mRNA_P-littoralis_Contig711.32.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig711.32.1
Unique NamemRNA_P-littoralis_Contig711.32.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig711.32.1 vs. uniprot
Match: A0A6H5JRT4_9PHAE (Peptidase A1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRT4_9PHAE)

HSP 1 Score: 308 bits (789), Expect = 2.480e-87
Identity = 171/279 (61.29%), Postives = 210/279 (75.27%), Query Frame = 3 
Query:   51 SAKDETYCSIEQELWTPCSADCMQERYLDDACEKGAEVRACHVGNLCSMSKAGLLLSVGLTVSIDVRDNGVSEDHSDLWLSWVEAAVAEAVAQVAPVAAGNVEAAVRCADPRAADIAAIGGGAGETFECQAQVEMHLTPKVDNVAADKVSQVVN-GTGGSP-FAASLSSALRSAARRHWLLTGVAVTVVAAEKVSMFVASNREAYLPPEGNRLQSVKS-GSGSXXXXXXXXFSSPEGAKLVLGLAGMVVAVIAALVFRVKYLRVPEEEGGEGWGRRPAG 878
            S+  ETYCSI+QELWT CS DC+QER+LDDAC K AE R C++GN+C  SK GLLLSVG+ + IDV D GVSE+HS LWL+W+   VA+AVA++  +AAGNVEA V C DPRAADIAA GG A  +F+C+A+VEMHLTPKVDNVAADKV+QV N GTG S  F+ASLS+AL+   R+ WLL+GV VT V+A  VS+F+ASN EAY P E NRLQS K  GS S         + P+G +L+L LAG+V AV+AAL+ RVK+LRVP E+GG     RP+G
Sbjct:  611 SSTHETYCSIDQELWTECSLDCLQERFLDDACGKEAEARGCNLGNVCPTSKTGLLLSVGVGLKIDVGDAGVSEEHSKLWLAWLGTTVADAVAELTSLAAGNVEATVTCTDPRAADIAAFGGAAAASFDCEAKVEMHLTPKVDNVAADKVTQVFNNGTGSSSSFSASLSAALQWTKRQRWLLSGVTVTAVSAGPVSVFIASNGEAYHPHESNRLQSAKPVGSVSGG-------AGPQGGRLMLTLAGVVFAVLAALMLRVKHLRVPGEDGG-----RPSG 877
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig711.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JRT4_9PHAE2.480e-8761.29Peptidase A1 domain-containing protein n=2 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig711contigP-littoralis_Contig711:113762..118354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LJA6
PFAMsAsp,TAXi_C,TAXi_N
Model size2637
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.19e-96
EggNOG OGsKOG1339@1|root,KOG1339@2759|Eukaryota
Ec32 ortholog descriptionaspartic protease PM5
Ec32 orthologEc-02_005360.1
Descriptionaspartic-type endopeptidase activity
Cds size1125
COG categoryM
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791486.6082516-UTR-P-littoralis_Contig711:113761..1152261680791486.6082516-UTR-P-littoralis_Contig711:113761..115226Pylaiella littoralis U1_48UTRP-littoralis_Contig711 113762..115226 -
1680791486.6533031-UTR-P-littoralis_Contig711:118307..1183541680791486.6533031-UTR-P-littoralis_Contig711:118307..118354Pylaiella littoralis U1_48UTRP-littoralis_Contig711 118308..118354 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791486.6204298-CDS-P-littoralis_Contig711:115226..1159521680791486.6204298-CDS-P-littoralis_Contig711:115226..115952Pylaiella littoralis U1_48CDSP-littoralis_Contig711 115227..115952 -
1680791486.632088-CDS-P-littoralis_Contig711:116587..1168721680791486.632088-CDS-P-littoralis_Contig711:116587..116872Pylaiella littoralis U1_48CDSP-littoralis_Contig711 116588..116872 -
1680791486.6433265-CDS-P-littoralis_Contig711:118193..1183071680791486.6433265-CDS-P-littoralis_Contig711:118193..118307Pylaiella littoralis U1_48CDSP-littoralis_Contig711 118194..118307 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig711.32.1prot_P-littoralis_Contig711.32.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig711 115227..118307 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig711.32.1

>prot_P-littoralis_Contig711.32.1 ID=prot_P-littoralis_Contig711.32.1|Name=mRNA_P-littoralis_Contig711.32.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=375bp
MSAKDETYCSIEQELWTPCSADCMQERYLDDACEKGAEVRACHVGNLCSM
SKAGLLLSVGLTVSIDVRDNGVSEDHSDLWLSWVEAAVAEAVAQVAPVAA
GNVEAAVRCADPRAADIAAIGGGAGETFECQAQVEMHLTPKVDNVAADKV
SQVVNGTGGSPFAASLSSALRSAARRHWLLTGVAVTVVAAEKVSMFVASN
REAYLPPEGNRLQSVKSGSGSSGGSGGGGFSSPEGAKLVLGLAGMVVAVI
AALVFRVKYLRVPEEEGGEGWGRRPAGGEYLRVSSAARETEMPERSSFAP
ESASASDSISASASAFVSASRGMPLRLSHTPTSAAVVGVDLDSAEGGSSG
GGGGGGSNSRSSVRRTVVVAIEDR*
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mRNA from alignment at P-littoralis_Contig711:113762..118354-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig711.32.1 ID=mRNA_P-littoralis_Contig711.32.1|Name=mRNA_P-littoralis_Contig711.32.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4593bp|location=Sequence derived from alignment at P-littoralis_Contig711:113762..118354- (Pylaiella littoralis U1_48)
GCGGCGACAAGGTTGAAGTGGTGGTGGTAAAGGAGGAGGAGGAGGAGATG
AGTGCAAAGGACGAGACGTACTGCTCCATCGAACAAGAGCTGTGGACCCC
GTGCTCGGCGGACTGCATGCAGGAGAGATATCTCGACGATGCTTGCGAGA
AGGGAGCCGAGGTGATGGGAGACGCATTACAGTATGTCTTGTGAAGTGTG
TGACTGGTGTAGGAAACCGTTCCTACCGTCTCTCTCGCTCGCCCACGTAC
GTATCATCCGTATGATACCACCAGGAGAGTTTTTTGTTCTCGAACTTTTT
TTTTTGTTCATTTTAACTTGTTCATCGTTCATATTATTCGATATGGTATG
TATGTACATACAATGTAGATATAGGTTAAGTGACCCCACCCCGAATCGGA
ACTCTTTCCTCAGTGTTTTTTTTGTATTTTATTCCCAGGCGATATTGTAC
TTAACCCTCTCTTTGTATAGAAGTCAACTCATCCATCCCACGGAGTCCTG
TTTCGGGTGGGTGTTATTTCGTTGACTTTCGTCGACTTTTCTCAGATCTA
TACGTGCGAGCGCCAGTCATGAATGTGATTGAAACAGAAAAAAAAAGGCG
CCTTGTCTTGTCTGAATTGAAAGTACCACATGATATGTTCTCCAGACGCC
AGCCAGTCCGTGCGCTGTATTTTGTATCATTCTGTACGAAGCACTTCGTA
CTCTTTATCATGTACGAAGTACTTCCGTACTCTGTGCCAGGTACATGTGT
GTGTGTGTGTGTTTTTTTTTTTTCATCCCTTTAATGGGACGCCACTCTAC
TCCTTTCGGGTAGGTAGACGCTCCAACTGGGGTCTGGTACACACTTCGTA
TATACTGAGTAATTCGAAGTATATGTTTTCGCAACATCATCACCGTCCTT
GGGCGACGGTATTCGCGCAACCACCTCTCCTCTCTCCTGCGGGCTCTTCG
CCGGCAAACCGGAGCGTAAAACTGTGGTCACACAGAAGGGTCCCTCTGTT
CCTTATCCCCCCCCATTCGCTCGCCCTCTGTGGCGTGAGATATCATATCG
TACGGGCGTCCGTTTTTTTTCGCCCGAAGGGTACGACGAGTCGTGGGGAG
GGATAACTGTTACAAGGGGAAGGATCGTCACGTGACGCTACTGCTGTCTC
CGACGCCTACATATATATGTATATAGGGGGGGGGGGGGGGGGCTGCCCTG
GCTTGGCTGCCGTGTGTATGTATGGCATCTATCATACCGTGCGAACCCTT
TCTTCGTACAGTACAGCCGCTTCTTCTTCTTCTTCTTGTTCTTTTTTGTC
TTCTTCACTAATTTTGTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT
TCTTTCTTTCTTCTCTTTCTCTCGTCTCGGTCTCTGTTCGCCAACCTTTT
TTCCCGCCCTCCCTCTCTCCCTTTACTTGCGCCCCCCCCCCTCCCCCCCC
CTCCCCCACCCCTGCCTTCCCTCGTCGTAAAGGTGAGAGCATGCCACGTG
GGAAACTTGTGCTCCATGAGCAAGGCGGGACTCCTGCTATCTGTGGGCCT
GACCGTCAGCATCGACGTTCGCGACAACGGCGTCTCTGAGGACCACTCCG
ACCTCTGGCTGAGCTGGGTCGAGGCCGCGGTCGCCGAAGCCGTCGCGCAG
GTCGCGCCGGTAGCGGCGGGAAACGTGGAGGCGGCCGTGAGGTGCGCGGA
CCCTCGTGCCGCGGACATCGCAGCCATCGGTGGCGGGGCGGGGGAGACGT
TCGAGTGCCAAGCTCAGGTATCATATCGTATGCATGTGATGTATGGATGT
AGGTGGTGCTTCGAAGTAGTGCTGTAGTATGAAACGTTACGTACGGCGAG
GCGAGCTTACGCCCGCCAGGACGGCTCACACACTCTCACGCGCCCTGAAA
GCCGGAAAAACAATACTTCGAAGTAATATATATATATTTTTGTATGTGAT
ATGATACGCCGTAGTACTCGTTTCTCTTGTTGGTGTGCTTTTTTGTCTGA
GGGCTCTGCGGGCTCTGAGTCTCGCGCGTCAGTGCCGAAACACGCGCCTT
TTTCTCAAGTGGTGCGCGGGTCGTCTGTTTGCTCTGGTGCCGCGGTGTTT
TTTCGGGGCGAGGTTGGCAACGGCTTTAATGGTGTACAGCAGTACTTCGT
GTAGAGAGAGCAGAGACGGTCCGATTCTGACCCCTTCTCGCCCTGAGAAC
GTCGTCCCCTCTTGTTCGTTTTTGTCTCCTACCTGCCTGCACGAAGTTTA
TGTCCTTGTCTTGTGTTTGATAAAACAAGAGGCACCATCACAACGAACGC
TCCCTCCCTCCCTCCCTCTGTCCTTCTTACCTTTCTTCCTTTCTTTCTTC
CCGTATCCCGGCGTGCTCACTGCTGCACTACGGACACACACAAAAAAAAA
AGGTGGAGATGCACCTGACCCCGAAGGTGGACAACGTGGCCGCGGACAAG
GTCAGCCAGGTCGTCAACGGCACCGGAGGGTCGCCCTTCGCGGCGTCCCT
CTCTTCCGCGCTGCGGTCGGCGGCGCGGCGGCACTGGCTCTTGACTGGAG
TGGCCGTGACGGTGGTCGCAGCGGAAAAGGTTTCCATGTTCGTCGCCAGC
AACAGGGAGGCGTACCTGCCCCCCGAAGGCAACCGCCTCCAGAGCGTGAA
ATCCGGGTCGGGCAGCAGCGGCGGGAGCGGCGGCGGCGGCTTCTCCTCTC
CGGAGGGCGCGAAGCTTGTGCTCGGGCTCGCCGGCATGGTGGTCGCCGTC
ATCGCCGCCCTCGTATTCCGAGTGAAGTACTTGAGGGTGCCGGAGGAGGA
AGGGGGTGAAGGATGGGGGAGACGACCGGCCGGGGGGGAGTACCTTCGGG
TCTCTAGCGCTGCTCGAGAGACGGAGATGCCGGAGCGCTCTTCTTTTGCT
CCCGAGTCTGCGTCTGCTTCCGATTCCATTTCTGCCTCTGCTTCTGCTTT
CGTTTCCGCGTCGCGTGGGATGCCGCTGCGGCTGTCTCACACACCTACTA
GTGCTGCTGTTGTTGGTGTAGATTTAGATTCTGCGGAAGGTGGCAGCAGC
GGCGGTGGTGGCGGCGGCGGAAGTAACAGCCGCTCTTCGGTACGAAGAAC
AGTAGTCGTGGCGATTGAGGACAGGTGACGGTGTTGTACAGCAGCGTAGT
AGGTGTATAGGGAGCAGGTAGTTGAGGTCGTCTTGTTTTTCGGTCCTGGG
GGTCCTCGGTGTGACGGTGTGTGTTGTTGTTGTCGTTGTTGATGTTGATG
TTGTTGTTGTTGCTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCGGCGGC
AGCGGCGGCTGGGGGAAAGGGGAGGAGTGTATTTACGGCAGCTTGACCTT
TTAGCTAGGGATATATCTGGTCATGATCCCTACCTCCCCCCCCCCTCTCT
GAAGAATCCCGCTAAGTTTTTGTCCATTCTGCAGATGTGTTGTAGTGGGG
GCGTTGGCGGGCGGCTGTCGGCTGGCTGAGACATGTCGAATCTGTGCGCG
AGGAAAGTCAGTGTATTTTGTTGCAAGCGGCGACCTTTGGAGTGAAGGAA
AAAAAATCAATCGAATCTCATACTTCAAGTAAACAATCAGGTGCTTTTAT
TTTTCCGTTTGAGACGAGTGGCTAGGGAGGGGAGGAAAGCCCAACCAAGC
GTTGCATTTTTTTTTCAGTTTCTTTGAAGGGATAGTCCTCTTACGCGGTG
CGGCGACTGTCGCGAAGTGGGTTCGATTCGATTGATTGCTTGCGGAGGGA
ACGGAGCCTATGGCGGGTTTCTCGAGACGACGTTGTCGATTTTCTTGCTC
CTATCTGATGCCGACGTTGTTGGGGAAGTGGTCCAGTATTTTGTGACTCT
CGGTGATGAGGGTGAAGGCATTCGCTCCTCCAATGCATGTCAAATGTCCA
GTTGGTTGCCTAGATCTTAGAGAACATCATGAAGCTGTGGACTATCCGAG
GTTTAACTGTGTAGGTTGTAGTTGTTATCGTCCTTTTTCTTGTTTTGTTT
TTTGGCGTTTCAGAGTGTTTGCCCTCGCTGTGCTTGCCCAGTTTGCCGGC
TACTCAGTTCGGGAGCAGGAAACGCGGGAAAGCGCAGGATCAAGCTATGA
TATGTCTCTGGTTGATTGTTAGGACATGTTGGCTGCCGCCGGCCTAGTTT
CGTGTGGAGGAGAGTTCGGGGTGTCGTGACACAGGTTGTAACGAGATAGA
TGATGAAACCCCCCACTTTCTGCTGTGCTACTGCGGGTGTTCCTGTGTTG
TTGGAAGCGTTTTATGCACTCTTTTGTTCGCAAAGCGAGGATGTAGTAGC
CTCGTTAACTGTTAGTGGACCGAGCGTTACATCTCGAGCGACCGCACACT
AGTCGGGTGCCATTCACAACACGTGACAGCCACGGTGGGTGGTAGCCGCT
TTAGTTGTTGTCGCGCAAGCCCTCATTGCGGCTAGTTTTTGCGTAGCGTG
GGGGGTTTCCGAAACATCTCTGGAGTCGTCGCGTTCGTTGTTCTTTTGAG
GATGCGCGCTGCACCAGACGGTGCTTTCGATAAGGGGACACATGCGACCA
TTCACCAGAAGCGTCAAGTGTAATTGCACTCTGGCACGGGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig711:113762..118354-

>mRNA_P-littoralis_Contig711.32.1 ID=mRNA_P-littoralis_Contig711.32.1|Name=mRNA_P-littoralis_Contig711.32.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1125bp|location=Sequence derived from alignment at P-littoralis_Contig711:113762..118354- (Pylaiella littoralis U1_48)
ATGAGTGCAAAGGACGAGACGTACTGCTCCATCGAACAAGAGCTGTGGAC
CCCGTGCTCGGCGGACTGCATGCAGGAGAGATATCTCGACGATGCTTGCG
AGAAGGGAGCCGAGGTGAGAGCATGCCACGTGGGAAACTTGTGCTCCATG
AGCAAGGCGGGACTCCTGCTATCTGTGGGCCTGACCGTCAGCATCGACGT
TCGCGACAACGGCGTCTCTGAGGACCACTCCGACCTCTGGCTGAGCTGGG
TCGAGGCCGCGGTCGCCGAAGCCGTCGCGCAGGTCGCGCCGGTAGCGGCG
GGAAACGTGGAGGCGGCCGTGAGGTGCGCGGACCCTCGTGCCGCGGACAT
CGCAGCCATCGGTGGCGGGGCGGGGGAGACGTTCGAGTGCCAAGCTCAGG
TGGAGATGCACCTGACCCCGAAGGTGGACAACGTGGCCGCGGACAAGGTC
AGCCAGGTCGTCAACGGCACCGGAGGGTCGCCCTTCGCGGCGTCCCTCTC
TTCCGCGCTGCGGTCGGCGGCGCGGCGGCACTGGCTCTTGACTGGAGTGG
CCGTGACGGTGGTCGCAGCGGAAAAGGTTTCCATGTTCGTCGCCAGCAAC
AGGGAGGCGTACCTGCCCCCCGAAGGCAACCGCCTCCAGAGCGTGAAATC
CGGGTCGGGCAGCAGCGGCGGGAGCGGCGGCGGCGGCTTCTCCTCTCCGG
AGGGCGCGAAGCTTGTGCTCGGGCTCGCCGGCATGGTGGTCGCCGTCATC
GCCGCCCTCGTATTCCGAGTGAAGTACTTGAGGGTGCCGGAGGAGGAAGG
GGGTGAAGGATGGGGGAGACGACCGGCCGGGGGGGAGTACCTTCGGGTCT
CTAGCGCTGCTCGAGAGACGGAGATGCCGGAGCGCTCTTCTTTTGCTCCC
GAGTCTGCGTCTGCTTCCGATTCCATTTCTGCCTCTGCTTCTGCTTTCGT
TTCCGCGTCGCGTGGGATGCCGCTGCGGCTGTCTCACACACCTACTAGTG
CTGCTGTTGTTGGTGTAGATTTAGATTCTGCGGAAGGTGGCAGCAGCGGC
GGTGGTGGCGGCGGCGGAAGTAACAGCCGCTCTTCGGTACGAAGAACAGT
AGTCGTGGCGATTGAGGACAGGTGA
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