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Homology
BLAST of mRNA_P-littoralis_Contig118.91.2 vs. uniprot
Match: A0A6H5KKS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKS0_9PHAE) HSP 1 Score: 385 bits (990), Expect = 3.140e-125 Identity = 188/227 (82.82%), Postives = 204/227 (89.87%), Query Frame = 1
Query: 37 MYATSLPPRPNPHARTAENYAPRFSPDELPLLPANWIPSWRSPPSKIWGD-VGVKRSDNGATAAAASYASAATSAARPQTTGSILFVKDSAAREMWGSLRENCTGRLHSVPTHNISDRSIDSGLIPRHLLDGSVPPPVGKRASSLDYFPPCERPQTVPAIRMGHQFSRLLRDTSTKRLDTYKRGGVLRDGPVRIVRHTSKDRTYMKKSSHRNPRSISRNVLGGFCTS 714
MYATSLPPRPNPHARTAENYAPRFSPDELPLLP NW+PSWRSPPSKIW D GVKR +NGAT AA Y S + +AARP+TTGSI FV+DS+AREMWG+LR+NCTGRLH+V THNISDRSIDSGLIP HLLDGSVPPP GKRA+SLDYFPPC RP TVPAIRMGHQ+ RL+RDT KRL+ YKRG VLRDGPVRIVRHTSKDRT+MKKS+HRNPR ISRNVLGGFCTS
Sbjct: 1 MYATSLPPRPNPHARTAENYAPRFSPDELPLLPVNWVPSWRSPPSKIWEDPAGVKRGENGATTAATCYVSESAAAARPRTTGSIGFVRDSSAREMWGTLRDNCTGRLHAVQTHNISDRSIDSGLIPPHLLDGSVPPPQGKRATSLDYFPPCVRPATVPAIRMGHQY-RLIRDTPAKRLEAYKRGAVLRDGPVRIVRHTSKDRTFMKKSAHRNPRGISRNVLGGFCTS 226
BLAST of mRNA_P-littoralis_Contig118.91.2 vs. uniprot
Match: D8LIB8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIB8_ECTSI) HSP 1 Score: 188 bits (478), Expect = 4.740e-52 Identity = 99/148 (66.89%), Postives = 105/148 (70.95%), Query Frame = 1
Query: 367 THNISDRSIDSGLIPRHLLDGSVPPPVGKRASSLDYFPPCERPQTVPAIRMGHQFSRLLRDTSTKRLDTYKRGGVLRDGPVRIVR--------------------------------HTSKDRTYMKKSSHRNPRSISRNVLGGFCTS 714
THNISDRSIDSGLIP HLLDGSVPPP GKRA+SLDYFPPC RP TVPAIRMGHQ+ RL+RDT KRL+ YKRG VLRDGPVRIV HTSKDRT+MKKS+HRNPR ISRNVLGGFCTS
Sbjct: 4 THNISDRSIDSGLIPPHLLDGSVPPPQGKRATSLDYFPPCVRPATVPAIRMGHQY-RLIRDTPAKRLEAYKRGAVLRDGPVRIVSADYHWLHAICGQQPRPLPTGNDQQSESGSIPLHTSKDRTFMKKSAHRNPRGISRNVLGGFCTS 150
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 2652 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-24_001550.1 |
| Cds size | 681 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789495.2649384-UTR-P-littoralis_Contig118:409386..409422 | 1680789495.2649384-UTR-P-littoralis_Contig118:409386..409422 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig118 409387..409422 + |
| 1680789495.3224816-UTR-P-littoralis_Contig118:414356..416291 | 1680789495.3224816-UTR-P-littoralis_Contig118:414356..416291 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig118 414357..416291 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789495.2748914-CDS-P-littoralis_Contig118:409422..409664 | 1680789495.2748914-CDS-P-littoralis_Contig118:409422..409664 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig118 409423..409664 + |
| 1680789495.2836785-CDS-P-littoralis_Contig118:409966..410054 | 1680789495.2836785-CDS-P-littoralis_Contig118:409966..410054 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig118 409967..410054 + |
| 1680789495.2946088-CDS-P-littoralis_Contig118:411626..411793 | 1680789495.2946088-CDS-P-littoralis_Contig118:411626..411793 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig118 411627..411793 + |
| 1680789495.3034613-CDS-P-littoralis_Contig118:412249..412336 | 1680789495.3034613-CDS-P-littoralis_Contig118:412249..412336 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig118 412250..412336 + |
| 1680789495.3115742-CDS-P-littoralis_Contig118:414259..414356 | 1680789495.3115742-CDS-P-littoralis_Contig118:414259..414356 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig118 414260..414356 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig118.91.2 >prot_P-littoralis_Contig118.91.2 ID=prot_P-littoralis_Contig118.91.2|Name=mRNA_P-littoralis_Contig118.91.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=227bp
MYATSLPPRPNPHARTAENYAPRFSPDELPLLPANWIPSWRSPPSKIWGD VGVKRSDNGATAAAASYASAATSAARPQTTGSILFVKDSAAREMWGSLRE NCTGRLHSVPTHNISDRSIDSGLIPRHLLDGSVPPPVGKRASSLDYFPPC ERPQTVPAIRMGHQFSRLLRDTSTKRLDTYKRGGVLRDGPVRIVRHTSKD RTYMKKSSHRNPRSISRNVLGGFCTS* back to topmRNA from alignment at P-littoralis_Contig118:409387..416291+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig118.91.2 ID=mRNA_P-littoralis_Contig118.91.2|Name=mRNA_P-littoralis_Contig118.91.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=6905bp|location=Sequence derived from alignment at P-littoralis_Contig118:409387..416291+ (Pylaiella littoralis U1_48) CACCTATCCCTGACTGCTGCTGGCAGCTCGAGCGACATGTACGCCACAAG
CCTCCCCCCACGCCCTAATCCTCACGCCCGAACCGCAGAGAACTACGCAC
CACGGTTCTCTCCGGACGAGCTTCCCCTGTTGCCAGCGAACTGGATTCCT
TCTTGGAGGTCTCCTCCTTCCAAAATATGGGGAGACGTTGGCGTCAAGCG
TAGTGACAACGGGGCAACTGCTGCTGCTGCTTCTTACGCCTCGGCCGCCA
CTTCCGCCGCCCGACCCCAGACGACGGGGTAAGAAGGACAAAGGAATCTT
GCGTTGTGATATTCGTAGATGGGGATGAACAAAGCAAATATACAGGTCGG
GGCAGCAGCACCACAACAGAGAAGGGGCTGGGTTAAGAATTGAAAGGTTC
GGGGCAGCAACACAGCCGTATTCCATCTCTGTTCTGCATGCGTTGCACCG
GTCTAAGACGGAACCAGCACACAACCCATATTCATATCTGCGTAAACGCC
GCACCCCGTCACCTTTGACACCTGCTCAATGATGTCCTTGGATTTTCGTC
CTGTTTGTTGGCTCTCGTCGGCACTAACAGATCGATTTTATTTGTGAAGG
ACTCGGCTGCGAGAGAGATGTGGGGCTCGCTTCGCGAAAATTGCACCGGG
CGACTCCACTCCGTACCGGTGGGTCCAACGGATAAATGTACAGTAGTCCA
ACTCGACAACAGTAGTTAGTTGTGCGCAAGCCCAATTTTTGTACCTACAT
AAGTATTCAAGGTTAGGAGAGCGCTTGAAAATACGGTACCTCTTAACGGG
CCCGTCCTACAGCAGTATCCTGTGGTCTAAGTATGGGCCGGAACAATCGG
ACTGGGAGTGTTTTGGGCCTGAAAAATTGGCGAGCTGGCATTCCTTTGGT
TGAGCATGTTTTACTGAGCGCAGGTCATCCTTTGGCTACTCGCACCTAAA
TGTGAACGCGCAATACTTAAGTAGAGATACGTTTTGCCTTCAACGTTTCA
AATCTTGGTTCAAACACCTTTGAGATAAGCGGAACCGCACGCTTGATGAA
AACACGCTATGACAACCTGGACTTGTCACGGCGACGGAAGAATCCTGCAT
ATTTGATGCTTCTGCAAATTTATCCTGATGCTCAAGTTTTTGTTGTGGTA
TATGTAAAGGAATTATTTGAGTAAATGCCAACAACTGAGCTCGGAGAACC
GAAACGAATCGTACCCCGGAGGCAAAGCGGGGACTCCTGCACTTATGGTA
ATATATATCACACGGTGTATGGGCCGGGTCGTATGTAATATTTACTTCGT
AGCATATGCGTAGTACTTCGAGTATACATTTATATTCGTAGTAGGAAATT
AATCTATGCTGCAAATACTTACAGCGTTCATTTCGAACAAGCTCACTTTG
GCCTCCCGGGACCCTCAGCAAGGGAATGTTTACTGGGGGTGCCACAAGGG
TTGATGTATTGTTGATCTGGTTGGCAGCCAAATGTTTTCTATGGTCACCG
ATTTATTTCTGTTGTTGTATGGTGTCCCGCTCTGTATCGTTGCACTGGGA
AATTGAATGGAAATATATCGTTGCGCGCACATTGTTACAGGTAACAATGG
CAAACCTAAGGGCGGCGTAGAGTTCCTCGCTCAGGTATACAGGCTGCAAC
TTTCTGCGCTCCGAAAATCGTTATACCAGCTGGTAGATTATATGGTGCAT
GTATACAGCATAATACACAAAACAAGCTTGGTGTAATTCGCTTCACGTCT
TCTGGGGTACATTTGAAAACACTGAGCGTTTCATCCTTGCTTAGAGCTGA
TAAGACAGGTTTCGCTGAATATGTTTGTTAAATATTGACAGCGCTAAATG
GAACAACTCTCACACGGCTTTGATCCTTTGTCTGCACAATCACGGCCTTC
TCCCGTACAAATCAAAGATGGCCCTCATGGATAGGCTTGGACTACCTTGG
TTTGGCTCTTTCAAAGTTGGGCTTTTCACTTGCAGCCCGTGCGTGTTGAC
TCACACTTCCATTGTACCAGTACCGACTTTGACAAATATGTTTACGGCGT
GTTCCAAGTCCCTTCTTGCTTCAGCACTAACTAACCTTCATGATTTTTCG
TGTTTCCAATACATTGGTTTTAACACGCTTCATTTACTTCTGCTACAGCC
TCGCAGCCTCCAGCTCCTAGCGTCTCTAGCAACAACGGCAAGGTCGACAC
CGCCGTGTTTCCGCCCGACTTTCTTATCTCGAAATTTCAGACCCACAACA
TCTCGGACAGGAGTATCGATTCTGGACTTATCCCACGCCATCTCTTGGAT
GGCAGCGTGCCGCCGCCCGTAGGAAAGCGGGCCTCTAGCCTGGACTACTT
CCCCCCGTGCGAACGGCCCCAAACTGTCCCTGCCATCCGCATGGGCCATC
AGTTCAGGTGCACCAACTCCAACTTGTTAAATCAAAAAATTTTTCCTTGA
ATGAAGGGATGGTTTTCTCAACTTCTTTCAAAAGCAGTGCCGTAGTAAAA
CTTCGACGTTTAGAATTCACGTGGACGATTTTAAGGAGGCGCTCTCAGTG
GGTGGTTACGATTGGTTGCCACAGTTCTACGCCTACGCCGTGGGGGGTCA
TCCTCGTACACTGGATGACTAACGCTAGCACGTGGACTCGACGTTTTTTT
TGTCTTTCAACCAGATGTCTGGTAGACTTTAAGTGTTGTGGAAGCAGTAG
CCTGTGGTGTTTCCTTTGCAAAGGTCAGCAGTAACAGCCGTTCTCTATCG
ATTGTAATAATATTGCCGAACAGGCTTGAGCCCATTCACTGTGATTTACG
TACACTATTATTTTCTCCCCTGTCCCCTGTTTCCGGGCACGACTGGCCGT
CTCTCACGGCGAGCAGATTGCTCCGGGATACCTCCACCAAGCGCCTAGAC
ACGTACAAGAGAGGTGGCGTGCTTCGGGACGGACCTGTCCGGATCGTGAG
GTGCGCACGTGATACCTTTTTGTGCTCGTACGTCTTTGGGATTCCGACAA
GCCCACGTCATGAAAGGGTCACCCATCCCAAGACATCGACTAGCAGAGCC
TTTGTGCGAGTGCTGGCTGTGAAATGTACAGAAACAACCTCCGCCCGAAT
AATAGCCCTCGTTTTTGGGTTTTGAGGAATAGGCAAAAGAGGGTATGCTT
TTTGAGCCGGTTCCAGGTATCATACATCGGCTTTTTCAACCCTAAAGCAA
GGCACCAGTGTGTAGCCCCACGGACACGGAGTTTTTGAAGCACACTCACC
CCCCACTGCGTCATGCATGGGAATCGTGATAAATGGGGCGTAGAAAAAGT
CGACTTCAAGGTGCAACCCTTTCCGTTCACAATGTCAGGGGGCACACCCC
CTTCTCTGCAAAAAAGCTGTGCACCACCCCTCGCACTTTTTAATACAGTA
GGCGGGAGGTAGCTCGACGAGAGGGTTAAGTATGGTGTAGCAGTCTTCCT
TAGCCCTGTCATAGTCTTGAGTTTGGCAGTGTCCGTTGGTTCCTGTTCTC
CCTTGAGACTGGTGGGAGGTATCTACGGGAGACGCCGATGACGACGAAAA
ACAAGGTTACAGTACCGGTATCTGTTTCCTCAAAAACGTTTCGGCAAACG
TACCCCCTTTTTGCTCGTGGTGTAGAACATGGCACACACCAGCAGACCGC
GCTGTTTATTCACACCGCAGCAGCAGACCATGACACATATATTACATCAG
CAGACCATAGGCTTGCTTGCGGGATTCTGGCATTGGTCGAGAATAAGTAG
GCATTGAACAGGCGCACCTGCGAGATTCACACACACACATTATTTTCTAA
CAGGGAGTGAAGCCCTTCGAGAAGATCGTCGATCGCCGTACTTGGAAGTA
CTTTTTGGCGGCAGACTATATAGTCAGCGATGGAAAGTGGCGAATTTGTA
ATGATTTGATGCTGACAGTGGTCTGAGTGTCCCCCCGGGTTTACAGCCGA
ATGTTGATACCGCGAAAGCGATGCTCGGGCTCTCCAACTGTATCAAAAAC
GCAGAGTTCAGCCGTCGTCCGTCAAACCCACATTGCGGAATGTTCGCACA
CCCCATGCATGGCTGGAAAATTTCGTCCTGCATGTATTTTGTGTACCTGG
ACGAACCCAGACATTGGCTTTTGCGGTGCAAGCAATGTTTGTTTACGATG
ATTCATATCTATGATATGCCTTCTGATATCGAAAACCTTCAGTACTCTGT
TCGCACATGCACGGATACAAGCGTGAAATCTGAACTGGATAAATAAATGA
TGTACGTACTTTGATGAAGACCCGTGCCCATCGCTCATAGTTTTTACCTT
GTCTCTTGAAAATCACGCCGATTTTCCCAGCCGCTGACACTCCCGGCAAG
ACCACGAGGAGGCATGCAGACAGTGTTTCGCGCAAACGAGCTCTCTGTAG
GGTTCACTGCACAAAGAATGACAATATCAGACGGCTTGGTTGTTGGACAC
TGCTGTCCATTGGTGTGAGGCATCCGATGTAGTAACCCGTTCTACAAACA
GGGGCAGCTGTGAGCGTTTCAAGCAAGACAAGCAGTTCGCGTTGAACTTA
ATTGTCTCTCCGTTTGGTCGTGTGGTTCCGATGCAATCGTAACACTGCCG
GGAAGGGGCAATGCCATCACCGGCTTGCAAGAGTTCGCAGCTCAAAACGA
CATCAGCACATCCACTGGGTGCTGCTGCCGAGTCAGGCAACGTTTCTAAT
CACCGCAGTGTCTATCTGAAAGAACAAGACATCTCCGGTGGATCTAACTC
CCCCTCCCGCTATGTAAACCATTTCAGACGGTTCAACAAGCCTTGCATTC
AACCTCTTCCCCTCACGTCCCTGTTCCTGCCCCGTCTTTCCTTGGCTTGG
GTTTTACATACGCCCCGTGGCAGGCACACCTCTAAGGATAGGACGTACAT
GAAGAAGAGCTCGCACAGGAATCCCAGGAGCATCTCTCGCAATGTGCTAG
GCGGCTTCTGCACCTCCTAATTGTAGCCACGGCTATATCTTCTGCAACGT
GTAAAAAAAACGGCTACTTCGTCTGTCAAGAGGAAGCAGCTGCTGCCTGG
TCTGCACGGTACAAGCCTTCGCGTTCACATACAGGTTTCTAGCACAACTT
GCGTGTACGGGATATCCGAACCGGGGGTATAGTTGGTATATTCTTGACTG
ATGGGAGTGCTGGCCGACTTCTCCTCCACGCGAGGGCGTGGCATGATGAC
GGCTTGTTCAGGGTGAATTAGAGCGGCCGTGGTGAGATGCTACTGGTGTG
AAGGATTGCCTATGTGTGAGTTCTTGTTTGTGTGTCTTGCGCTTGTGTGC
TCATCCTCCAGTCCGTCGCGGAGTGGGGGTACGTGCGGTGGTTTTGAGAA
CTGATAACTTGGTTGTTTTTGCTGTGTGTGGCTGCTTGAGCTTGTGCTGG
GATGACGTCGTTGATGTGCGACACGGAGGGCGAGGTTAAGGAGTAGGAGC
GCAAGCACGGGGCAGCGTATTTTCAAAAAATTTTCGGCAGTGCTGACCGG
TGCTAGGAAACAAACCATGCCCATGAATCGCTTGTTTCGGATAATGGATT
GTGCCCGGGCAGGAAAGGGCTCTTATCTTGTCGATTGTTGGCAGGTGAAA
ATGCAATACTGTCTGTGTACGAGTATTGCAAAACAATACGTGGGGTGCAT
GCTGTTCGACGCTACGCTTTGTTGGTGTGCGGAGGCAGGTCGGTTCGGCG
ATACAAGGCAAGTCATGTGCTGGAGAAGGTACTGCCTTTGGGGTTTGAAA
CTTGCTGAAGCGGAAACGGCGTTGAGGGTGTGGTGAGGCAAGGACTGTCT
TGGGGCGTGGTGGCGCGGGGACTTGGGGGCGGGGGCGTGGGGGCGGGGGT
GCGGGGCTGTTGGAGGGTGGGTATGTCGCCGGTTGAAATCGAGTAAGTGT
TCCCGAGAACAAACGAGCACATGTACATTCGCTTGTATTGCACGAGAGCA
GGCATGGTAGGAACAATGTGGGGTTGGGGTGTGCGGTGAAGCTGAATGGT
GTACGTTGTTCAACAGGGGGAGGAAAATAACAGAGGAAATAGCAGTGTGA
AGGGGGGAGGGAGTGCATCAGGTATGCGTTGGACAGTTATATCTGCTGCT
GAACACAGCGGCGGAAGGCACCACGCATCGCAAGCGCAAACTTGCCCAGC
ACAAGTTCATTGTTTGGGCATGTGGTCTGAGCTGATCTATCTCTAGAACC
CCCTTCGTTTCAGGACAAATTCGCAGTCCACACACAGTAAAATAAAAAAA
CCTGTAAGAGCTGCTACTATCTATACATGGCTCACGAAAAAAAGAGGAAA
AGTTGTCAGGAGCTGAACATGTTTGACTTTATTCCTTTTACCCCCCTGTG
AAAAATCATGGAACATTTTGTTTTTAACAAAAGCTCTAAAAAAAAGCAAG
TGAACGCGTCGGCAAAAAAATGGCGACGCGTTCTCTTGCTTATAGAGTGC
GTTTGAGGATTAAGCGGTCAGCGAGGTAAAAGTTTAGCTATTGGGAGTCA
CGTGATATTCCAAGTGACCAATAACAAAATGGCGACCCAAAATGGAGACA
TTTGGCAACCTAGGGGTAAGAGTTAGTTGTTGCTTAATGGCATACCAGCA
GAACAACTTTTTTCTTCAGAAACATGCAAACTTGTTGGAGGGCGTGCAAA
CCCAGGTCATACCTGCACATAATTTGAGACCCGAATTACCGAATTACCAC
ACACATACGGGGTATGTGGCAACGAGTTTCGTTTTTCTAATTCCGCTTGC
GGTGGTGGTATACGAGCGGAGCGTTTGGTACTTCGAAGTGGTTGTTCACG
GTGGTGGTGGTAATGCTCTGCTTTATGCTGGGAAGCTCACGGATATTTAT
GCAGCCTGCTGTGAGGAATTTCTTCTACCTCATGATACTTCGGTACGAGC
ATTAG back to topCoding sequence (CDS) from alignment at P-littoralis_Contig118:409387..416291+ >mRNA_P-littoralis_Contig118.91.2 ID=mRNA_P-littoralis_Contig118.91.2|Name=mRNA_P-littoralis_Contig118.91.2|organism=Pylaiella littoralis U1_48|type=CDS|length=681bp|location=Sequence derived from alignment at P-littoralis_Contig118:409387..416291+ (Pylaiella littoralis U1_48) ATGTACGCCACAAGCCTCCCCCCACGCCCTAATCCTCACGCCCGAACCGC AGAGAACTACGCACCACGGTTCTCTCCGGACGAGCTTCCCCTGTTGCCAG CGAACTGGATTCCTTCTTGGAGGTCTCCTCCTTCCAAAATATGGGGAGAC GTTGGCGTCAAGCGTAGTGACAACGGGGCAACTGCTGCTGCTGCTTCTTA CGCCTCGGCCGCCACTTCCGCCGCCCGACCCCAGACGACGGGATCGATTT TATTTGTGAAGGACTCGGCTGCGAGAGAGATGTGGGGCTCGCTTCGCGAA AATTGCACCGGGCGACTCCACTCCGTACCGACCCACAACATCTCGGACAG GAGTATCGATTCTGGACTTATCCCACGCCATCTCTTGGATGGCAGCGTGC CGCCGCCCGTAGGAAAGCGGGCCTCTAGCCTGGACTACTTCCCCCCGTGC GAACGGCCCCAAACTGTCCCTGCCATCCGCATGGGCCATCAGTTCAGCAG ATTGCTCCGGGATACCTCCACCAAGCGCCTAGACACGTACAAGAGAGGTG GCGTGCTTCGGGACGGACCTGTCCGGATCGTGAGGCACACCTCTAAGGAT AGGACGTACATGAAGAAGAGCTCGCACAGGAATCCCAGGAGCATCTCTCG CAATGTGCTAGGCGGCTTCTGCACCTCCTAA back to top
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