mRNA_P-littoralis_Contig714.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig714.6.1
Unique NamemRNA_P-littoralis_Contig714.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig714.6.1 vs. uniprot
Match: A0A6H5JGN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGN3_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 7.470e-7
Identity = 25/62 (40.32%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:    1 GFTAGEIREARLAWTFLDESLKKEEDRAVLQRCKSPREAFDYLEQFYDPESEIATQRLYEKF 186
            G +  +I  +  A+ FL  +L +E D+AV +RC +P++A D L++ ++PES++ATQ L  KF
Sbjct:  198 GNSEAQIHRSLQAFHFLSSALVREPDKAVFERCVTPKQALDELDKVHNPESQVATQELLSKF 259
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig714.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JGN3_9PHAE7.470e-740.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig714contigP-littoralis_Contig714:75462..75655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size196
Hectar predicted targeting categoryother localisation
Exons1
Cds size192
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791489.235042-CDS-P-littoralis_Contig714:75461..756531680791489.235042-CDS-P-littoralis_Contig714:75461..75653Pylaiella littoralis U1_48CDSP-littoralis_Contig714 75462..75653 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig714.6.1prot_P-littoralis_Contig714.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig714 75462..75653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig714.6.1

>prot_P-littoralis_Contig714.6.1 ID=prot_P-littoralis_Contig714.6.1|Name=mRNA_P-littoralis_Contig714.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=64bp
GFTAGEIREARLAWTFLDESLKKEEDRAVLQRCKSPREAFDYLEQFYDPE
SEIATQRLYEKFHQ
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mRNA from alignment at P-littoralis_Contig714:75462..75655+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig714.6.1 ID=mRNA_P-littoralis_Contig714.6.1|Name=mRNA_P-littoralis_Contig714.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=194bp|location=Sequence derived from alignment at P-littoralis_Contig714:75462..75655+ (Pylaiella littoralis U1_48)
GGTTTCACGGCGGGAGAGATAAGAGAGGCCCGTCTTGCATGGACTTTTCT
CGACGAATCGCTGAAAAAGGAGGAAGACAGGGCGGTACTTCAGAGATGCA
AGTCACCAAGAGAAGCGTTCGACTACCTCGAGCAGTTCTACGACCCAGAG
AGTGAGATAGCCACGCAGAGACTGTACGAAAAGTTCCACCAATT
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Coding sequence (CDS) from alignment at P-littoralis_Contig714:75462..75655+

>mRNA_P-littoralis_Contig714.6.1 ID=mRNA_P-littoralis_Contig714.6.1|Name=mRNA_P-littoralis_Contig714.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=192bp|location=Sequence derived from alignment at P-littoralis_Contig714:75462..75655+ (Pylaiella littoralis U1_48)
GGTTTCACGGCGGGAGAGATAAGAGAGGCCCGTCTTGCATGGACTTTTCT
CGACGAATCGCTGAAAAAGGAGGAAGACAGGGCGGTACTTCAGAGATGCA
AGTCACCAAGAGAAGCGTTCGACTACCTCGAGCAGTTCTACGACCCAGAG
AGTGAGATAGCCACGCAGAGACTGTACGAAAAGTTCCACCAA
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