mRNA_P-littoralis_Contig118.85.10 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig118.85.10 vs. uniprot
Match: A0A6H5KZY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZY8_9PHAE) HSP 1 Score: 874 bits (2259), Expect = 1.040e-287 Identity = 700/1403 (49.89%), Postives = 784/1403 (55.88%), Query Frame = 1
Query: 163 MGNSSGKASDEPLRGALRMLLEGPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAELEAQ--EEIWMGIFGDSMEEEEFFEAFSAADATAMRVLQPGNLKLLAREALSNISRFMESRQTSPPEFTVHASVRVLTRVFPALLSDPGLRNWCWRRRSLSHLLSYLENQEDTPKRNRNGHQNXXXXXXXXXXXXXXXXXXXXXHLPRGRFPAPEEGLGR-------TSAQSPXXXXXXXXXPHRPRASSGEPTAGGAREATGSSSSSGDAGINCKPY--EGVVDGGEPDAD-----------------GVADNFPVCFASVALHAATNLLSFPGFCVDDEAADWDDYYTPIPALHYGIREASIIWAPGVAVTEHNMRQVSSLDSNRVEVLRLLASMLSLPLFLDTPSTVS-----------------------------------------FRF---LFYSLLNLAVVGRALDG------VDSGGGGG-MRWLGFGGGGGRRGXXXGERAGMEGAPQSLTEWSLQLLALLLRHGRPYEELLQKRGVDLAASGIVPAFGSIPRPVELSAEMANGYNCFRRCVFVVHSDDDLGAIALGLLRHMDDVRLRKTRPQGSVLSIHPETLMIFAAFVHENPRFVPRLAASQELVRATAVSICHFLEAVVATMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTQPPLGEEVWLLVLLSRLLLKLSENERFMATLVDILVRGGGGGGRGVEFSALEMDEAPGTTMIDMVLALSVWTLARGGKGGAVAAPALAAVARNACPFLTAGMRRPTAEWMLDALELYLDGAGADAGAVPGTDDGDEGAHHAEAFYWKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLLLEGLATAVVFXXXXQAELVLAMVYRSRASPAVHDXXXXXXXXXXXXXXV-------------GGVGVFRWLAARGGMIDSDXXXXXXXXXXXXXGCYWRGGPAAVASLGEGMRAEGEAESPAMEHCCWFECRVASAPWEGWPMRRVLCG---------GGGSXXXXXXXXXXLEQERASEVRALAAFARSNVLRPSGLCPPWDDDGDDSSDEGXXXXXXXXXXXLEEGGGEGDARRPNAAVPKRSAHVKRXXXXXXXXXXGDGGVGYMEWGAAAITGAFGYFTSTAPRNTPTVVDAEAAEAEVQARQDSGREVQSAATIPPFGGAAAAPAVSDVGLVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTALTQDVRAGIVGGG--------GGFGESVGVLTRVLAVEEPWQSIYLWSLLFIKTTADLRLFDSRTVRLFEVMEET--DDSDLASPSFDE-GTEVDDDEYYQEAFFPGE--EADLPSDPEEEQGG 4029
MGNS+GK+SDE LR A++MLLE PM XXXXXXXXXXXXXXXXXXXXXXXXXXXXX E +WMG+FG ++EE EFFE FSA+DATAMR+ QPGNLKLLAREALSNI RF+ESRQTSP TV+AS+RVLTRV PALLS P LR+WCW RR+L LLS+LEN E+ R RNG XXXXXXXX PRGRFP P TS SP ASSG + G S +NC+PY G D GE D G D FPVCFASVALHA T+LLSFPGFCVDDEA +WDDYYTPIP LHYGI+EA+IIWAPGVAVTEHNMRQVSS DSNRVE LRLLA++LSLPLFLDTPS + +F LFYSLLNLAVV RA G GGG G MRW GGG R G G RA EG QSL EW+LQ+LALLLRHGRPY+ELL++RGVDLAASG P +GS+PRPVE SAE A GYNCFRRCVFVVHSDDDLGAIALGLLRH+DD RLR+TRPQGS+LSIH E+LM+FAAFVHENPRFVPRLAAS+ELVR TAV +CHFL VA + P GEE+ LLVLLSRLLL LS+N RF+A LVD+L GG GG RG EF+A ++ +APGTTMI++VL+L V+ LAR G GGAV APALAAVARN CPFLT GMRR TAE +LDALE+YL G G+D G V +G GA YW SLLLEGLA A VF QAELV AM+ RSR +P XXXXXXXXXXXX G GV RWLAA GGM++ V S A+ EAE A E WFE RV S PWEGW MRRVL + EQ+RA+ VRALA+ AR VLRP+GLCPPW D E GG+ D P A P+ DG GY + GAAA+ A GY TST P D AA R G A+ AVS V LV XXXXXXXXXXXXXXXX AG+ G G GG GE V VLTRV AVEEPWQSIYLWSLLF KTTADLRLFDSR VRLFE++EE D + D GTEVD+ E+Y+E+FFPGE E + PS P+ E G
Sbjct: 1 MGNSAGKSSDESLREAVQMLLEVPMVGPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAVWMGVFGCAIEEGEFFEVFSASDATAMRLRQPGNLKLLAREALSNICRFVESRQTSPHMVTVYASIRVLTRVLPALLSTPELRSWCWARRTLPQLLSFLENNEEQSPR-RNGQD------VRQXXXXXXXXGRRQEQTPRGRFPTPXXXXXXXXXXXXMTSPPSPAELDDGV-------ASSGSGVSTGXXXXXXXS-------VNCRPYGGSGEDDDGEGDGGKGXXXXXXXXXXXXXRGGAGDEFPVCFASVALHAVTSLLSFPGFCVDDEAMEWDDYYTPIPELHYGIKEAAIIWAPGVAVTEHNMRQVSSFDSNRVETLRLLATLLSLPLFLDTPSPRTPTIPPQAPPLRRRRWPSRAPPPSIPGKPLPNPTAALAASRHLQFSSELFYSLLNLAVVSRAAPGGRAAGRASGGGGQGVMRWFALGGG--RTGGAAGTRAEAEGGAQSLAEWALQMLALLLRHGRPYDELLKQRGVDLAASGAAPVYGSVPRPVEFSAERARGYNCFRRCVFVVHSDDDLGAIALGLLRHVDDARLRRTRPQGSLLSIHQESLMVFAAFVHENPRFVPRLAASEELVRGTAVCVCHFLRGAVAATIEAAEQQHLDADADADGEAADAMEGGNRGID----------NRRKPHGEEIGLLVLLSRLLLTLSDNVRFVAMLVDMLAAGGAGG-RGAEFAAPDLGDAPGTTMIEVVLSLCVYALARAGTGGAVVAPALAAVARNLCPFLTRGMRRQTAELLLDALEVYLVGGGSDGGLVEEEGEGG-GATAPNPCYWS-----------------------------VASLLLEGLAAAAVFHHEEQAELVKAMIGRSRDNPTFLGKQXXXXXXXXXXXXXXXXXXAGQETRPWAGGGVLRWLAAHGGMLEGGTEVGDGDGGVVGD---------VVGSWSREASAK-EAERLASEQF-WFESRVPSLPWEGWAMRRVLWPLLSLVTAPPPSTTAPGTPGPAGSREQDRAAAVRALASSARRKVLRPAGLCPPWGD----------------------EDGGDED---PRARGPE------------------DGNGGYAQRGAAAVGDAAGYLTSTPP-------DTAAAAXXAPGRSSPG--------------ASRGTAVSGVSLV----------------------GEDGRRLPXXXXXXXXXXXXXXXXXXXXXXXXAGVGGEGVFPGREKEGGGGE-VEVLTRVAAVEEPWQSIYLWSLLFTKTTADLRLFDSREVRLFEIIEEEAGDYGERHGNGDDSVGTEVDE-EFYEESFFPGEGGEGESPSPPKSEPEG 1240
BLAST of mRNA_P-littoralis_Contig118.85.10 vs. uniprot
Match: D8LIB9_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIB9_ECTSI) HSP 1 Score: 323 bits (827), Expect = 5.870e-95 Identity = 203/369 (55.01%), Postives = 226/369 (61.25%), Query Frame = 1
Query: 421 EAFSAADATAMRVLQPGNLKLLAREALSNISRFMESRQTSPPEFTVHASVRVLTRVFPALLSDPGLRNWCWRRRSLSHLLSYLENQED-TPKRNRNGHQNXXXXXXXXXXXXXXXXXXXXXHLPRGRFPAPEE-------GLGRTSAQSPXXXXXXXXXPHRPRASSGEPTAGGAREATGSSSSSGDAGINCKPYEGVVDGGEPDADG--------------------VADNFPVCFASVALHAATNLLSFPGFCVDDEAADWDDYYTPIPALHYGIREASIIWAPGVAVTEHNMRQVSSLDSNRVEVLRLLASMLSLPLFLDTPSTVSFRFLFYSLLNLAVVGRALDGVDS----GGGGG---MRWLG 1422
E FSA+DATAMR+ QPGNLKLLAREALSNISRFMESRQTSP TV+AS+RVLTRV PALLS P LR+WCW RR+L LLSYL N E+ +P RN X PRGRFP PE TS SP ASSG G+NC+PY G DG + D+FPVCFASVALHAAT+LLSFPGFCVDDEA +W+DYYTPIP LHYGI+EA+IIWAPGVAVTEHNMRQVSS DSNRVE LRLLA++LSLPLFLDTPS S LFYSLLNLAVV +A+ G ++ GGGGG MRW G
Sbjct: 27 EVFSASDATAMRLRQPGNLKLLAREALSNISRFMESRQTSPHMVTVNASIRVLTRVLPALLSSPELRSWCWARRTLPQLLSYLRNNEEHSPPRN-----------GQDVRQQQQQQGRRXEQTPRGRFPTPEPIDAEXXXXXDTTSPPSPTELDDGV-------ASSGXXXXXXXXXXXXXXXXX-RGGVNCRPYGGSGDGDDXXXXXXXXXXXXXXXXXXXXXXXXXAGDDFPVCFASVALHAATSLLSFPGFCVDDEAMEWNDYYTPIPDLHYGIKEAAIIWAPGVAVTEHNMRQVSSFDSNRVETLRLLATLLSLPLFLDTPSPFSSE-LFYSLLNLAVVNKAVPGGEAAGRAGGGGGQGVMRWFG 375
BLAST of mRNA_P-littoralis_Contig118.85.10 vs. uniprot
Match: D8LIC0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIC0_ECTSI) HSP 1 Score: 324 bits (831), Expect = 3.360e-93 Identity = 186/305 (60.98%), Postives = 206/305 (67.54%), Query Frame = 1
Query: 1516 LLALLLRHGRPYEELLQKRGVDLAASGIVPAFGSIPRPVELSAEMANGYNCFRRCVFVVHSDDDLGAIALGLLRHMDDVRLRKTRPQGSV--LSIHPETLMIFAAFVHENPRFVPRLAASQELVRATAVSICHFLEAVVATMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTQPPLGEEVWLLVLLSRLLLKLSENERFMATLVDILVRGGGGGGRGVEFSALEMDEAPGTTMIDMVLALSVWTLARGGKGGAVAAPALAAVARNACPFLTAGMRRPTAEWMLDALELYLDG 2424
+LALLLRHGRPY+ELL++RGVDLAASG P FGS+PRPVE SAE A GYNCFRRCVFVVHSDDDLGAIALGLLRHMDD RLR+TRPQGS+ LSIH ETLMIFAAFVHENPRFVPRLAAS EEV LLVLLSRLLL LS+NERF+A LVD+L GGG GGRG EF+A ++ +APGTTMI++VL+L V+ LAR G GGAV APALAAVARN CPFLT GMRR TAE +LDALE+YL G
Sbjct: 1 MLALLLRHGRPYDELLKQRGVDLAASGAAPVFGSVPRPVEFSAERARGYNCFRRCVFVVHSDDDLGAIALGLLRHMDDSRLRRTRPQGSLSLLSIHQETLMIFAAFVHENPRFVPRLAAS----------------------------------------------------------------------EEVGLLVLLSRLLLTLSDNERFVAMLVDMLAAGGGAGGRGAEFAAPDLGDAPGTTMIEVVLSLCVYALARAGTGGAVVAPALAAVARNLCPFLTRGMRRQTAESLLDALEVYLVG 235 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig118.85.10 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig118.85.10 >prot_P-littoralis_Contig118.85.10 ID=prot_P-littoralis_Contig118.85.10|Name=mRNA_P-littoralis_Contig118.85.10|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1382bp MWTSPHIKIQYPFFGWSSLDRFFPELRSRAVGNASPRGRGTHLKLNMGNSback to top mRNA from alignment at P-littoralis_Contig118:324688..358869- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig118.85.10 ID=mRNA_P-littoralis_Contig118.85.10|Name=mRNA_P-littoralis_Contig118.85.10|organism=Pylaiella littoralis U1_48|type=mRNA|length=34182bp|location=Sequence derived from alignment at P-littoralis_Contig118:324688..358869- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig118:324688..358869- >mRNA_P-littoralis_Contig118.85.10 ID=mRNA_P-littoralis_Contig118.85.10|Name=mRNA_P-littoralis_Contig118.85.10|organism=Pylaiella littoralis U1_48|type=CDS|length=4146bp|location=Sequence derived from alignment at P-littoralis_Contig118:324688..358869- (Pylaiella littoralis U1_48)back to top |