mRNA_P-littoralis_Contig715.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig715.6.1
Unique NamemRNA_P-littoralis_Contig715.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig715.6.1 vs. uniprot
Match: UPI0000161E59 (hypothetical protein n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E59)

HSP 1 Score: 537 bits (1384), Expect = 5.400e-190
Identity = 320/361 (88.64%), Postives = 329/361 (91.14%), Query Frame = 1
Query:    1 MDTGGDXXXXXXXXXXXXXXXXXXXSVAAMDIGDGADSDGASINEGGGDDGPGTTPMDTGGGGXXXXXXXXXXXXXXXRTPGEKTKRVKKPVGQRGLRSTTLSQELEEPILSCMEPFLENNRRASDELVEERRDTAPRAPNEPAGAGTIADAARFLAMLSHDKKDGIEIKEGVYSPRSSKSEIKSQYELDYAFDPSDIGVEVGKTTVTWGSKVRTVEAFDYGIYTLGDKKSKLTQWDVLENRRGSGVTLEQDLWRYIGQLALTYVVMQSTGVLEIENDGNVHDGMMLDVYGGLANAEKSLDGIDSLSQLGREELLRIKTDTDRVRDFALEIFTRSSVRDILPVPRDDKGEVRMLLNMFYRG 1083
            MDT GD XXXXXXXXXXXXXXXXXXSV AM IG+GADS             P TTPM+ GGG XXXXXXXXXXXXXXXRT G+KT RV KPVGQRGLRSTTL+QELEEPIL+CMEPFLENNRRASDELVEERRDTAPRAPN+PAG GTIADAARFLAMLSHDKKD IEIKEGVY PRSSKSEIKSQYELDYAFDPSDIGVEVG+TTVTWG+KV+TVEAFDYGIYTLGDKKSKLTQWDVLENR G GVTLEQDL RYIGQL LTYVVMQSTGV EIENDGNVHDGMMLDVYGGLANAEKSLDGIDSLSQLGREELLRIKTDTDRVRDFALEIFT SSVRDILPVPRDDKGEVRMLLNMFYRG
Sbjct:    1 MDTDGDGXXXXXXXXXXXXXXXXXXSVEAMAIGEGADSXXXXXXXXXXXXXPDTTPMEIGGGXXXXXXXXXXXXXXXXRTSGKKTARVNKPVGQRGLRSTTLAQELEEPILACMEPFLENNRRASDELVEERRDTAPRAPNKPAGTGTIADAARFLAMLSHDKKDSIEIKEGVYFPRSSKSEIKSQYELDYAFDPSDIGVEVGRTTVTWGNKVQTVEAFDYGIYTLGDKKSKLTQWDVLENRHGRGVTLEQDLRRYIGQLVLTYVVMQSTGVPEIENDGNVHDGMMLDVYGGLANAEKSLDGIDSLSQLGREELLRIKTDTDRVRDFALEIFTGSSVRDILPVPRDDKGEVRMLLNMFYRG 361          
BLAST of mRNA_P-littoralis_Contig715.6.1 vs. uniprot
Match: A0A6H5L073_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L073_9PHAE)

HSP 1 Score: 444 bits (1142), Expect = 2.600e-138
Identity = 278/350 (79.43%), Postives = 294/350 (84.00%), Query Frame = 1
Query:    1 MDTGGDXXXXXXXXXXXXXXXXXXXSVAAMDIGDGADSDGASINEGGGDDGPGTTPMDTGGGGXXXXXXXXXXXXXXXRTPGEKTKRVKKPVGQRGLRSTTLSQELEEPILSCMEPFLENNRRASDELVEERRDTAPRAPNEPAGAGTIADAARFLAMLSHDKKDGIEIKEGVYSPRSSKSEIKSQYELDYAFDPSDIGVEVGKTTVTWGSKVRTVEAFDYGIYTLGDKKSKLTQWDVLENRRGSGVTLEQDLWRYIGQLALTYVVMQSTGVLEIENDGNVHDGMMLDVYGGLANAEKSLDGIDSLSQLGREELLRIKTDTDRVRDFALEIFTRSSVRDILPVPRDDKGE 1050
            MDT GD XXXXXXXXXXXXXXXXXXS+ AM IG+GAD              P TTPM+ G   XXXXXXXXXXXXXXXRT GEKT RV KPVGQRGLRSTTL+QELEEPIL CMEPFLENNRRASDELVEERRDTAPR  ++PAGAGTIADAARFLAMLSHDKKDGIEIKEGVY PRSS   IKSQYELDYAF+PS IGVEVGKTTV W  KV+ VEAFDYG YTLGDK+ KLTQWDVLENRRGSGVTLEQDL RYIGQL LTYVVMQSTGV EIENDGNVHDGMMLDV G L  AEK+LDGID  SQLG+E+LL IK +TD+VRDFAL+IFT SSVRDILP+ R D  E
Sbjct:  551 MDTDGDGXXXXXXXXXXXXXXXXXXSMEAMAIGEGADXXXXXXXXXXXXXEPDTTPMEIGXXXXXXXXXXXXXXXXXXRTSGEKTARVNKPVGQRGLRSTTLAQELEEPILPCMEPFLENNRRASDELVEERRDTAPRTKSKPAGAGTIADAARFLAMLSHDKKDGIEIKEGVYFPRSSLGAIKSQYELDYAFNPSHIGVEVGKTTVMWKGKVQKVEAFDYGFYTLGDKEFKLTQWDVLENRRGSGVTLEQDLRRYIGQLVLTYVVMQSTGVPEIENDGNVHDGMMLDVDGALTRAEKNLDGIDRHSQLGKEKLLEIKKNTDKVRDFALKIFTSSSVRDILPLHRPDAEE 900          
BLAST of mRNA_P-littoralis_Contig715.6.1 vs. uniprot
Match: D8LJ27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ27_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 3.920e-23
Identity = 64/175 (36.57%), Postives = 98/175 (56.00%), Query Frame = 1
Query:  499 IEIKEGVYSPRSSKSEIKSQYELDYAFDPSDIGVEVGKTTVTWGSKVRTVEAFDYGIYTLGDKKSKLTQWDVLENRRGSGVTLEQDLWRYIGQLALTYVVMQSTGVLEIENDGNVHDGMMLDVYGGLANAEKSLDGIDSLSQLGREELLRIKTDTDRVRDFALEIFTRSSVRDIL 1023
            IEI +GVY  R+    ++  Y+  YAFDP +IGV + +T V   S++  V++ D+G YTL  ++S++TQW++LENR    VTL+ DL R+I  L   Y VM  + V  +     V  GM+ +    +  A +S D  D   ++   EL+ IK   D +RD +L +FT+  V   L
Sbjct:  106 IEISDGVYYKRAELRTLQYYYDKSYAFDPKNIGVVLSETGVKIDSRIHAVKSVDHGKYTLEGRESRITQWELLENRCDERVTLDTDLRRFILHLVTKYTVMMGSVVPALSG---VVTGMLWNPNDAIDRASRSGDDTDPERKMKISELMSIKVRVDTLRDLSLAVFTKIPVEATL 277          
BLAST of mRNA_P-littoralis_Contig715.6.1 vs. uniprot
Match: A0A6H5L6S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6S7_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 6.010e-21
Identity = 65/197 (32.99%), Postives = 105/197 (53.30%), Query Frame = 1
Query:  439 GTIADAARFLAMLSHDKKDGIEIKEGVYSPRSSKSEIKSQYELDYAFDPSDIGVEVGKTTVTWGSKVRTVEAFDYGIYTLGDKKSKLTQWDVLENRRGSGVTLEQDLWRYIGQLALTYVVMQSTGVLEIENDGNVHDGMMLDVYGGLANAEKSLDGIDSLS-QLGREELLRIKTDTDRVRDFALEIFTRSSVRDILP 1026
            G +AD      +      + +++ + V   RS    +K  ++ +Y F+P+ I V VG T V    ++  VE+FD+G Y L   K  +TQW++L+NRRG G TL+ +L R+I Q A  YVVM +  V    N G   +GM+ ++   +  A    D ID  S ++  EEL  ++   +++R  +LEIFT   + + LP
Sbjct:  184 GQVADRG----LCDASAPNSLKLNDKVGFKRSELPGLKYYFDKNYMFNPASIEVVVGSTRVKIDGRIFVVESFDHGKYNLAGHKP-ITQWELLQNRRGEGATLDDELRRFIIQQADDYVVMMARAVPYFHNCGIATEGMLWNIKEAVERARAHPDNIDVESNKMTLEELASLQEGHEKMRSLSLEIFTTLPLSETLP 375          
BLAST of mRNA_P-littoralis_Contig715.6.1 vs. uniprot
Match: D7FQV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV3_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 6.360e-15
Identity = 44/100 (44.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:  490 KDGIEIKEGVYSPRSSKSEIKSQYELDYAFDPSDIGVEVGKTTVTWGSKVRTVEAFDYGIYTLGDKKSKLTQWDVLENRRGSGVTLEQDLWRYIGQLALT 789
            +D IEI EGVY  R+    ++  Y+  Y FDP  IGV  G+T+V     V  V++ D G Y L    S +TQW++L NR G GVTL+ DL R+I  L  T
Sbjct:  103 EDDIEIFEGVYHKRTEIRHLRYYYDKSYMFDPKSIGVVFGETSVEIDGGVHVVKSVDRGKYALEGPDSTITQWELLNNRCGEGVTLDTDLRRFITHLTDT 202          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig715.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI0000161E595.400e-19088.64hypothetical protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5L073_9PHAE2.600e-13879.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ27_ECTSI3.920e-2336.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6S7_9PHAE6.010e-2132.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQV3_ECTSI6.360e-1544.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig715contigP-littoralis_Contig715:17497..18582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FHJ0
Model size1086
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.12e-10
EggNOG OGs2EVBK@1|root,2SXC2@2759|Eukaryota
Cds size1086
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791489.5505505-CDS-P-littoralis_Contig715:17496..185821680791489.5505505-CDS-P-littoralis_Contig715:17496..18582Pylaiella littoralis U1_48CDSP-littoralis_Contig715 17497..18582 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig715.6.1prot_P-littoralis_Contig715.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig715 17497..18582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig715.6.1

>prot_P-littoralis_Contig715.6.1 ID=prot_P-littoralis_Contig715.6.1|Name=mRNA_P-littoralis_Contig715.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=362bp
MDTGGDGGDGGDGRDGDGGSDGLDGSVAAMDIGDGADSDGASINEGGGDD
GPGTTPMDTGGGGGGGAGTGGGGAGGGGRTPGEKTKRVKKPVGQRGLRST
TLSQELEEPILSCMEPFLENNRRASDELVEERRDTAPRAPNEPAGAGTIA
DAARFLAMLSHDKKDGIEIKEGVYSPRSSKSEIKSQYELDYAFDPSDIGV
EVGKTTVTWGSKVRTVEAFDYGIYTLGDKKSKLTQWDVLENRRGSGVTLE
QDLWRYIGQLALTYVVMQSTGVLEIENDGNVHDGMMLDVYGGLANAEKSL
DGIDSLSQLGREELLRIKTDTDRVRDFALEIFTRSSVRDILPVPRDDKGE
VRMLLNMFYRG*
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mRNA from alignment at P-littoralis_Contig715:17497..18582-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig715.6.1 ID=mRNA_P-littoralis_Contig715.6.1|Name=mRNA_P-littoralis_Contig715.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1086bp|location=Sequence derived from alignment at P-littoralis_Contig715:17497..18582- (Pylaiella littoralis U1_48)
ATGGACACTGGTGGGGACGGCGGTGACGGTGGTGACGGCAGAGATGGTGA TGGGGGCAGCGACGGATTGGACGGATCTGTGGCGGCCATGGACATCGGCG ACGGCGCCGACAGCGATGGTGCCAGTATCAACGAAGGCGGTGGTGACGAC GGACCCGGTACCACACCCATGGACACCGGTGGTGGTGGCGGTGGTGGTGC TGGCACGGGCGGCGGTGGTGCTGGTGGTGGAGGCCGAACCCCTGGGGAGA AAACGAAAAGGGTCAAAAAGCCCGTGGGTCAAAGGGGCCTCAGATCCACC ACCCTTTCCCAGGAATTGGAAGAGCCAATTTTGTCTTGCATGGAGCCATT CTTGGAAAACAATCGGCGAGCTTCGGACGAGCTAGTTGAAGAGCGAAGGG ATACGGCGCCGCGTGCGCCCAACGAGCCTGCTGGGGCTGGTACGATCGCG GATGCCGCCAGGTTTCTCGCTATGCTATCTCACGACAAAAAAGATGGCAT CGAAATCAAGGAGGGGGTCTACTCCCCGCGTTCGAGCAAAAGTGAAATCA AATCCCAATACGAGTTGGACTACGCCTTCGATCCTTCAGACATCGGAGTG GAGGTGGGGAAGACAACGGTTACGTGGGGAAGCAAGGTGCGGACGGTTGA AGCTTTCGACTACGGCATCTACACGCTGGGCGACAAGAAATCCAAGCTGA CCCAATGGGATGTCCTGGAAAACCGACGTGGAAGCGGGGTGACACTTGAA CAAGACCTCTGGCGGTACATCGGACAGCTAGCGTTAACGTATGTTGTCAT GCAGAGCACCGGAGTCCTGGAGATCGAGAACGACGGTAACGTGCATGACG GGATGATGCTAGACGTCTACGGTGGCTTAGCCAATGCGGAGAAAAGCTTG GATGGTATCGATAGCCTCAGCCAGCTGGGGAGAGAGGAGCTGCTACGGAT CAAGACCGATACGGATAGGGTCCGGGACTTCGCTCTGGAAATCTTCACCA GATCGTCGGTACGAGATATACTTCCGGTACCTCGCGACGATAAGGGAGAG GTGAGGATGTTGCTAAATATGTTTTACAGAGGATAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig715:17497..18582-

>mRNA_P-littoralis_Contig715.6.1 ID=mRNA_P-littoralis_Contig715.6.1|Name=mRNA_P-littoralis_Contig715.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1086bp|location=Sequence derived from alignment at P-littoralis_Contig715:17497..18582- (Pylaiella littoralis U1_48)
ATGGACACTGGTGGGGACGGCGGTGACGGTGGTGACGGCAGAGATGGTGA
TGGGGGCAGCGACGGATTGGACGGATCTGTGGCGGCCATGGACATCGGCG
ACGGCGCCGACAGCGATGGTGCCAGTATCAACGAAGGCGGTGGTGACGAC
GGACCCGGTACCACACCCATGGACACCGGTGGTGGTGGCGGTGGTGGTGC
TGGCACGGGCGGCGGTGGTGCTGGTGGTGGAGGCCGAACCCCTGGGGAGA
AAACGAAAAGGGTCAAAAAGCCCGTGGGTCAAAGGGGCCTCAGATCCACC
ACCCTTTCCCAGGAATTGGAAGAGCCAATTTTGTCTTGCATGGAGCCATT
CTTGGAAAACAATCGGCGAGCTTCGGACGAGCTAGTTGAAGAGCGAAGGG
ATACGGCGCCGCGTGCGCCCAACGAGCCTGCTGGGGCTGGTACGATCGCG
GATGCCGCCAGGTTTCTCGCTATGCTATCTCACGACAAAAAAGATGGCAT
CGAAATCAAGGAGGGGGTCTACTCCCCGCGTTCGAGCAAAAGTGAAATCA
AATCCCAATACGAGTTGGACTACGCCTTCGATCCTTCAGACATCGGAGTG
GAGGTGGGGAAGACAACGGTTACGTGGGGAAGCAAGGTGCGGACGGTTGA
AGCTTTCGACTACGGCATCTACACGCTGGGCGACAAGAAATCCAAGCTGA
CCCAATGGGATGTCCTGGAAAACCGACGTGGAAGCGGGGTGACACTTGAA
CAAGACCTCTGGCGGTACATCGGACAGCTAGCGTTAACGTATGTTGTCAT
GCAGAGCACCGGAGTCCTGGAGATCGAGAACGACGGTAACGTGCATGACG
GGATGATGCTAGACGTCTACGGTGGCTTAGCCAATGCGGAGAAAAGCTTG
GATGGTATCGATAGCCTCAGCCAGCTGGGGAGAGAGGAGCTGCTACGGAT
CAAGACCGATACGGATAGGGTCCGGGACTTCGCTCTGGAAATCTTCACCA
GATCGTCGGTACGAGATATACTTCCGGTACCTCGCGACGATAAGGGAGAG
GTGAGGATGTTGCTAAATATGTTTTACAGAGGATAA
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