mRNA_P-littoralis_Contig713.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig713.27.1
Unique NamemRNA_P-littoralis_Contig713.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig713.27.1 vs. uniprot
Match: D7G4Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Z8_ECTSI)

HSP 1 Score: 262 bits (669), Expect = 3.320e-79
Identity = 128/133 (96.24%), Postives = 129/133 (96.99%), Query Frame = 3 
Query:  366 GRPHLTSDSSAPPETEQQPQVMNTLSKASPLKRKQQQASAPIVKPRALLTLGVEGWPCPDDKCTDGLLKVVKKKNGGDFLTCDQNNWKDETSCKVSLSLLKPSKDHPHECSLCLKDVGGTPSLGTDTGETDSR 764
            GRPHLT DSSAPPETEQQPQVMNTLSKASPLKRKQQQASAPIVKPRALLTLGVEGWPCPDD  TDGLLKVVKKKNGGDFLTCDQN WKDETSCKVSLSLLKPS+DHPHECSLCLKDVGGTPSLGTDTGETDSR
Sbjct:  603 GRPHLTPDSSAPPETEQQPQVMNTLSKASPLKRKQQQASAPIVKPRALLTLGVEGWPCPDDNSTDGLLKVVKKKNGGDFLTCDQNIWKDETSCKVSLSLLKPSQDHPHECSLCLKDVGGTPSLGTDTGETDSR 735
[Close]
BLAST of mRNA_P-littoralis_Contig713.27.1 vs. uniprot
Match: D8LU62_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU62_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 6.820e-22
Identity = 54/114 (47.37%), Postives = 71/114 (62.28%), Query Frame = 3 
Query:  429 MNTLSKASPLKRK-QQQASAPIVKPRALLTLGVE-----GWPCPD-DKCTDGLLKVVKKKNGGDFLTCDQNNWKDETSCKVSLSLLKPSKDHPHECSLCLKDVGGTPSLGTDTG 749
            M+ L   SPLKRK + +A+A           G        WPC   D C DG LK+V KK+GG F+ CD+N   D+T+C V+LSLL+ S  HP +CSLCL+DVGG+PS+G+ TG
Sbjct:   59 MDLLKTLSPLKRKIETEAAAXXXXXXXXXXSGSSEPGNPSWPCVGFDGCPDGRLKIVPKKDGGFFVVCDKNVHGDDTTCSVTLSLLRESTKHPKKCSLCLRDVGGSPSIGSKTG 172
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig713.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4Z8_ECTSI3.320e-7996.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU62_ECTSI6.820e-2247.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig713contigP-littoralis_Contig713:59841..60604 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G4Z8
PFAMsDimer_Tnp_hAT
Model size765
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.95e-69
EggNOG OGs2CZK4@1|root,2SARG@2759|Eukaryota
Cds size336
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791488.6912866-UTR-P-littoralis_Contig713:59840..602681680791488.6912866-UTR-P-littoralis_Contig713:59840..60268Pylaiella littoralis U1_48UTRP-littoralis_Contig713 59841..60268 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791488.7123733-CDS-P-littoralis_Contig713:60268..606041680791488.7123733-CDS-P-littoralis_Contig713:60268..60604Pylaiella littoralis U1_48CDSP-littoralis_Contig713 60269..60604 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig713.27.1prot_P-littoralis_Contig713.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig713 60269..60604 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig713.27.1

>prot_P-littoralis_Contig713.27.1 ID=prot_P-littoralis_Contig713.27.1|Name=mRNA_P-littoralis_Contig713.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=112bp
MNTLSKASPLKRKQQQASAPIVKPRALLTLGVEGWPCPDDKCTDGLLKVV
KKKNGGDFLTCDQNNWKDETSCKVSLSLLKPSKDHPHECSLCLKDVGGTP
SLGTDTGETDSR
back to top

mRNA from alignment at P-littoralis_Contig713:59841..60604+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig713.27.1 ID=mRNA_P-littoralis_Contig713.27.1|Name=mRNA_P-littoralis_Contig713.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=764bp|location=Sequence derived from alignment at P-littoralis_Contig713:59841..60604+ (Pylaiella littoralis U1_48)
TTTCTTCTGAAACTTAGAACGTGTGTGTGTCTGAGAATTTCTTCTGAAAC
CTAGCGGAGTTTTTGCTCCTACAACTGCAACATGGTAGATGTGTGTTCTC
GTGCACGGCAGGAACGTGTATTGTTATAGAACATTGCGTTTGATTGAGCA
ACTGATGGGAATTGGGTTTGATTGAATAACTGAACTGATGGCAATAATAG
CAAGGCGCGGCTGCGGTTTGTGCTTCAGCATGTATTTCGCGCTGTGGTTT
GTATTTCATTGGCATGTATTCCGAGATCATGGAACGAAAGTGAGAATTTC
TTCTGAAACGTAGAACGTCTCATTTTTTTGGGAATTTCAACAACACGACG
TGTACAGAGCACACAGGACGCCCACATCTCACCTCCGACAGCAGTGCACC
CCCAGAAACCGAACAGCAGCCTCAAGTCATGAACACCCTGTCCAAGGCCT
CCCCACTCAAGCGCAAGCAACAACAAGCCTCCGCGCCGATCGTGAAGCCG
CGCGCACTGTTGACGCTCGGCGTTGAGGGGTGGCCGTGTCCCGACGACAA
GTGCACCGACGGCCTTCTCAAGGTCGTCAAGAAAAAGAACGGAGGGGATT
TCTTGACTTGCGATCAGAATAACTGGAAGGACGAAACTTCGTGCAAGGTG
TCCCTTTCACTGCTCAAGCCCAGCAAGGACCACCCCCACGAGTGCAGTCT
GTGCCTGAAGGACGTCGGCGGGACACCATCGCTGGGAACGGACACCGGCG
AAACTGACAGCCGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig713:59841..60604+

>mRNA_P-littoralis_Contig713.27.1 ID=mRNA_P-littoralis_Contig713.27.1|Name=mRNA_P-littoralis_Contig713.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig713:59841..60604+ (Pylaiella littoralis U1_48)
ATGAACACCCTGTCCAAGGCCTCCCCACTCAAGCGCAAGCAACAACAAGC
CTCCGCGCCGATCGTGAAGCCGCGCGCACTGTTGACGCTCGGCGTTGAGG
GGTGGCCGTGTCCCGACGACAAGTGCACCGACGGCCTTCTCAAGGTCGTC
AAGAAAAAGAACGGAGGGGATTTCTTGACTTGCGATCAGAATAACTGGAA
GGACGAAACTTCGTGCAAGGTGTCCCTTTCACTGCTCAAGCCCAGCAAGG
ACCACCCCCACGAGTGCAGTCTGTGCCTGAAGGACGTCGGCGGGACACCA
TCGCTGGGAACGGACACCGGCGAAACTGACAGCCGG
back to top