mRNA_P-littoralis_Contig713.2.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig713.2.3
Unique NamemRNA_P-littoralis_Contig713.2.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig713.2.3 vs. uniprot
Match: A0A6H5JPW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPW3_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.650e-29
Identity = 62/91 (68.13%), Postives = 73/91 (80.22%), Query Frame = 3
Query:  138 KVRRQHLESLFIVYQAKILHALDRDRWTKLLCTTISSLLSVIPLQSLTKRARLGVVMCIVGSGRTHLFSPTVLAVLACDWFEDWASFKLIQ 410
            ++RRQ LE LF V+QAK+LH LDR RWT +L TT++SLLS  PLQ LTK  RL V+MCIVGSGR  LFSP VLAVLACDW +D+ SFKL+Q
Sbjct:   71 QMRRQELEELFTVWQAKLLHPLDRSRWTNVLNTTVASLLSAQPLQCLTKSGRLAVMMCIVGSGRAGLFSPAVLAVLACDWVDDYGSFKLLQ 161          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig713.2.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JPW3_9PHAE1.650e-2968.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig713contigP-littoralis_Contig713:804..12775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2788
Hectar predicted targeting categoryother localisation
Exons11
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-02_001550.1
Cds size2526
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig713.2.3prot_P-littoralis_Contig713.2.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig713 1010..12719 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791488.0300202-UTR-P-littoralis_Contig713:803..10091680791488.0300202-UTR-P-littoralis_Contig713:803..1009Pylaiella littoralis U1_48UTRP-littoralis_Contig713 804..1009 -
1680791488.1818256-UTR-P-littoralis_Contig713:12719..127751680791488.1818256-UTR-P-littoralis_Contig713:12719..12775Pylaiella littoralis U1_48UTRP-littoralis_Contig713 12720..12775 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791488.0494032-CDS-P-littoralis_Contig713:1009..12491680791488.0494032-CDS-P-littoralis_Contig713:1009..1249Pylaiella littoralis U1_48CDSP-littoralis_Contig713 1010..1249 -
1680791488.0607574-CDS-P-littoralis_Contig713:1625..25461680791488.0607574-CDS-P-littoralis_Contig713:1625..2546Pylaiella littoralis U1_48CDSP-littoralis_Contig713 1626..2546 -
1680791488.0739346-CDS-P-littoralis_Contig713:2832..30931680791488.0739346-CDS-P-littoralis_Contig713:2832..3093Pylaiella littoralis U1_48CDSP-littoralis_Contig713 2833..3093 -
1680791488.0842483-CDS-P-littoralis_Contig713:3367..34661680791488.0842483-CDS-P-littoralis_Contig713:3367..3466Pylaiella littoralis U1_48CDSP-littoralis_Contig713 3368..3466 -
1680791488.0959158-CDS-P-littoralis_Contig713:3669..37801680791488.0959158-CDS-P-littoralis_Contig713:3669..3780Pylaiella littoralis U1_48CDSP-littoralis_Contig713 3670..3780 -
1680791488.1096702-CDS-P-littoralis_Contig713:3864..41261680791488.1096702-CDS-P-littoralis_Contig713:3864..4126Pylaiella littoralis U1_48CDSP-littoralis_Contig713 3865..4126 -
1680791488.1252425-CDS-P-littoralis_Contig713:4405..45191680791488.1252425-CDS-P-littoralis_Contig713:4405..4519Pylaiella littoralis U1_48CDSP-littoralis_Contig713 4406..4519 -
1680791488.1382446-CDS-P-littoralis_Contig713:5107..52711680791488.1382446-CDS-P-littoralis_Contig713:5107..5271Pylaiella littoralis U1_48CDSP-littoralis_Contig713 5108..5271 -
1680791488.1484103-CDS-P-littoralis_Contig713:5810..59361680791488.1484103-CDS-P-littoralis_Contig713:5810..5936Pylaiella littoralis U1_48CDSP-littoralis_Contig713 5811..5936 -
1680791488.1587546-CDS-P-littoralis_Contig713:6177..63211680791488.1587546-CDS-P-littoralis_Contig713:6177..6321Pylaiella littoralis U1_48CDSP-littoralis_Contig713 6178..6321 -
1680791488.171016-CDS-P-littoralis_Contig713:12635..127191680791488.171016-CDS-P-littoralis_Contig713:12635..12719Pylaiella littoralis U1_48CDSP-littoralis_Contig713 12636..12719 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig713.2.3

>prot_P-littoralis_Contig713.2.3 ID=prot_P-littoralis_Contig713.2.3|Name=mRNA_P-littoralis_Contig713.2.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=842bp
MEGARGHVQPAGSGGFPRLTNAGVAKTKVRRQHLESLFIVYQAKILHALD
RDRWTKLLCTTISSLLSVIPLQSLTKRARLGVVMCIVGSGRTHLFSPTVL
AVLACDWFEDWASFKLIQDTVRQASLSRLRSECGSTGLPSEWSRKKMASF
LEEGVENTIVGSWRALGLTGAARERVEKTGRELRGVAARCLGASDRPSAR
KLLICFLDSNRIEGFIQALISWGQEQLRASKSTIFDEAFPFLETRQLQAS
RLRADQRAAGDLGNDVGTESDGHLATKGTGESTNTPWSSSPAACMTNPAD
TQAENSRWGEGKEASIDGSRKRRKLGPLRMDERVFKGVAGGATSMWRRGA
IEDCRGDGTYNIRYDDGEVEPLVRRADIFEVQGSDLPQETLTPPEVSRRR
FDIHDISARRSHIKTKRTLSRGSVGDVSPLSASPKSSPVCDEHASESASR
TIQDENEFWFAADADDIGDVQLVAPGSLRRLTERGHQKRRVIQDECDQPV
SSSHEDDGPSCDAAARDCPVSLVANQELENTQLLLWTEQDISEEVADSQV
GHRAEGGKDSLQDKEGFCRGLNQREADLAADCNGRCVCNNEERGSCGVGR
EEDEVETDEELSEETRGKAREEKGEAGIGQEVETRTGNGKGGPEESLEEE
GKGESEDPHDEGKDADNRADDIGPFASAMPSTPPVNQTLIPEKQGEMRSK
KGQLRGPNRERKISEYQQNDIYSGKAVSSSVTVQQPILSGADGGQAEVDT
PTPILRVPPTIQDMSMELVAQLDDPRSNHCQQQNDAGRRDETRNASLVDD
NMVDTQTPSRPTHHMRVYGSTGFTRVRQSLGAWFSQRKDIL*
back to top

mRNA from alignment at P-littoralis_Contig713:804..12775-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig713.2.3 ID=mRNA_P-littoralis_Contig713.2.3|Name=mRNA_P-littoralis_Contig713.2.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=11972bp|location=Sequence derived from alignment at P-littoralis_Contig713:804..12775- (Pylaiella littoralis U1_48)
CAGCAGTCCAGTCGGACGGAATTCTTGTACATCTATTACTATCCTGTACT CGCTACATGGAGGGGGCTAGAGGCCACGTACAACCAGCGGGAAGTGGTGG TTTCCCTCGGCTGACCAATGCAGGGGTGGCGAAGACGAAGGTGACAACAT AAGATACGAGTGAAATCACAAAGTTCGACTTGAGTTCTAAGTTTCGTATT TGATATGAATACTTCGCACATACTCCGTACTAAAATTACGATCTCGGTGG CGGAACTACCAGTCAGTGCCATCAATCTGATGTTTGGGGTTCCGTTGCTC GTCAAATGGTGCTGGTGGAGATGCCATCCGGCCCATCCCGCTTTGATTTG GTTTTATCCTTGCCGGGTGGATCGACTCACTGCAGCAGGGCTCTACATAT CATCAATCTCCGAACTCACCTCATGAACAAAGTCAAATTAAATTTTTAAA GTTCAAACTTGTAAGGCTACATCTTAGTCCATGTTTCAAAAACGTCATTA TTCCTTTTGGGCCGTTCGAATAATAACGTTTCTAACAGGCTCTGTTGAAG GACCCGATATTATGTTGTTGTTGTTGTTGATTCTCACATTAGCTCACTAC CGCCGCAGTCTAGCCCGTGGTCACAAACCAGGCACATATCGTGCTAGGAG GAAAAAAATAAAAAAATATATATATATGGACTATGATCACCCACAGTCAG ATCAGATATGGTACCGTTGGGGTACCATCTGTGGTGGCCAGAATACCAAA CAAATACAGAAAAAATAACAGGCTCGAAAGAAACACACACATTGGAAACA GTCCGACAAAAAAAAAAAAAAAATCAAGACAAACCTCATCAACCATAACC ATATACTTCGAAGTACTTCGTACATCGAACCAGGGCCCAGGGCCATGACA GACCAAGGCAAAGGCAAACCAGGGCGATGGTCCAGTAACTACATGATCAA CAGACGAAAGACAAAAAATAGAATAAAAAAGGAGAAGATACAGGGAGGGC ACAAAGACTGAGGGAGTGCATTCATAGACAAACACAACAAACAGGGCCAA ACAAAGAGGAAGCAGGGGAACGAAAAGGGAAAAGAAGATCGGAAGTACCG GAAGTCGGGGGGGGGGGGAAGGGGGAGGGGGAGGTGATAAAAATAAAATA AAAGGCCTGCAATCAATCGCAAACGTGTCTTGCCACGAGGTCTGCCTGTC CACGCTTGCTCTCCTCAGTCGCACTCATGCCTCCTGCTACTGGCACCACC GTACCCAGTTGTTTCTGCCCCACATCTTTGGCAGCAGCTACACCACCACT CCGCCCTACAGGTTTTCCACTCCGGCCACCCCGTAGCTTGGCATTGGACT GCTTCTTCTTGTGCTGTGCAACTTCAACCCCACTACCCCGCTGCCCTTGT GCCCCCCCGTACTCCTCCTCTCGTTTATCCCCGCCATCCGTTCTCCCTCT TCTAGTCAAGGCCTGCCTCTCAGCCGCGTCCCTCTCCCTTTTCCGTCGAC GTGTCTCTGATAGGTCTCCCCCTTTCTTGAGCCACTCGTCCGTGGACCGC CGCGCACCCTCGTCGATCCTGTCGTACCACTCGTCAGCTCTCTTGGCACT TGCCTCCCACTCCTCATTTTTGTCGACCACGATGTCGAACGCTTCGAGGT CCTCCTGCATTCGCCTCAGCCAGTCAAACTCTTGCCCCCCCCAGATACCT CGCTCCCCCCTGCAATTCTCCCAAAAGAGCAGTTTTCGGGAGTCTCTCGT CTCTCATGCGCGCAACGAATCCTGCGAAGCACAGTCGCCGCTTGCGCACG GTGGCCTCAACGCTCTCGTTACAACCCGCGGTGATCAGGGCTTTGGCGTA GGAGAGGGGTCGGTCTGTTCTCTCCCTCTTTTTCCATCCGATGCAGCGAA GGAGGAAGAAGTGGTGGGCTGACCGAAGCTTGCGGTACTCCGCTGGCTTC AGATTCCATGTGACACACCCGTAGAGTAGGGTCTCAACGACTTCAGCTTG AAGGAGTCGTACTTTTAGTCGAAGAGGGGCCCCCGGGCGGTCGTACATTG CCTGGCTGTTGCGCCGAAAGCAGGCGTGCGCTCGCTGCACTCGGTGGTTA ATCTCGCCCTCAATGCTACCGTCCTCACAAATTTTACCCCCGAGATAAAC AAAGTCTTTCTTCTGCTTGAAGACCATCCCGGCAGCGTCGATCGTGAACG AGCACGCCTCCATCCCTTTCGCGAGCATACACATGGTCTCCGTCTTGGGT TCTGACACCAACAGCCCAAACCGCCCGGTCACACGTACGATGATCGACAT CATCTTCTCAAGGCTCCCAGGTGATTGAGATACAATACAGGCGTCGTCGG CGTAGAGCATACTCCAGATGGACTTCACAGCCTCCACCAGTCGGGCGTTC CTCCCCTTCCCCTTCGTCACCTTCCTCTTGACCTTGGCCATGTCCGCCAT CACCTCCGCGTCCTTGCTGATCTCGGCAAAGGCCACCATGAGCATCGCAG CAAAGAAAAGGTTGAACAGCAGGGGTGCCAGATTGCATCCCTTTCGGAGT CCCTGCCCCACATCAAACCAGTCGGAGCACCTCCCGTCGTCCATCCGTAC GCATGCTCTCATTCCGTCGTGGAATTGGCGAATGACTGCAAGCATCTTGG GGGGCACTCCGAGCCGCTTGAGCACCGACCACAGTAGTTCCCGGTCTACG GAGTCGTAGGCTTTCGTGAGGTCGATGAAGCAGGCGTATAGTGGGGTTGA CTTCTTCCGTGCAAGCTCGTGTAGGCGTCGAACCACGAACATCATGTCAA CCGTTGATCGGTTTGGTCGGAAACCGCTCTGTTCCTCCGGCAGGATGCCC TCTCTTTCGCAGTAATCGCTTAGCCGGGTGGCGACCAGCTTCAAGAGTAT CTTGCCAGCGTGGGCCATAAGGGAGATGCCTCGGTAATTGCCGCATTCCG TCTTGTCCTTCTTCTTGTGCAGCACCTTGATCGAAGCATCTTTCCACTGC TGTGGCACCCTTCCCGATTGCCAGATGTTGATGATGATACTGTAGAACTG CCGTAGGAGGGCTTGGTCTCCGTCAAGGAAGAGCTTGATAAGCTCCGCCG GTAGCTCGTCCGGGCCCACAGCTTTCCTGTTGGCCATTCCCCGGATTGCT TCCTCAACCTCAAACAGCGAAGGGACGTCATCAAGCGGTACGCACTGGGG CCAGGGCTCGATCTTGTCCACCACTCTCGGATCCAGGGTCGGTGACTTGG TGTTGAGCAGAGCATGGAACCACCTGGCCCACCGCTCGAGGATAAGTGCG GGGTCCCGAAGAAGATTTCCATCCTCGTCCTTGATGTTCTGTGAGGTGAA GGCCCTCTTCCCCTCCACATCCAATCCCTTCATATGCTTGTAGAAACCGG CCTGGTCCCCTTCGCGGCTTTTCTTCTCGAGCTGACTCACAAATCCATCG AAGAACTCATTCACAGCACTGGCTCTAAGTCGATCAAGGTGCTTCCCGGC CGCCTTGAGGTTGCTCCTGAGGGTGGAATATTTCGGCGCACCGCGGAGCT GCTTCCGCGCGTCCTCCCTTTGAAGCCATGCCACGTGGATCTCCTGCTGC ACTTCCTCACTGGCGCACCAGCCACTTGGCAATCTCTTGCCCTTGGCCCG GGGGGCAACGTCAGCGGCGGTGGACATCACAGCAGTCGTCAAGGCCGACG CGAGCTCATCCAGATTCGCACCTTCCATGATGGGGGAAATTCTGTCTCTA AAGTCTTTCCGAAGTTGGGGGTCCGCCATCAACCGTTGTAGATCGATGCT AGCGGAGGTACTGCTGCTGCTACCGCTCACACGTCGATTCGGTGCCACTC GGCCAAGCAAGCGGATGTTGGCAAGGACGAGGTTGTGGTCGGAATCCTTA CGATCGATGCGCCGTACGGAGACGTTGCGCACCAACCGAAGGTCTGCCTG GCGGGTCAGGATGTAATCGAGTCGATATTCTCCCTTCCCGCGGTTGGAGC TTTTGAAAGAGTGTGATATCCCGCGTTTGGGTGTGCAGAAAAAGGTGTCC AGGACGGAAAGCCTACAGCTTGCTGCAAATTCCACCAGTCTCCGCCCGTT ATCGTTCCGTTTGTCACGCCCGTACATGCCCATCACCTTATCAGGGGTAC TCTCATCCTCTCTTCTACCAGTTCGAGCGTTCGCATCCATCATAACCACG ACGTGTTCCCTGCTAGGTACTGCATTGACTGTCTCTTGTGTCAAAACCGA ACAGCAAGTGGTTTTATTTTTTTAATAACTTCCGAAAAAAAGTCTCTCCT GTTCTGATGGGGCGGTTTGATCGTAGCCAACTCGAGTCTCATTTGTTTGC ACTGCTGTTACCGGTTCGCTCTTTCGTCCACCACTCTCGAACGAATGAAG CCACAGTAATGGTAAGGACATGCCTCGCGAGCTGGGTGTATGGTCCTTCT TCTCCAATAGTTATATAACACCGCGAGGTATCGATAGACTGGCGAAAAAA GGTTGCAGGTATCACCGATGACGTGTGAAGAAACGAAAAAAAATCGACGC AGCTGACCACCAGCAGCAGCAGGTGGTGGTGATTTCTTCTTTTCCACTAG CCATCAATTCCTGCAATCCTTGTACGCCAGCCTATCGATGCCTCGCTGCT TCAGAGGACCACCGGAGGAGAGAGACCATGTTCACAGCTCGCGAGGCATG GCTTTGTCATTGCTGTGGCTTCATTCGTTCGAGAGCAATCAACAAAAAAT CAAACTGGTGTGGCGGCAAAAAAAACTGCTGCTGGTTGAAGAGTTCAGAG GACAGCAGCAGCACAGCCAGCTGCCAGCTCTCGTCCAATCCATTTTGGTT TTTGGTGCATCGCTCTCGAACGAAAGAACCCACAGCAATACTAAAGCCAT CGGCCGTGAGGTGTATGTATGGTCCTTCTCCTGCGTCGGTCATCAGAGGC CGCGAGGAATCGATGGGCTACCAAAACAAAGGTTTCATGTCATGTCATCA TGCAAGGCTGACTGTAACTTGGGTTGTTCAAACTCCTTGACCAAAAAAAA TAACAGGTTTCCGATAGCTGCAGGCTATCGGAAAAAAGACTTTTTCTGAT CGTTTGGGGCTATCGGAAAAATTTATTCGAAAAGTCGCTGTCTAAAATGG CTGTTTCTGATCACATAAGATGCTCCGTTTTGGTCCAATGTTCAAAACAG CCAAATAAAATAAAAATATATGAACGGTTCTGACACATAAGATGTACCTT AAACATGAATAGCATCGCGCAAACGCACCCGCAGATCTCCCAATTTGGCA TAATTTCGTAATTTCGGACTGCTGTAGGCACCCAGATACAGTTCTCACGG ATACCTTCAGAAGGGTTTCTGGCTGCCTGCTGCTGCTGCCAAGGCATGGG ACGCCACTCACACATCACACCAGTAGACTGTGGCAATTTCAAGCTGTGTG GTTACTTGTGGCGAGTTTGCTTTGTCCGTATCTGAAGCACAGTTCCTGTG GTGTTTGGCGCAAAAATCCATGCGGCATGATGGTGCTCAAAATGTTAAAT CTGAGCACCTCGATCTCGCGCTACAAGGCATTTTCAAGGGTCGCGCACAG TTTTGATCCACACAGGAGTTGAAACTGCCGTGAGACATCGAAAAACTTAC TGTATACCGTAGATGTTTGTGCCTCCCAAGGCTGAATGGGAGAGGGTGGA TAGGGAGTGTACAGCAGTGAGGGGGGGGGCACCAGCCAGGATTTTTTATT TAGAAGTTTGAAACGTTGAGAAAAAAAATTACGGTGGAGCCAAAAATACT ACCACGGGGCCCACGGGGAACATGCCCGGCGTCCCCACAAGTCTTGCCTT AACACGTGTCGCGTACTGCAGAGCAGATGACCCTCTTTCTTTTTCGCACA ACTACTGCTGAAGGCGTATTATACCGGTACTCTCTCATGTTTCCGGAGGG AAAGTAATGATTTCCTTCTGAGAGACAGTCGTCAGCTCAAGAAAATTGGA TGGTGCAGACGTTCAAGTCCCCCAGGAGTACATATGATATGATAGCCGGG AGTTAATTCGCCAGCTGACAACATATGTCCTTTTCGTTGCTCAGCGGTAG AGGAGATACCTCGTACGCGTACTTGTATTTTAAACCTGCCATCAACGCAC AGACAAATAGTATGTTGGTGCCGCTCCTCCGAGAAAAAAATCAGTAGCTC GGCACGGCCAAACAAACGGGGTTATGAGAGCGATTCTTTCGGTCAGTGTA CCCCAGCACATGCTGTTGGGCAGATATTGGAGGGCATGCATTGGCATGGT TATCCAATATTCATACTTTGCGCGGCCACAGCCGACCCCACTGCAGGATC TGTCCCAGGATCCAAAACATCCCCCGCCACCCTTGCATTCTTCGTCGACG AACAACCTGAACCAATGACGCAACCAATTCACGTGAATGTTTTCAAACCC GCAGGTGCGAAGGCAGCATCTGGAGAGCCTTTTCATCGTCTATCAAGCAA AAATCCTGCACGCTCTTGACAGAGATCGGTGGACAAAGCTCCTCTGTACC ACGATTTCGAGTCTCCTCTCAGTTATCCCCCTTCAATCTCTGACGAAGGT ACATCGCAATCATTGAAGCAGCACACACCTACAGGAGGCCAGCTTTGTTT CTTGCTGTCATGGAGCAAGAGGACTAAATGGTGCTGGGAGCGGTTATGTG CCCGCTGTAGGCATGAAAGCTGTGTTGCATTCGGCAAACGTTTCTTGATT CTCTGTTAGCCCACGAGCACATGTACGACACATCATCAGCTGGACTGACG CTCTCCGCCTCCACGTTTTTCTTGCCAAAAACCGTCAAGAGAGCTCGTCT GGGCGTTGTGATGTGCATCGTCGGGAGTGGAAGGACCCATCTGTTTTCGC CAACTGTTCTGGCAGTTCTGGCCTGTGACTGGTTCGAAGATTGGGCGTCT TTCAAGCTGATACAGGTAGGTGCAGACTTGAAGCGGAGTCGGGGGGTATC GGGCGACTGCCTACTTTCAACAGGTTGCTGACAAACGGTTGTTTGTGAAA AGGCAGCGTAGGCCGGGGCGATGGTGTACGGACGCTGCTTCCATCGCATT TGACAGTAGCCTTCGAAGAGCAAGCAGTTTTCGAGTTGATGAGGAATCGA TGTGTACTGCATGTGTGGAGAGGTCGGCAGTGGACCCATGGGTTCTGGCA TCTTCCGGGCACCAGTATTTTTTCGCGAGATGACACCACCGCACCTCGCC GATAACTTTCAGAAGCCGTCATACAAGCAAGGGACTTTCGGGCGAAAGTC ATGTATAGCTATACAGTTGGCCAGCCGTGCTTTGCTGCTGGTATTTTGTT GACGGCCACGACGTACGTTGGCGACCATCGGTTGAAATACTTACTGTAGT CTAGCGGTTTCGCTGACCAAGCACAGTCAACAGCAGGCTCTCTACATTTC TGTAGTTAGCCCACGAGCATACACTGTGAACGCCCCCTTTTGACTTGTGC GCAGGATACGGTCCGCCAGGCATCTCTGTCTCGCCTCCGGTCCGAATGTG GTTCAACTGGCCTACCGTCTGAATGGTCACGGAAAAAAATGGCCAGTTTT CTTGAGGAGGGTGTGGAAAACACTATCGTCGGCTCTTGGAGGGCTCTCGG CCTCACGGGGGCAGCCAGGTTTTACCAATCCCCCGAATATGTTCCCTGAG CTCAGTATATCCATTATTTCGCGGACTCCGTATTGTATATTGTTACAAAG CAGAGGCGAAATCCACACCAGAAGGGTTCTAGCCAATCGCCACCACGAGT GGTAGCAGGAATCGTGTCGCTCGTCGCGACTGACCCAAATTTATTCTCAA GTTTCGTGAGGAAAGACATAGTGCACCGCATTAACTGTGTGTTGTGTGTT GTCATCCCATATTCTCTGGCACACTAGTCTGCACCCTGCGGTTCAAACTA CAGGCTAGGCCCACCTACGGGGTCACACAGGAGGAAGGTCAACACAGGAG GAGTTACCCCCACCTTCCTTCTGCGGTACATGCGTGATATTTTTTCTCGC GAGCAGGGATCCGCGGTCCCTACCCTCGTCGGCGAAGCCGAATATGCTTT TACTAACAGCTGTGATGTTTAGCATCGTGAGGCGACAACGTGCTTGATAA TAAACTTGTGTGAGCTGACGACATTCAGTGTCGTTCGCAGAATCGTCGCG GTAAAATTACCGTTTTTCGTACGCCTGTCTTGCCTCGGCACGTATGGGTT GTGAAGGGAGCGCGTGGAGAAGACCGGAAGAGAGCTGCGTGGGGTGGCAG CTCGGTGCTTAGGAGCTAGCGATCGGCCCTCAGCCAGGAAGCTGTTGATC TGCTTTTTGGATTCCAACAGGTACTATGGCGCCCCACTGCTACTATGTTG TACGAAGTATTACGATCCCTGAAGCAGTTGAAATCGACCCTCTGGGAGTG GGTTGCTGGTGTTGGAGTTCCAGCCGCAGACCTATCTGGACTCTGGCTAA GAATAAAAGGGATGCAGTTTAAGTTCAGGTGATGAGATGAAGTTTAGGCG TTGGTATGGAGTGTCAAGCTGCAGACCACAAACCCGGAATCCATGGCCCG CTACCAGGTGTCTTGATGCCATCTCTGATTTCCTGCTTTCGGCACGTAGA ATTGAAGGTTTCATTCAAGCGCTGATCTCATGGGGCCAAGAACAACTCAG AGCATCCAAATCCACAATCTTCGACGAGGCCTTTCCTTTCCTCGAGACGA GGCAGCTTCAGGCCTCCAGGCTGCGCGCCGACCAACGCGCAGCCGGTGAT CTGGGGAACGACGTTGGAACTGAATCCGATGGACATCTGGCAACAAAGGG AACAGGGGAGTCCACTAACACCCCATGGTCGTCATCACCAGCCGCGTGTA TGACTAACCCTGTCCCTCATTTTACGGGCGAGGAAAATCCTTCTGCTCTG GGCTCAGGGGAGCGTTGTCGTACCGGAGCCAGTCGCGGCCACCAGGCCGA TACGCAGGCCGAAAATAGCCGGTGGGGGGAAGGAAAGGAGGCGTCGATCG ATGGGAGCAGGAAGCGAAGGAAGCTCGGGCCCTTACGCATGGACGAGCGG GTGTTCGTGAAAAAGGCGAGCAAAGCGTATTTTATTTGTGCGTGAGATGT GAGGGGCACCTGAATGCGCAATGAGCTCAGCTGTTGTCTCACGACAGTTG CTGTATCAGTGCTTGGCTCGGAATAAGTTTCTCGCCCAAAAAGACGATTT TCTGCACGTGTTGAGTGATTTGACGACAGCCCCCATCCTGTATTTCCTGA TGGGCACAGAAGGGCGTTGCTGGGGGGGCAACCAGCATGTGGCGGCGTGG GGCTATCGAGGACTGTAGGGGCGATGGCACTTACAATATCAGATACGACG ATGGCGAGGTATGGGTGGTGTCGAGTTCGGCACGTTTAATCTGCCGTCCG TTCTGTGCTTGTTGACTTGTGTAGACAAAATGATGCAGCATCGTATGCCC TTTTGGCGTTTGGACCACCTGGATTCGAAAAAAAAAGAGTCCAGGATTCT GGCGAAAACGATGATCGCGTAGTTTTGTCCTTCCGACATTGCTTTTTCGG GCCGTGTCGTCGGTAGTGCTTTCTTTGGTGTGCGTGTTCGCCAGTACGCA CAAAACGATCAATGTTTGCGAACCATTTTCAGGTTGAGCCCCTGGTGCGG AGGGCTGACATTTTTGAGGTCCAAGGTAGTGACTTGCCCCAGGAAACGCT GACGCCACCAGAGGTCAGTCGCCGACGCTTTGATATCCACGACATCAGTG CGCGACGTTCTCACATCAAGACGAAGCGCACGTTGTCCCGGGGGTCAGTG GGCGACGTTTCTCCTCTGTCTGCATCTCCAAAGTCTAGCCCAGTGTGCGA TGAACATGCGTCCGAATCTGCATCACGAACAATACAGGACGAGGTAAGCG TGGAGTTCAAAGAGGTTGGTCTTGTTACTTTGGATCGAAGACTGCAATTT CAGGCCATCTCCTAATGCCCTGAACGAACGTTGGGCGCACAGTAGTATGT GCCCATACTTGGTGGATGACCCATCCCGCTCCCTTCCACTTTAGCGCTGT GCAGTGCTTTGGAACTCAAGTAATACCCATTGCACACAGAGTTGTGCCGG GTTGTTCGGGTTGTTCACCCCGTTCACTTTCTGTTATATTGTGTTTTACC GACGCAAACCCCACCCGCTGTGATCACAGAACGAATTCTGGTTCGCTGCT GATGCCGATGATATTGGGGACGTGCAACTGGTTGCGCCCGGCAGTCTCAG ACGATTGACTGAGCGGGGCCACCAAAAACGCAGAGTGATCCAGGATGAGT GCGACCAGCCGGTGTCTTCTTCACACGAAGATGACGGCCCTTCGTGCGAT GCAGCTGCCCGAGATTGTCCAGTGAGCCTAGTCGCTAATCAAGAGTTGGA GAATACTCAACTGTTGTTGTGGACTGAGCAAGACATTTCAGAGGAAGTGG CCGACAGCCAGGTGGGGCATCGAGCAGAGGGGGGTAAGGATAGCCTCCAG GACAAGGAAGGTTTTTGCCGCGGTCTTAACCAACGAGAAGCAGATTTGGC AGCGGACTGCAACGGAAGATGTGTCTGCAATAATGAGGAGCGTGGCTCAT GTGGGGTGGGCAGGGAAGAAGACGAAGTGGAGACGGACGAGGAGCTGTCT GAGGAAACGCGTGGAAAAGCGCGGGAAGAAAAGGGAGAGGCGGGGATTGG TCAGGAGGTAGAGACGAGGACGGGTAACGGAAAGGGAGGTCCAGAAGAGT CATTAGAAGAGGAAGGGAAAGGCGAGAGCGAGGATCCTCACGACGAAGGG AAGGACGCCGACAACCGTGCAGATGATATAGGTCCCTTCGCTAGTGCGAT GCCTTCAACGCCGCCAGTCAACCAGACTTTGATACCGGAAAAACAAGGCG AGATGCGGAGCAAGAAAGGTCAACTACGTGGACCGAACAGGGAAAGGAAG ATCTCGGAATACCAGCAAAACGACATATACAGCGGTAAGGCGGTGTCTTC ATCTGTGACGGTGCAACAGCCTATCCTCTCAGGTGCCGATGGGGGGCAGG CTGAAGTCGATACCCCCACCCCGATTCTTCGTGTGCCGCCGACGATTCAG GTACGCGGGATCACTCACTTGAAAGCAACTGATGAGTGTTACCTTGTGCG TTTTTTGTACAACGGTTGTAGCTCTGTTCTCATTGCGCATATCAGCAGCT GAATTCAACACCATACAACTGGTAACTCGTTGCCTAAGAGGTAGACTGGT TGAGCGAGCTGATACACGTGGAAAGTTGGCAAATGCAGGTTGTCCTGGGT TTTCAGCCATTCATATTTGTGTTGAAAAAGCTCCACGAAACAAATATTTG AGAAAGCTTTTCGGGCCGAACGGCGCCACGAATGAAAGCTGTATGCACAG CAGTGATGTATCCTGTCATGGCCTTTGCACTGAGCATCTCCCTCACTTCG TCCGCCTTCAACGACCTTCAACATAGGACATGAGCATGGAGCTTGTCGCC CAATTGGACGACCCACGAAGCAACCACTGTCAACAGCAAAACGACGCAGG CCGCAGAGACGAAACAAGGAACGCTTCGTTGGTCGATGACAATATGGTGG ACACCCAAACGCCCAGCCGCCCGACGCATCATATGCGCGTGTATGGGAGT ACTGGATTTACGAGAGTTCGGCAGAGTTTGGGGGCGTGGTTCTCCCAGCG AAAGGACATTCTGTGAAGACGGGAGCGCTCGTTGATCTGCGTAGTTTGAC ATCTGGTGTACCGACAGTGTTGAAATAGATCGACACATTCGGGATGGAGC CATGCACATCAACAAGAAGTTTGAGAAAAAGTACAGGCGCATTGGCAATA CGTAGTCGTTTACAGGTGAGCTGGCGATTTGGAACCATTTACAAGTTTTG AATGTTTTGTGCAAAAGCCGAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig713:804..12775-

>mRNA_P-littoralis_Contig713.2.3 ID=mRNA_P-littoralis_Contig713.2.3|Name=mRNA_P-littoralis_Contig713.2.3|organism=Pylaiella littoralis U1_48|type=CDS|length=2526bp|location=Sequence derived from alignment at P-littoralis_Contig713:804..12775- (Pylaiella littoralis U1_48)
ATGGAGGGGGCTAGAGGCCACGTACAACCAGCGGGAAGTGGTGGTTTCCC
TCGGCTGACCAATGCAGGGGTGGCGAAGACGAAGGTGCGAAGGCAGCATC
TGGAGAGCCTTTTCATCGTCTATCAAGCAAAAATCCTGCACGCTCTTGAC
AGAGATCGGTGGACAAAGCTCCTCTGTACCACGATTTCGAGTCTCCTCTC
AGTTATCCCCCTTCAATCTCTGACGAAGAGAGCTCGTCTGGGCGTTGTGA
TGTGCATCGTCGGGAGTGGAAGGACCCATCTGTTTTCGCCAACTGTTCTG
GCAGTTCTGGCCTGTGACTGGTTCGAAGATTGGGCGTCTTTCAAGCTGAT
ACAGGATACGGTCCGCCAGGCATCTCTGTCTCGCCTCCGGTCCGAATGTG
GTTCAACTGGCCTACCGTCTGAATGGTCACGGAAAAAAATGGCCAGTTTT
CTTGAGGAGGGTGTGGAAAACACTATCGTCGGCTCTTGGAGGGCTCTCGG
CCTCACGGGGGCAGCCAGGGAGCGCGTGGAGAAGACCGGAAGAGAGCTGC
GTGGGGTGGCAGCTCGGTGCTTAGGAGCTAGCGATCGGCCCTCAGCCAGG
AAGCTGTTGATCTGCTTTTTGGATTCCAACAGAATTGAAGGTTTCATTCA
AGCGCTGATCTCATGGGGCCAAGAACAACTCAGAGCATCCAAATCCACAA
TCTTCGACGAGGCCTTTCCTTTCCTCGAGACGAGGCAGCTTCAGGCCTCC
AGGCTGCGCGCCGACCAACGCGCAGCCGGTGATCTGGGGAACGACGTTGG
AACTGAATCCGATGGACATCTGGCAACAAAGGGAACAGGGGAGTCCACTA
ACACCCCATGGTCGTCATCACCAGCCGCGTGTATGACTAACCCTGCCGAT
ACGCAGGCCGAAAATAGCCGGTGGGGGGAAGGAAAGGAGGCGTCGATCGA
TGGGAGCAGGAAGCGAAGGAAGCTCGGGCCCTTACGCATGGACGAGCGGG
TGTTCAAGGGCGTTGCTGGGGGGGCAACCAGCATGTGGCGGCGTGGGGCT
ATCGAGGACTGTAGGGGCGATGGCACTTACAATATCAGATACGACGATGG
CGAGGTTGAGCCCCTGGTGCGGAGGGCTGACATTTTTGAGGTCCAAGGTA
GTGACTTGCCCCAGGAAACGCTGACGCCACCAGAGGTCAGTCGCCGACGC
TTTGATATCCACGACATCAGTGCGCGACGTTCTCACATCAAGACGAAGCG
CACGTTGTCCCGGGGGTCAGTGGGCGACGTTTCTCCTCTGTCTGCATCTC
CAAAGTCTAGCCCAGTGTGCGATGAACATGCGTCCGAATCTGCATCACGA
ACAATACAGGACGAGAACGAATTCTGGTTCGCTGCTGATGCCGATGATAT
TGGGGACGTGCAACTGGTTGCGCCCGGCAGTCTCAGACGATTGACTGAGC
GGGGCCACCAAAAACGCAGAGTGATCCAGGATGAGTGCGACCAGCCGGTG
TCTTCTTCACACGAAGATGACGGCCCTTCGTGCGATGCAGCTGCCCGAGA
TTGTCCAGTGAGCCTAGTCGCTAATCAAGAGTTGGAGAATACTCAACTGT
TGTTGTGGACTGAGCAAGACATTTCAGAGGAAGTGGCCGACAGCCAGGTG
GGGCATCGAGCAGAGGGGGGTAAGGATAGCCTCCAGGACAAGGAAGGTTT
TTGCCGCGGTCTTAACCAACGAGAAGCAGATTTGGCAGCGGACTGCAACG
GAAGATGTGTCTGCAATAATGAGGAGCGTGGCTCATGTGGGGTGGGCAGG
GAAGAAGACGAAGTGGAGACGGACGAGGAGCTGTCTGAGGAAACGCGTGG
AAAAGCGCGGGAAGAAAAGGGAGAGGCGGGGATTGGTCAGGAGGTAGAGA
CGAGGACGGGTAACGGAAAGGGAGGTCCAGAAGAGTCATTAGAAGAGGAA
GGGAAAGGCGAGAGCGAGGATCCTCACGACGAAGGGAAGGACGCCGACAA
CCGTGCAGATGATATAGGTCCCTTCGCTAGTGCGATGCCTTCAACGCCGC
CAGTCAACCAGACTTTGATACCGGAAAAACAAGGCGAGATGCGGAGCAAG
AAAGGTCAACTACGTGGACCGAACAGGGAAAGGAAGATCTCGGAATACCA
GCAAAACGACATATACAGCGGTAAGGCGGTGTCTTCATCTGTGACGGTGC
AACAGCCTATCCTCTCAGGTGCCGATGGGGGGCAGGCTGAAGTCGATACC
CCCACCCCGATTCTTCGTGTGCCGCCGACGATTCAGGACATGAGCATGGA
GCTTGTCGCCCAATTGGACGACCCACGAAGCAACCACTGTCAACAGCAAA
ACGACGCAGGCCGCAGAGACGAAACAAGGAACGCTTCGTTGGTCGATGAC
AATATGGTGGACACCCAAACGCCCAGCCGCCCGACGCATCATATGCGCGT
GTATGGGAGTACTGGATTTACGAGAGTTCGGCAGAGTTTGGGGGCGTGGT
TCTCCCAGCGAAAGGACATTCTGTGA
back to top