mRNA_P-littoralis_Contig118.82.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig118.82.1
Unique NamemRNA_P-littoralis_Contig118.82.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig118.82.1 vs. uniprot
Match: A0A6H5KZS0_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZS0_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 4.010e-16
Identity = 46/60 (76.67%), Postives = 51/60 (85.00%), Query Frame = 3 
Query: 1074 ARYLXXXXXXRWSKASSYQSRQRVANSRPRHKGRFLPLESEFLPIAELQKRQRAMMKQMQ 1253
            ARYL      RWSKAS YQSRQRVANSRPRHKGRFLPLESEF+PIAE+Q+RQR +M QM+
Sbjct:  310 ARYLAKKQRRRWSKASCYQSRQRVANSRPRHKGRFLPLESEFVPIAEVQRRQRVLMAQMR 369
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BLAST of mRNA_P-littoralis_Contig118.82.1 vs. uniprot
Match: D8LIC1_ECTSI (CCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIC1_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 4.800e-15
Identity = 48/62 (77.42%), Postives = 52/62 (83.87%), Query Frame = 3 
Query: 1074 ARYLXXXXXXRWSK--ASSYQSRQRVANSRPRHKGRFLPLESEFLPIAELQKRQRAMMKQMQ 1253
            ARYL       WSK  ASSYQSRQRVANSRPRHKGRFLPLESEF+PIAELQ+RQRA+M QM+
Sbjct:  262 ARYLAKKQRRCWSKPAASSYQSRQRVANSRPRHKGRFLPLESEFVPIAELQRRQRALMVQMR 323
[Close]
BLAST of mRNA_P-littoralis_Contig118.82.1 vs. uniprot
Match: A0A6H5KKD0_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD0_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 5.020e-15
Identity = 48/62 (77.42%), Postives = 52/62 (83.87%), Query Frame = 3 
Query: 1074 ARYLXXXXXXRWSK--ASSYQSRQRVANSRPRHKGRFLPLESEFLPIAELQKRQRAMMKQMQ 1253
            ARYL       WSK  ASSYQSRQRVANSRPRHKGRFLPLESEF+PIAELQ+RQRA+M QM+
Sbjct:  263 ARYLAKKQRRCWSKPAASSYQSRQRVANSRPRHKGRFLPLESEFVPIAELQRRQRALMVQMR 324
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig118.82.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KZS0_9PHAE4.010e-1676.67CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LIC1_ECTSI4.800e-1577.42CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KKD0_9PHAE5.020e-1577.42CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig118contigP-littoralis_Contig118:321291..324290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3000
Hectar predicted targeting categoryother localisation
Exons1
Cds size1317
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789494.9328625-UTR-P-littoralis_Contig118:321290..3214091680789494.9328625-UTR-P-littoralis_Contig118:321290..321409Pylaiella littoralis U1_48UTRP-littoralis_Contig118 321291..321409 +
1680789494.9562712-UTR-P-littoralis_Contig118:322726..3242901680789494.9562712-UTR-P-littoralis_Contig118:322726..324290Pylaiella littoralis U1_48UTRP-littoralis_Contig118 322727..324290 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789494.9441714-CDS-P-littoralis_Contig118:321409..3227261680789494.9441714-CDS-P-littoralis_Contig118:321409..322726Pylaiella littoralis U1_48CDSP-littoralis_Contig118 321410..322726 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig118.82.1prot_P-littoralis_Contig118.82.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig118 321410..322726 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig118.82.1

>prot_P-littoralis_Contig118.82.1 ID=prot_P-littoralis_Contig118.82.1|Name=mRNA_P-littoralis_Contig118.82.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=439bp
MHDDETTDMCSPFWAFPGATRCRLGISHPTVNGGAAAVPADTSTMNADAD
SEIGIGINTSEANNTAVQDHHHQHWDEDANDVFALGTGTGGGDGVAVAGE
EEFIATDTDGVLDDFLALVSSGDGDGSAGMDTAVMMGLGGDGVNIAEEDL
VWLGEGMDLTAALLPPPRAATDTDFATGVDALNSALASSVHEIEPLPLPI
VVEGAAAAAAVAATTPVAAAVPAPAAPPVVLSQAAGDTGPTPSRVAGGGG
GLIAAVVGTTGRGEDVAMSRNGDDAAAAAAVITTTNESGSTHDSVAGGVS
ASGGGEVDRKQELRRQKVARYLAKKKRRRWSKASSYQSRQRVANSRPRHK
GRFLPLESEFLPIAELQKRQRAMMKQMQEKAATMAATAAESHQVPPPIQQ
EVAGGAASLLSPGGMAAAAGVSLSGRPLSPDCVHQVAI*
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mRNA from alignment at P-littoralis_Contig118:321291..324290+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig118.82.1 ID=mRNA_P-littoralis_Contig118.82.1|Name=mRNA_P-littoralis_Contig118.82.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3000bp|location=Sequence derived from alignment at P-littoralis_Contig118:321291..324290+ (Pylaiella littoralis U1_48)
GGTACTCGATTATATCCCAGAAATATCGTGCGACACACAGGCACATACAC
AAACTCACGCCGGAGAAATAAAAAACACTTTTTTCCTCGTCGAGTGTTAA
TTTAAGAGTCTTCGCCGTCATGCACGACGACGAGACCACCGACATGTGTT
CCCCCTTCTGGGCGTTCCCGGGGGCGACGCGCTGCCGCCTGGGCATATCC
CACCCCACCGTTAACGGCGGCGCAGCAGCGGTGCCGGCGGACACCAGCAC
GATGAACGCCGATGCCGACAGCGAGATCGGCATCGGCATCAACACCAGCG
AGGCCAACAACACCGCTGTACAAGACCACCACCACCAGCACTGGGACGAA
GACGCGAACGACGTCTTTGCTCTCGGCACCGGAACCGGCGGCGGCGACGG
CGTCGCTGTCGCAGGCGAGGAGGAGTTTATCGCCACCGACACGGACGGGG
TGCTCGACGACTTCTTGGCGCTCGTCAGCTCCGGCGACGGCGACGGCAGC
GCGGGCATGGACACCGCCGTGATGATGGGTTTGGGCGGTGACGGCGTCAA
CATCGCGGAGGAAGACCTGGTCTGGCTGGGGGAAGGCATGGACTTGACGG
CTGCCCTCCTGCCACCCCCGCGCGCGGCGACAGACACCGATTTTGCAACG
GGTGTGGATGCCTTGAACAGCGCGCTTGCTTCCTCCGTCCATGAAATCGA
GCCTCTGCCGTTGCCCATTGTGGTGGAGGGCGCAGCGGCGGCGGCAGCGG
TGGCAGCTACAACGCCTGTCGCCGCCGCTGTTCCTGCTCCTGCTGCGCCT
CCTGTGGTGCTCTCCCAGGCGGCGGGAGACACCGGTCCAACGCCGTCGCG
TGTAGCAGGAGGTGGGGGCGGTTTGATTGCCGCTGTCGTGGGGACGACGG
GTCGCGGTGAAGACGTAGCCATGAGCAGAAACGGCGACGACGCTGCTGCT
GCTGCTGCCGTCATAACCACCACCAACGAGAGCGGCAGCACGCACGACTC
CGTCGCCGGTGGCGTCAGCGCCAGCGGCGGTGGAGAGGTCGACCGAAAGC
AAGAGCTGCGCCGGCAGAAGGTGGCCCGGTACCTGGCCAAGAAGAAGCGG
CGGCGCTGGTCGAAGGCGTCCTCGTACCAGAGCCGGCAGCGCGTGGCCAA
CTCGAGGCCGCGCCACAAGGGACGGTTCCTGCCCCTCGAATCGGAGTTCC
TGCCGATCGCGGAGCTGCAGAAGCGGCAGCGGGCTATGATGAAGCAGATG
CAGGAAAAGGCAGCGACGATGGCGGCAACCGCGGCAGAGTCGCATCAGGT
GCCTCCTCCGATCCAGCAGGAAGTAGCAGGAGGGGCTGCGTCGCTTTTGT
CCCCGGGGGGCATGGCGGCTGCTGCCGGTGTGTCCTTGAGCGGACGGCCG
CTGTCTCCCGATTGCGTCCACCAGGTTGCCATATGATTTTGTTTGTTCCA
TCACACACTGATCCGGGATGAGACTGGCCATCCTCTGTAACCTGGTCAAC
TTGCCCCATTCATTCCAATGGGTCGATCGGTAATTTTTTGCAAACTATGT
CAGTTATGTGTTTTACGTGAAGTATATTTGCAAATGATACTAGAGATAAA
CGAAGTTTGTTCAACGAGAGTTTTATACTGACCGGAGTTGCCCCTGGAAT
TTTTTCCCCATGGTATATATAATACCTGCAGGTAAATGGGTATGTGGATT
GTTCGGAATGTTTGCTTATTGGTGTGAGGACACTTTTGAGAGGAAAGTAA
GGTCAATTGATTTTTTTTTTACATTTTTTCCTGGAGCAGGATTTTGACTT
TTTTGCATGATCCATACATTTATCTTACGGCAGGTACACCAGTGGGTAGG
AATATTTTATTCGTGATGTTAGCAATTTTGCGAGAGACTTTTGACGGACC
CAAGACGGCTGCTACGTTGGAGGGGGCCTGTAGAGGGGTGCGCGGGCGGC
CATGTCATATGAGTCCGTCTGTTTCATTGAGCACTATTGCAATTTAGCAT
ATCATAGTTGTAGGCCTGAAGCGAAGGGGTGAAGTCAGCGCGATTCAAAC
ATTTGAAGTGTTGAATCAACCTTCGTAGGTAGCAGCGAGGATAGAGAGAG
ATAAAAGTTGCCCGCAGTTTTCTGACTGGCCAAATTTTTTGTTCAATCTT
TCTCGTCCCCCTCGTGACCGAGGGGGCTGGCTGTGCAGCCCGTCTGCATA
GCACTTTTTCAGTAGGAGTACCAGGATATTTTTTTTGCCTGCTTTCTTTT
TAGCAGAGGCACCTTCATCTAGAACCCTCCGTCTTGAAGGGTTTCGGGGG
ATGAAGACAACGCCGTAAAATCTTCCACTTCATTCCTTCCGACAGTGAGA
AACACGTGAGTGCCCGCGGATTTTATATTGGAATGTCGTGTTTTTTATTT
CATGCGGGGGGGACGCCGGCTCATCGATCTATCATATAATTTAGAGTATA
TTACCGTATACGGAGTATGACACAAGATAACATACCCCGTGTTAAGCTTT
TTGCATTCCGTATAACTCCACGACCAGGAGGGTGCCACTCCCGAAAAGGG
TGGTTTTGGAAAGATCTCGTCGAGAGCTTTCGTATGACGGGCTGTTTGAT
GTTCGCACCCTCCTGGTTGTGGAGTAATACGGAATGCAAAAAACCTAACA
CGTGGTGTGTTATCTTGTGTCATATACGGTACTCCAAAGAAGGTAGTTTG
ATGAAGTGGCTTGTTTTTATACGTTTGCGTGGCGTGTTTGACGGGCAGAT
GACGACATGGAAGTGTTTCCTGTTCGGTAAGTGGGTTTGTCTGGCACATT
GTGAATGTTGATTTTCACAGTGGCTCACTCAAAGCCAAGCCCGTGGTCAC
AAACCAGGCAGATACCGTGCTCAGAGCAAAAACAATGAAACAAAAACGAA
ACACAGAAACCGGAGGTCGGTCTTCGTAGTAGTGATACGAAGGTGGCGAT
GATGATGATGATGGTAGTGGTGGTGGTGCAGCAAAGTCCGTGCTCGGCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig118:321291..324290+

>mRNA_P-littoralis_Contig118.82.1 ID=mRNA_P-littoralis_Contig118.82.1|Name=mRNA_P-littoralis_Contig118.82.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1317bp|location=Sequence derived from alignment at P-littoralis_Contig118:321291..324290+ (Pylaiella littoralis U1_48)
ATGCACGACGACGAGACCACCGACATGTGTTCCCCCTTCTGGGCGTTCCC
GGGGGCGACGCGCTGCCGCCTGGGCATATCCCACCCCACCGTTAACGGCG
GCGCAGCAGCGGTGCCGGCGGACACCAGCACGATGAACGCCGATGCCGAC
AGCGAGATCGGCATCGGCATCAACACCAGCGAGGCCAACAACACCGCTGT
ACAAGACCACCACCACCAGCACTGGGACGAAGACGCGAACGACGTCTTTG
CTCTCGGCACCGGAACCGGCGGCGGCGACGGCGTCGCTGTCGCAGGCGAG
GAGGAGTTTATCGCCACCGACACGGACGGGGTGCTCGACGACTTCTTGGC
GCTCGTCAGCTCCGGCGACGGCGACGGCAGCGCGGGCATGGACACCGCCG
TGATGATGGGTTTGGGCGGTGACGGCGTCAACATCGCGGAGGAAGACCTG
GTCTGGCTGGGGGAAGGCATGGACTTGACGGCTGCCCTCCTGCCACCCCC
GCGCGCGGCGACAGACACCGATTTTGCAACGGGTGTGGATGCCTTGAACA
GCGCGCTTGCTTCCTCCGTCCATGAAATCGAGCCTCTGCCGTTGCCCATT
GTGGTGGAGGGCGCAGCGGCGGCGGCAGCGGTGGCAGCTACAACGCCTGT
CGCCGCCGCTGTTCCTGCTCCTGCTGCGCCTCCTGTGGTGCTCTCCCAGG
CGGCGGGAGACACCGGTCCAACGCCGTCGCGTGTAGCAGGAGGTGGGGGC
GGTTTGATTGCCGCTGTCGTGGGGACGACGGGTCGCGGTGAAGACGTAGC
CATGAGCAGAAACGGCGACGACGCTGCTGCTGCTGCTGCCGTCATAACCA
CCACCAACGAGAGCGGCAGCACGCACGACTCCGTCGCCGGTGGCGTCAGC
GCCAGCGGCGGTGGAGAGGTCGACCGAAAGCAAGAGCTGCGCCGGCAGAA
GGTGGCCCGGTACCTGGCCAAGAAGAAGCGGCGGCGCTGGTCGAAGGCGT
CCTCGTACCAGAGCCGGCAGCGCGTGGCCAACTCGAGGCCGCGCCACAAG
GGACGGTTCCTGCCCCTCGAATCGGAGTTCCTGCCGATCGCGGAGCTGCA
GAAGCGGCAGCGGGCTATGATGAAGCAGATGCAGGAAAAGGCAGCGACGA
TGGCGGCAACCGCGGCAGAGTCGCATCAGGTGCCTCCTCCGATCCAGCAG
GAAGTAGCAGGAGGGGCTGCGTCGCTTTTGTCCCCGGGGGGCATGGCGGC
TGCTGCCGGTGTGTCCTTGAGCGGACGGCCGCTGTCTCCCGATTGCGTCC
ACCAGGTTGCCATATGA
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