mRNA_P-littoralis_Contig713.41.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig713.41.1
Unique NamemRNA_P-littoralis_Contig713.41.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig713.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig713contigP-littoralis_Contig713:142573..143071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size323
Hectar predicted targeting categoryother localisation
Exons2
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791487.9292738-CDS-P-littoralis_Contig713:142572..1427711680791487.9292738-CDS-P-littoralis_Contig713:142572..142771Pylaiella littoralis U1_48CDSP-littoralis_Contig713 142573..142771 -
1680791487.9416463-CDS-P-littoralis_Contig713:142949..1430501680791487.9416463-CDS-P-littoralis_Contig713:142949..143050Pylaiella littoralis U1_48CDSP-littoralis_Contig713 142950..143050 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791487.9556186-UTR-P-littoralis_Contig713:143050..1430711680791487.9556186-UTR-P-littoralis_Contig713:143050..143071Pylaiella littoralis U1_48UTRP-littoralis_Contig713 143051..143071 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig713.41.1prot_P-littoralis_Contig713.41.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig713 142573..143050 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig713.41.1

>prot_P-littoralis_Contig713.41.1 ID=prot_P-littoralis_Contig713.41.1|Name=mRNA_P-littoralis_Contig713.41.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MEFGGDDSADGAGGAGSGVPDKLCDACTPPATSSYRCVVCNMTHTGGGCG
ASESFGQRDDFAHSLGDKARICVKCKPALEQQGRASNQKERAADGVVTSR
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mRNA from alignment at P-littoralis_Contig713:142573..143071-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig713.41.1 ID=mRNA_P-littoralis_Contig713.41.1|Name=mRNA_P-littoralis_Contig713.41.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=499bp|location=Sequence derived from alignment at P-littoralis_Contig713:142573..143071- (Pylaiella littoralis U1_48)
GACGATGAACCGGACGGCAACATGGAGTTTGGTGGAGATGACAGCGCGGA
TGGCGCCGGTGGTGCTGGCTCTGGAGTACCAGATAAGCTTTGTGACGCAT
GCACGCCACCAGCCACTTCAAGGTACGGGGACGTACGTACCCCTGATTTT
CTTTCGGTTCATTTGAGCGGTTGCGGTTCGCCGTGGCCGAATTTTCGGTT
CGTTTGGGCGACTCCTAGGTAGCGATGAACAAGGTACGCAAACCAGCCAT
TTAAAACGAAGCACATGTCTCCGTTGTTTATCTTGTTACCTGTCAAGCAG
CTACCGTTGCGTAGTTTGCAACATGACGCACACAGGAGGCGGTTGCGGTG
CATCCGAGAGCTTTGGCCAACGCGACGACTTTGCCCACAGCCTTGGCGAC
AAAGCGAGAATCTGTGTGAAATGTAAGCCCGCCCTGGAGCAGCAGGGACG
AGCTTCCAACCAAAAGGAGAGGGCGGCTGACGGCGTTGTCACGTCCAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig713:142573..143071-

>mRNA_P-littoralis_Contig713.41.1 ID=mRNA_P-littoralis_Contig713.41.1|Name=mRNA_P-littoralis_Contig713.41.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig713:142573..143071- (Pylaiella littoralis U1_48)
ATGGAGTTTGGTGGAGATGACAGCGCGGATGGCGCCGGTGGTGCTGGCTC
TGGAGTACCAGATAAGCTTTGTGACGCATGCACGCCACCAGCCACTTCAA
GCTACCGTTGCGTAGTTTGCAACATGACGCACACAGGAGGCGGTTGCGGT
GCATCCGAGAGCTTTGGCCAACGCGACGACTTTGCCCACAGCCTTGGCGA
CAAAGCGAGAATCTGTGTGAAATGTAAGCCCGCCCTGGAGCAGCAGGGAC
GAGCTTCCAACCAAAAGGAGAGGGCGGCTGACGGCGTTGTCACGTCCAGG
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