mRNA_P-littoralis_Contig714.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig714.3.1
Unique NamemRNA_P-littoralis_Contig714.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig714.3.1 vs. uniprot
Match: A0A6H5JN01_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN01_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 7.370e-37
Identity = 88/173 (50.87%), Postives = 116/173 (67.05%), Query Frame = 3 
Query:   69 AIRCLCASL-------SGFP-AATGGLFFLGDTGAVIHAVSNDEHVYNRRAPRRGETLLMVGDGECLPVSCFGDLDLVLHCRYDVRVTLRNVAVVPKLVLDVISFSVIQKAKIPILLDERGATLLDGKVTFAMHENGSFVEGTRVP--PSTRSPPAPIVAAV-MRPGRPKSMN 554
            A+R +C++L       + FP    G   F+GD+GAVIHAVS+ E VYNR  P   E  LMVGDG C+PVS FGDLDL+LHC  DV VTL+NVAV   LVL++IS + +Q+    I+LD  GA+ ++GKV F  +++G+FV+ TRV   P   S P P++AA  MRPG P+SMN
Sbjct:   65 ALRFVCSALPPAHVVTADFPNPRPGATVFMGDSGAVIHAVSSGEKVYNRGEPGPDERRLMVGDGACMPVSFFGDLDLLLHCDEDVLVTLKNVAVAHGLVLNLISLNRVQERH-RIVLDHAGASSMEGKVKFTKYDDGNFVQATRVAHGPRRDSRPLPVLAAAAMRPGPPRSMN 236
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BLAST of mRNA_P-littoralis_Contig714.3.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 4.790e-31
Identity = 66/146 (45.21%), Postives = 97/146 (66.44%), Query Frame = 3 
Query:  117 GGLFFLGDTGAVIHAVSNDEHVYNRRAPRRGETLLMVGDGECLPVSCFGDLDLVLHCRYDVRVTLRNVAVVPKLVLDVISFSVIQKAKIPILLDERGATLLDGKVTFAMHENGSFVEGTRVPPSTRSPPAPIVAAVMRPGRPKSMN 554
            G   ++GD+ + +HA S+  HVYN R P   ET L +GDG  L   CFG LD+V HCR DV VT++++AVVP L  D++S +VIQ+    +LL+  G  +L+G+V F+    G++++ TR+     SPPA +VAA +RPGRP+S+N
Sbjct:   12 GSTVWIGDSASTVHATSDGTHVYNTRPPLAEETFLFIGDGRKLKAECFGSLDVVFHCREDVLVTMKDIAVVPDLAFDLVSLNVIQETH-DLLLNSAGTWILNGRVHFSKLPTGNYIQATRIAHGA-SPPA-MVAATVRPGRPRSIN 154
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig714.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JN01_9PHAE7.370e-3750.87Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCD8_9PHAE4.790e-3145.21Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig714contigP-littoralis_Contig714:28121..28674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size555
Hectar predicted targeting categoryother localisation
Exons1
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791489.1862323-CDS-P-littoralis_Contig714:28120..284531680791489.1862323-CDS-P-littoralis_Contig714:28120..28453Pylaiella littoralis U1_48CDSP-littoralis_Contig714 28121..28453 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791489.2044299-UTR-P-littoralis_Contig714:28453..286741680791489.2044299-UTR-P-littoralis_Contig714:28453..28674Pylaiella littoralis U1_48UTRP-littoralis_Contig714 28454..28674 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig714.3.1prot_P-littoralis_Contig714.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig714 28121..28453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig714.3.1

>prot_P-littoralis_Contig714.3.1 ID=prot_P-littoralis_Contig714.3.1|Name=mRNA_P-littoralis_Contig714.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=111bp
MVGDGECLPVSCFGDLDLVLHCRYDVRVTLRNVAVVPKLVLDVISFSVIQ
KAKIPILLDERGATLLDGKVTFAMHENGSFVEGTRVPPSTRSPPAPIVAA
VMRPGRPKSMN
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mRNA from alignment at P-littoralis_Contig714:28121..28674-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig714.3.1 ID=mRNA_P-littoralis_Contig714.3.1|Name=mRNA_P-littoralis_Contig714.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=554bp|location=Sequence derived from alignment at P-littoralis_Contig714:28121..28674- (Pylaiella littoralis U1_48)
GAGCAGATTGACTCTTCCGCAGACGGGGACTCCGGTGGCGTGATTTGGGG
CGGAATGTTCGCGCTTCAGCTATACGCTGCCTTTGCGCCTCCCTCTCAGG
TTTTCCAGCCGCGACCGGGGGCCTCTTTTTTCTGGGAGACACGGGCGCGG
TAATTCATGCCGTTTCCAACGATGAACACGTCTATAATCGGCGTGCGCCG
CGCCGCGGAGAGACGCTTCTCATGGTGGGTGACGGGGAGTGTCTGCCTGT
ATCGTGCTTTGGGGATTTGGACCTGGTGCTTCATTGCCGTTACGACGTGC
GGGTGACTCTGCGCAACGTAGCGGTCGTCCCGAAATTGGTGTTGGATGTC
ATCTCGTTCAGCGTCATCCAGAAGGCAAAGATACCAATACTGCTGGATGA
GAGGGGGGCGACGCTGCTCGACGGCAAGGTCACCTTCGCCATGCACGAGA
ACGGTAGTTTTGTCGAGGGTACTCGTGTTCCCCCCAGTACCCGTTCTCCG
CCGGCGCCGATTGTTGCGGCCGTGATGCGGCCGGGCCGGCCCAAGAGCAT
GAAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig714:28121..28674-

>mRNA_P-littoralis_Contig714.3.1 ID=mRNA_P-littoralis_Contig714.3.1|Name=mRNA_P-littoralis_Contig714.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=333bp|location=Sequence derived from alignment at P-littoralis_Contig714:28121..28674- (Pylaiella littoralis U1_48)
ATGGTGGGTGACGGGGAGTGTCTGCCTGTATCGTGCTTTGGGGATTTGGA
CCTGGTGCTTCATTGCCGTTACGACGTGCGGGTGACTCTGCGCAACGTAG
CGGTCGTCCCGAAATTGGTGTTGGATGTCATCTCGTTCAGCGTCATCCAG
AAGGCAAAGATACCAATACTGCTGGATGAGAGGGGGGCGACGCTGCTCGA
CGGCAAGGTCACCTTCGCCATGCACGAGAACGGTAGTTTTGTCGAGGGTA
CTCGTGTTCCCCCCAGTACCCGTTCTCCGCCGGCGCCGATTGTTGCGGCC
GTGATGCGGCCGGGCCGGCCCAAGAGCATGAAT
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