mRNA_P-littoralis_Contig714.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig714.11.1
Unique NamemRNA_P-littoralis_Contig714.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig714.11.1 vs. uniprot
Match: A0A6H5JD89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD89_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 4.530e-21
Identity = 43/64 (67.19%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    7 EVIPLPELTGSAASLAKMQGVQVPHVPVSSPAEIKKFNRTWMKFVDPSRKTSVVDFDRFALEWN 198
            E +PLPELTGSAA LAKMQGVQVPH+PV+S AE  KF   W++FVDP+ + +++DFD FALEWN
Sbjct:  415 EAVPLPELTGSAARLAKMQGVQVPHMPVTSAAEKAKFGDMWLEFVDPAGRQTLLDFDSFALEWN 478
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BLAST of mRNA_P-littoralis_Contig714.11.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 5.220e-21
Identity = 43/64 (67.19%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    7 EVIPLPELTGSAASLAKMQGVQVPHVPVSSPAEIKKFNRTWMKFVDPSRKTSVVDFDRFALEWN 198
            E +PLPELTGSAA LAKMQGVQVPH+PV+S AE  KF   W++FVDP+ + +++DFD FALEWN
Sbjct:  988 EAVPLPELTGSAARLAKMQGVQVPHMPVTSAAEKAKFGDMWLEFVDPAGRQTLLDFDSFALEWN 1051
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BLAST of mRNA_P-littoralis_Contig714.11.1 vs. uniprot
Match: A0A6H5KEU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU8_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.100e-8
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    7 EVIPLPELTGSAASLAKMQGVQVPHVPVSSPAEIKKF 117
            E +PLPELTGSAA LAKMQGVQVPH+PV+S AE  KF
Sbjct:  590 EAVPLPELTGSAARLAKMQGVQVPHMPVTSAAENSKF 626
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig714.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JD89_9PHAE4.530e-2167.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JET4_9PHAE5.220e-2167.193'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KEU8_9PHAE1.100e-878.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig714contigP-littoralis_Contig714:136214..136411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size199
Hectar predicted targeting categoryother localisation
Exons1
Cds size198
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791489.2759137-CDS-P-littoralis_Contig714:136213..1364111680791489.2759137-CDS-P-littoralis_Contig714:136213..136411Pylaiella littoralis U1_48CDSP-littoralis_Contig714 136214..136411 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig714.11.1prot_P-littoralis_Contig714.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig714 136214..136411 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig714.11.1

>prot_P-littoralis_Contig714.11.1 ID=prot_P-littoralis_Contig714.11.1|Name=mRNA_P-littoralis_Contig714.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=66bp
GGEVIPLPELTGSAASLAKMQGVQVPHVPVSSPAEIKKFNRTWMKFVDPS
RKTSVVDFDRFALEWN
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mRNA from alignment at P-littoralis_Contig714:136214..136411-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig714.11.1 ID=mRNA_P-littoralis_Contig714.11.1|Name=mRNA_P-littoralis_Contig714.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=198bp|location=Sequence derived from alignment at P-littoralis_Contig714:136214..136411- (Pylaiella littoralis U1_48)
GGGGGAGAGGTGATCCCGCTTCCCGAGTTAACGGGGTCGGCTGCCTCCCT
TGCGAAGATGCAGGGAGTGCAAGTACCGCACGTGCCAGTTTCCAGTCCAG
CTGAAATTAAGAAATTCAATCGTACGTGGATGAAGTTTGTGGACCCGTCG
CGGAAGACGTCGGTGGTAGACTTTGACCGCTTTGCGTTGGAATGGAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig714:136214..136411-

>mRNA_P-littoralis_Contig714.11.1 ID=mRNA_P-littoralis_Contig714.11.1|Name=mRNA_P-littoralis_Contig714.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=198bp|location=Sequence derived from alignment at P-littoralis_Contig714:136214..136411- (Pylaiella littoralis U1_48)
GGGGGAGAGGTGATCCCGCTTCCCGAGTTAACGGGGTCGGCTGCCTCCCT
TGCGAAGATGCAGGGAGTGCAAGTACCGCACGTGCCAGTTTCCAGTCCAG
CTGAAATTAAGAAATTCAATCGTACGTGGATGAAGTTTGTGGACCCGTCG
CGGAAGACGTCGGTGGTAGACTTTGACCGCTTTGCGTTGGAATGGAAC
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