGATGTGAAGTGGTTCGACATATTTGATCCCC
CGTTGGGAGGTAGCGCTGATGGCGATAGCTGGTTCGACCGGCCGGCTGCG
CGCGGCGGTGTAACTTTTGCGGAGCAGCGAAAGAGGCGTAGCTCTTCCGC
AAAGCGAGTTCACGGCATCCTGCACCGAATACTGGCAACGACAACAACAC
AGATGGTTGAGCACGTCGAACGCGAGGTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig715:38810..40038+

>mRNA_P-littoralis_Contig715.12.1 ID=mRNA_P-littoralis_Contig715.12.1|Name=mRNA_P-littoralis_Contig715.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=777bp|location=Sequence derived from alignment at P-littoralis_Contig715:38810..40038+ (Pylaiella littoralis U1_48)
ATGGATGACGATGGAGATGTGGAAAGCCAGCTATCAGAGGTGGTGGGTTC
CTTGTCGTGGTGGATGATGAAGAACTTGTGGCACGAAAGCTTGCCAGACG
AAAAACTCCGACTGTCAATGGTCGACACAATTCTGCTACAAGACGGCCAT
GTTTTGCACTGGTTCTTTACCAGTTCAAAATCTGGCAGCATCCTCCAGCG
AGCAAATGCGCGTCTAGATTGGGATGGGGTAATCGCGTTTCTCGTTCAGC
GCGCAAGGGGTGTCGGCGGGGGTAGAAGGGCGAAGGACCCCTACTGTTCA
TTTTCAGCACAAGGAGTTATCGCCACGGGGAGAAGACTGAGAGAAGGCCG
GATTTACCCGGTGATGTTGACAGCCCCAGACCTCAAATCCCTCCGAGAAA
AGCACAATGCCCACCTCCTGGACGAGATTGTTGCAATACAGCCCTTTTTG
GCCAAGACCCCGTTCACCGGGTGTGGTCTTTTTGAAACAGAGTTTGAGCG
GAAGGGGTGCAAGCGTTCCGCTCAGGCGGCACTCGGCACGTACGAGCTCC
TGCAATGGCCGGAGGAGGATGTGAAGTGGTTCGACATATTTGATCCCCCG
TTGGGAGGTAGCGCTGATGGCGATAGCTGGTTCGACCGGCCGGCTGCGCG
CGGCGGTGTAACTTTTGCGGAGCAGCGAAAGAGGCGTAGCTCTTCCGCAA
AGCGAGTTCACGGCATCCTGCACCGAATACTGGCAACGACAACAACACAG
ATGGTTGAGCACGTCGAACGCGAGGTA
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