mRNA_P-littoralis_Contig713.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig713.1.1
Unique NamemRNA_P-littoralis_Contig713.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig713.1.1 vs. uniprot
Match: UPI00195F3444 (agmatine deiminase n=1 Tax=Scopulibacillus daqui TaxID=1469162 RepID=UPI00195F3444)

HSP 1 Score: 63.5 bits (153), Expect = 1.180e-10
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 1
Query:    1 MQTLFPEREVVQVKTLDIALGGGNIHCITQQQPL 102
            MQ LFP+REVVQV T +IALGGGNIHCITQQQPL
Sbjct:  331 MQALFPDREVVQVYTREIALGGGNIHCITQQQPL 364          
BLAST of mRNA_P-littoralis_Contig713.1.1 vs. uniprot
Match: A0A235BBD4_9BACL (Putative agmatine deiminase n=1 Tax=Paludifilum halophilum TaxID=1642702 RepID=A0A235BBD4_9BACL)

HSP 1 Score: 62.8 bits (151), Expect = 2.230e-10
Identity = 28/33 (84.85%), Postives = 31/33 (93.94%), Query Frame = 1
Query:    1 MQTLFPEREVVQVKTLDIALGGGNIHCITQQQP 99
            MQ+LFP+REVVQV T +IALGGGNIHCITQQQP
Sbjct:  331 MQSLFPDREVVQVHTREIALGGGNIHCITQQQP 363          
BLAST of mRNA_P-littoralis_Contig713.1.1 vs. uniprot
Match: A0A5S5BWZ3_9BACL (Putative agmatine deiminase n=1 Tax=Paenibacillus methanolicus TaxID=582686 RepID=A0A5S5BWZ3_9BACL)

HSP 1 Score: 61.6 bits (148), Expect = 5.760e-10
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 1
Query:    1 MQTLFPEREVVQVKTLDIALGGGNIHCITQQQPLGG 108
            ++ LFP+REVVQV T +IALGGGNIHCITQQQP+ G
Sbjct:  331 IRALFPDREVVQVNTREIALGGGNIHCITQQQPMCG 366          
BLAST of mRNA_P-littoralis_Contig713.1.1 vs. uniprot
Match: A0A087SB76_AUXPR (Agmatine deiminase n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SB76_AUXPR)

HSP 1 Score: 60.8 bits (146), Expect = 1.060e-9
Identity = 26/35 (74.29%), Postives = 31/35 (88.57%), Query Frame = 1
Query:    1 MQTLFPEREVVQVKTLDIALGGGNIHCITQQQPLG 105
            +Q +FP+REVVQV T +I LGGGN+HCITQQQPLG
Sbjct:  305 LQEVFPDREVVQVYTREILLGGGNVHCITQQQPLG 339          
BLAST of mRNA_P-littoralis_Contig713.1.1 vs. uniprot
Match: A0A1D1ZNK2_AUXPR (Uncharacterized protein (Fragment) n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZNK2_AUXPR)

HSP 1 Score: 60.8 bits (146), Expect = 1.110e-9
Identity = 26/35 (74.29%), Postives = 31/35 (88.57%), Query Frame = 1
Query:    1 MQTLFPEREVVQVKTLDIALGGGNIHCITQQQPLG 105
            +Q +FP+REVVQV T +I LGGGN+HCITQQQPLG
Sbjct:  384 LQEVFPDREVVQVYTREILLGGGNVHCITQQQPLG 418          
BLAST of mRNA_P-littoralis_Contig713.1.1 vs. uniprot
Match: UPI001ADCD2E9 (agmatine deiminase n=1 Tax=Alkalihalobacillus sp. BA299 TaxID=2815938 RepID=UPI001ADCD2E9)

HSP 1 Score: 60.5 bits (145), Expect = 1.480e-9
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 1
Query:    1 MQTLFPEREVVQVKTLDIALGGGNIHCITQQQP 99
            +Q LFPER+VVQV T +IALGGGNIHCITQQQP
Sbjct:  331 IQELFPERKVVQVNTREIALGGGNIHCITQQQP 363          
BLAST of mRNA_P-littoralis_Contig713.1.1 vs. uniprot
Match: UPI001D10BFC1 (agmatine deiminase family protein n=1 Tax=Parabacteroides distasonis TaxID=823 RepID=UPI001D10BFC1)

HSP 1 Score: 55.5 bits (132), Expect = 2.530e-9
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 1
Query:    1 MQTLFPEREVVQVKTLDIALGGGNIHCITQQQPLG 105
            +Q +FP+REVV V T ++  GGGNIHCITQQQP G
Sbjct:   16 VQAMFPDREVVGVPTREVVYGGGNIHCITQQQPAG 50          
BLAST of mRNA_P-littoralis_Contig713.1.1 vs. uniprot
Match: A0A4Q4J8W3_9BACL (Putative agmatine deiminase n=1 Tax=Sporolactobacillus sp. THM7-7 TaxID=2511172 RepID=A0A4Q4J8W3_9BACL)

HSP 1 Score: 59.7 bits (143), Expect = 2.770e-9
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 1
Query:    4 QTLFPEREVVQVKTLDIALGGGNIHCITQQQPL 102
            Q L+P+R VVQV+T +IALGGGNIHCITQQQPL
Sbjct:  332 QNLYPDRRVVQVQTREIALGGGNIHCITQQQPL 364          
BLAST of mRNA_P-littoralis_Contig713.1.1 vs. uniprot
Match: UPI001BD127E6 (agmatine deiminase n=1 Tax=Ancylobacter dichloromethanicus TaxID=518825 RepID=UPI001BD127E6)

HSP 1 Score: 58.9 bits (141), Expect = 5.200e-9
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 1
Query:    1 MQTLFPEREVVQVKTLDIALGGGNIHCITQQQPLG 105
            +  LFPEREVV V T +I LGGGNIHCITQQQPLG
Sbjct:  326 LSRLFPEREVVGVPTHEIILGGGNIHCITQQQPLG 360          
BLAST of mRNA_P-littoralis_Contig713.1.1 vs. uniprot
Match: A0A6B1E4F8_9CHLR (Putative agmatine deiminase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A6B1E4F8_9CHLR)

HSP 1 Score: 58.9 bits (141), Expect = 5.210e-9
Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = 1
Query:   10 LFPEREVVQVKTLDIALGGGNIHCITQQQPLGG 108
            LFP+RE+VQ++  +I LGGGNIHCITQQQP GG
Sbjct:  333 LFPQREIVQIQAREILLGGGNIHCITQQQPAGG 365          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig713.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00195F34441.180e-1085.29agmatine deiminase n=1 Tax=Scopulibacillus daqui T... [more]
A0A235BBD4_9BACL2.230e-1084.85Putative agmatine deiminase n=1 Tax=Paludifilum ha... [more]
A0A5S5BWZ3_9BACL5.760e-1075.00Putative agmatine deiminase n=1 Tax=Paenibacillus ... [more]
A0A087SB76_AUXPR1.060e-974.29Agmatine deiminase n=3 Tax=Auxenochlorella prototh... [more]
A0A1D1ZNK2_AUXPR1.110e-974.29Uncharacterized protein (Fragment) n=2 Tax=Auxenoc... [more]
UPI001ADCD2E91.480e-981.82agmatine deiminase n=1 Tax=Alkalihalobacillus sp. ... [more]
UPI001D10BFC12.530e-965.71agmatine deiminase family protein n=1 Tax=Parabact... [more]
A0A4Q4J8W3_9BACL2.770e-978.79Putative agmatine deiminase n=1 Tax=Sporolactobaci... [more]
UPI001BD127E65.200e-977.14agmatine deiminase n=1 Tax=Ancylobacter dichlorome... [more]
A0A6B1E4F8_9CHLR5.210e-972.73Putative agmatine deiminase n=1 Tax=Chloroflexi ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig713contigP-littoralis_Contig713:178..303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3075.A0A087SB76
PFAMsPAD_porph
Model size126
Max annot lvl33090|Viridiplantae
KEGG rclassRC00177
KEGG koko:K10536
KEGG ReactionR01416
KEGG Pathwayko00330,ko01100,map00330,map01100
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.74e-10
EggNOG OGsCOG2957@1|root,2QUHM@2759|Eukaryota,37HIX@33090|Viridiplantae
EC3.5.3.12
Descriptionagmatine
Cds size126
COG categoryE
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791487.991741-CDS-P-littoralis_Contig713:177..3031680791487.991741-CDS-P-littoralis_Contig713:177..303Pylaiella littoralis U1_48CDSP-littoralis_Contig713 178..303 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig713.1.1prot_P-littoralis_Contig713.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig713 178..303 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig713.1.1

>prot_P-littoralis_Contig713.1.1 ID=prot_P-littoralis_Contig713.1.1|Name=mRNA_P-littoralis_Contig713.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=42bp
MQTLFPEREVVQVKTLDIALGGGNIHCITQQQPLGGSMKQT*
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mRNA from alignment at P-littoralis_Contig713:178..303+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig713.1.1 ID=mRNA_P-littoralis_Contig713.1.1|Name=mRNA_P-littoralis_Contig713.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=126bp|location=Sequence derived from alignment at P-littoralis_Contig713:178..303+ (Pylaiella littoralis U1_48)
ATGCAGACGCTTTTTCCAGAACGAGAGGTGGTACAAGTCAAAACACTGGA TATCGCTTTGGGGGGAGGCAACATTCACTGCATTACGCAGCAGCAGCCTC TTGGGGGTTCAATGAAGCAGACTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig713:178..303+

>mRNA_P-littoralis_Contig713.1.1 ID=mRNA_P-littoralis_Contig713.1.1|Name=mRNA_P-littoralis_Contig713.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=126bp|location=Sequence derived from alignment at P-littoralis_Contig713:178..303+ (Pylaiella littoralis U1_48)
ATGCAGACGCTTTTTCCAGAACGAGAGGTGGTACAAGTCAAAACACTGGA
TATCGCTTTGGGGGGAGGCAACATTCACTGCATTACGCAGCAGCAGCCTC
TTGGGGGTTCAATGAAGCAGACTTGA
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