mRNA_P-littoralis_Contig714.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig714.7.1
Unique NamemRNA_P-littoralis_Contig714.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig714.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig714contigP-littoralis_Contig714:91581..93675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2062
Hectar predicted targeting categoryother localisation
Exons3
Cds size1158
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791488.8836331-UTR-P-littoralis_Contig714:91580..921521680791488.8836331-UTR-P-littoralis_Contig714:91580..92152Pylaiella littoralis U1_48UTRP-littoralis_Contig714 91581..92152 -
1680791488.894788-UTR-P-littoralis_Contig714:92172..923941680791488.894788-UTR-P-littoralis_Contig714:92172..92394Pylaiella littoralis U1_48UTRP-littoralis_Contig714 92173..92394 -
1680791488.9342487-UTR-P-littoralis_Contig714:93565..936751680791488.9342487-UTR-P-littoralis_Contig714:93565..93675Pylaiella littoralis U1_48UTRP-littoralis_Contig714 93566..93675 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791488.908669-CDS-P-littoralis_Contig714:92394..925311680791488.908669-CDS-P-littoralis_Contig714:92394..92531Pylaiella littoralis U1_48CDSP-littoralis_Contig714 92395..92531 -
1680791488.920966-CDS-P-littoralis_Contig714:92544..935651680791488.920966-CDS-P-littoralis_Contig714:92544..93565Pylaiella littoralis U1_48CDSP-littoralis_Contig714 92545..93565 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig714.7.1prot_P-littoralis_Contig714.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig714 92395..93565 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig714.7.1

>prot_P-littoralis_Contig714.7.1 ID=prot_P-littoralis_Contig714.7.1|Name=mRNA_P-littoralis_Contig714.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=386bp
MDFCQYAGTLCSTPKASFRWNPFGVTAANHNRTDTPAAWASIPSSYGVST
VKFPWEIMSEGEVKCSRVQQSAPRSSRVHPLVDSCTGYTRVVTLRLDRVL
LQDELTRQCQENICSMSCAFDWQGNQRQMLVGDNPPYAANVKILLSPVET
EIFNRRITADLKRQIATSRTQLAEYRTMTANFQRQIAVLRQGASAMVTAA
TMMTGGDLFPAASVGIMAGGPASAAVLAGPISVAAATSGGRQHDEQSTGE
EKPSSLAIPRFGVDAVAMAFTAVVAVMVVAALPMEPVRSGLEIDIERSTC
ISNRGAAYPFDPGISPTLYDSGDEKDAVESGISSANSTDNTAVATTTATA
TGFTWMEYPHTPSTAGSSTRGLRGSGGLSWSGSPF*
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mRNA from alignment at P-littoralis_Contig714:91581..93675-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig714.7.1 ID=mRNA_P-littoralis_Contig714.7.1|Name=mRNA_P-littoralis_Contig714.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2095bp|location=Sequence derived from alignment at P-littoralis_Contig714:91581..93675- (Pylaiella littoralis U1_48)
CTGTGTCGTACTTAGACGGAAAGGGTGTAGCTAGAGTTGTGCTGTTCAGC
GGGCAACTCGGAGTGAGGAAAGGAGGGTGGTTGTCTTCTGTAGACGCGGG
GTCTCAGCGAATGGACTTTTGTCAATACGCTGGTACCCTCTGCAGTACCC
CGAAGGCTTCCTTCAGATGGAACCCCTTCGGTGTAACGGCCGCCAACCAT
AACAGGACTGATACACCAGCTGCTTGGGCGAGCATACCCAGCAGTTATGG
GGTATCCACGGTGAAATTCCCGTGGGAGATCATGTCGGAAGGCGAGGTCA
AGTGTTCACGGGTACAGCAGTCAGCACCCCGTTCATCGCGGGTACACCCT
CTTGTTGACAGCTGCACCGGTTACACACGCGTGGTTACCCTTCGATTGGA
CCGCGTGTTGCTTCAAGACGAGTTGACTCGTCAGTGCCAGGAAAACATCT
GCTCGATGAGTTGTGCTTTCGATTGGCAGGGGAACCAGCGCCAGATGCTC
GTCGGCGACAACCCACCGTACGCCGCGAACGTCAAAATACTGTTGTCTCC
CGTCGAGACCGAGATCTTCAACAGGAGGATAACAGCCGATCTGAAACGCC
AAATTGCAACATCCCGGACCCAACTTGCAGAATACCGGACGATGACCGCC
AATTTTCAACGCCAAATTGCAGTGTTACGGCAGGGAGCATCGGCGATGGT
CACTGCAGCGACAATGATGACCGGCGGTGATCTTTTCCCCGCAGCGTCGG
TGGGGATCATGGCCGGAGGGCCCGCGTCTGCAGCTGTTTTGGCGGGGCCT
ATCTCAGTAGCGGCAGCGACCAGCGGAGGGAGACAGCACGACGAGCAGTC
CACAGGGGAGGAAAAACCCTCATCGTTGGCAATCCCTAGATTCGGAGTGG
ACGCAGTAGCGATGGCGTTTACGGCGGTGGTTGCGGTGATGGTAGTAGCG
GCTCTGCCGATGGAGCCGGTGCGGTCGGGGCTGGAGATTGACATCGAACG
CTCAACCTGCATCAGCAACAGGGGCGCAGCTTACCCCTTCGACCCGGGAA
TATCACCCACACTATACGACAGTGGCGACGAGAAGGATGCGGTCGAGAGC
GGCATCAGCAGCGCCAACAGCACCGACAACAGCACCGACAACAGCAGCGG
TAGCGACGACGACAGCAACCGCGACGGGATTTACGTGGATGGAGTATCCA
CACACCCCTTCGACCGCGGGAAGCAGTACCCGTGGACTACGAGGATCGGG
GGGGCTGAGTTGGAGTGGCTCTCCCTTTTGACCGGGGGAGGAAGTAGTTT
TGCGCTTGCAGCATGGAGGGAGATGAGTTTCGTACTGTGGAGAGAGTGAG
CGGACGTCCAGCAGCGGTGACGGATACGTCAGCTAGGGCTTTTTACCCAA
CTCAGGCACGTTTGCGAGGATTTCATTTGCTTTTTCTTTTGCATGGTTCT
GGGCCGTGTTATTTGTGTTTTTCGTTTTGCATGCCGAAGTCTAAAAGAAA
TGTGGCTGTTTGAACCTTGGTATTTTTCTCGTAAACATGCGCATAACACG
TGGGAAACCTCGGGAAAGAATCCATAACCGCTCGTGAAATGCGTGAAATC
CCTGTGGGGCTGTTGTACGCACGACGACGGCGGCGTGTGCCGGAAAAACG
TCTTGTCTCAATCAAGGCGATTTCATTTTGCATTTTTTTTGTCATTCGTT
TCTGTATTCGATTTCGAGTTGACCGCATTAGTTTTGTGATATTGGTTGTG
GAAAAGTTGGTATCGCCAGAATTGCGTTGAAGTGGGGGGCGTTTTCGTCT
GCATACAATTGTTATGATGTTGTGGCTGCTGCCTGTTAAATCCCGGGGGG
GGGGAGATCAGTGATTCCATGATTTCACATGCAGCAGCACACACATGATT
TTATATGTTCTGGCAACCACCTCCCTGATGCGAACAAGTCCCATGACCGT
CAACCTTCCGGGAACAACACTCTTGCTTTGCTGTTTGCGCACGGACGGAA
GGAAGGCGATACATATTTTCTGATTTGCATGAGGAGTTCGGTTTTCGTTG
TTGGTTTATTCTTGAGCTATATTTGGTACTTTGAATGAACTTGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig714:91581..93675-

>mRNA_P-littoralis_Contig714.7.1 ID=mRNA_P-littoralis_Contig714.7.1|Name=mRNA_P-littoralis_Contig714.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1158bp|location=Sequence derived from alignment at P-littoralis_Contig714:91581..93675- (Pylaiella littoralis U1_48)
ATGGACTTTTGTCAATACGCTGGTACCCTCTGCAGTACCCCGAAGGCTTC
CTTCAGATGGAACCCCTTCGGTGTAACGGCCGCCAACCATAACAGGACTG
ATACACCAGCTGCTTGGGCGAGCATACCCAGCAGTTATGGGGTATCCACG
GTGAAATTCCCGTGGGAGATCATGTCGGAAGGCGAGGTCAAGTGTTCACG
GGTACAGCAGTCAGCACCCCGTTCATCGCGGGTACACCCTCTTGTTGACA
GCTGCACCGGTTACACACGCGTGGTTACCCTTCGATTGGACCGCGTGTTG
CTTCAAGACGAGTTGACTCGTCAGTGCCAGGAAAACATCTGCTCGATGAG
TTGTGCTTTCGATTGGCAGGGGAACCAGCGCCAGATGCTCGTCGGCGACA
ACCCACCGTACGCCGCGAACGTCAAAATACTGTTGTCTCCCGTCGAGACC
GAGATCTTCAACAGGAGGATAACAGCCGATCTGAAACGCCAAATTGCAAC
ATCCCGGACCCAACTTGCAGAATACCGGACGATGACCGCCAATTTTCAAC
GCCAAATTGCAGTGTTACGGCAGGGAGCATCGGCGATGGTCACTGCAGCG
ACAATGATGACCGGCGGTGATCTTTTCCCCGCAGCGTCGGTGGGGATCAT
GGCCGGAGGGCCCGCGTCTGCAGCTGTTTTGGCGGGGCCTATCTCAGTAG
CGGCAGCGACCAGCGGAGGGAGACAGCACGACGAGCAGTCCACAGGGGAG
GAAAAACCCTCATCGTTGGCAATCCCTAGATTCGGAGTGGACGCAGTAGC
GATGGCGTTTACGGCGGTGGTTGCGGTGATGGTAGTAGCGGCTCTGCCGA
TGGAGCCGGTGCGGTCGGGGCTGGAGATTGACATCGAACGCTCAACCTGC
ATCAGCAACAGGGGCGCAGCTTACCCCTTCGACCCGGGAATATCACCCAC
ACTATACGACAGTGGCGACGAGAAGGATGCGGTCGAGAGCGGCATCAGCA
GCGCCAACAGCACCGACAACACAGCGGTAGCGACGACGACAGCAACCGCG
ACGGGATTTACGTGGATGGAGTATCCACACACCCCTTCGACCGCGGGAAG
CAGTACCCGTGGACTACGAGGATCGGGGGGGCTGAGTTGGAGTGGCTCTC
CCTTTTGA
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