prot_P-littoralis_Contig118.76.3 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig118.76.3
Unique Nameprot_P-littoralis_Contig118.76.3
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length296
Homology
BLAST of mRNA_P-littoralis_Contig118.76.3 vs. uniprot
Match: A0A6H5KMR3_9PHAE (Ribosomal RNA-processing protein 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMR3_9PHAE)

HSP 1 Score: 529 bits (1362), Expect = 8.580e-189
Identity = 265/295 (89.83%), Postives = 288/295 (97.63%), Query Frame = 0
Query:    1 MSVSDHMIVVPGQEITSVQGYLRGHGTYVEEGTDGGPPRLLACVAGVVERVNKLISVRPIKTRYIGEVGDLVVGRVSEVQSKRWSVEIGAHKSAVLLLSSVNLPGGQQRMKTYEDQLQMRSFFQEHDLISAEVQQVNADGGIALHTRSLKYGKLENGQLVSVPPVLIRRLKQHVVSLPNTGVDLILGTNGNVWISRTPPEEWKGKEEGDASGTGSMAPKAETLTRQRKQHAETETLGDARTNICRVRNAIVALRNVFHLVTPDSIMAVYLKSVSLGLTPKGMLSGEAVLELTSKE 295
            MS + H+IVVPGQEITSVQGYLRGHGTYVEEGTDGGPP+LLACVAGVVERVNKLISVRPIK+RYIGEVGDLVVGRV+EVQSKRWSVE+GAH+SAVL+LSSVNLPGGQQR++TYEDQLQMRSFFQEHDLISAEVQQVN+DGGIALHTRSLKYGKLENGQLVSVPPVLIRRLKQHVVSLP+TGVD+ILGTNGNVWISRTPPEEWKGKEEGDA+GTGS+APKAETLTRQRKQHAETET+G+ RTNICRVRNAIVALRNVFHLVTP+SIM+VY +SV++GL PK MLSGEAVL LT+KE
Sbjct:    1 MSAAGHIIVVPGQEITSVQGYLRGHGTYVEEGTDGGPPKLLACVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRVAEVQSKRWSVEVGAHRSAVLMLSSVNLPGGQQRIRTYEDQLQMRSFFQEHDLISAEVQQVNSDGGIALHTRSLKYGKLENGQLVSVPPVLIRRLKQHVVSLPDTGVDVILGTNGNVWISRTPPEEWKGKEEGDAAGTGSVAPKAETLTRQRKQHAETETIGEVRTNICRVRNAIVALRNVFHLVTPESIMSVYRRSVTMGLQPKDMLSGEAVLALTAKE 295          
BLAST of mRNA_P-littoralis_Contig118.76.3 vs. uniprot
Match: D8LIC3_ECTSI (Ribosomal RNA-processing protein 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIC3_ECTSI)

HSP 1 Score: 436 bits (1120), Expect = 2.430e-152
Identity = 218/237 (91.98%), Postives = 232/237 (97.89%), Query Frame = 0
Query:    1 MSVSDHMIVVPGQEITSVQGYLRGHGTYVEEGTDGGPPRLLACVAGVVERVNKLISVRPIKTRYIGEVGDLVVGRVSEVQSKRWSVEIGAHKSAVLLLSSVNLPGGQQRMKTYEDQLQMRSFFQEHDLISAEVQQVNADGGIALHTRSLKYGKLENGQLVSVPPVLIRRLKQHVVSLPNTGVDLILGTNGNVWISRTPPEEWKGKEEGDASGTGSMAPKAETLTRQRKQHAETETLG 237
            MS + H+IVVPGQEITSVQGYLRGHGTYVEEGTDGGPP+LLACVAGVVERVNKLISVRPIK+RYIGEVGDLVVGRV+EVQSKRWSVE+GAH+SAVL+LSSVNLPGGQQRM+TYEDQLQMRSFFQEHDLISAEVQQVN+DGGIALHTRSLKYGKLENGQLVSVPPVLIRRLKQHVVSLP+TGVD+ILGTNGNVWISRTPPEEWKGKEEGDA+GTGS+APKAETLTRQRKQHAET   G
Sbjct:    1 MSAAGHIIVVPGQEITSVQGYLRGHGTYVEEGTDGGPPKLLACVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRVTEVQSKRWSVEVGAHRSAVLMLSSVNLPGGQQRMRTYEDQLQMRSFFQEHDLISAEVQQVNSDGGIALHTRSLKYGKLENGQLVSVPPVLIRRLKQHVVSLPDTGVDVILGTNGNVWISRTPPEEWKGKEEGDAAGTGSVAPKAETLTRQRKQHAETVKSG 237          
BLAST of mRNA_P-littoralis_Contig118.76.3 vs. uniprot
Match: A0A836CMW4_9STRA (Ribosomal RNA-processing protein 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMW4_9STRA)

HSP 1 Score: 364 bits (935), Expect = 7.870e-124
Identity = 186/286 (65.03%), Postives = 224/286 (78.32%), Query Frame = 0
Query:    8 IVVPGQEITSVQGYLRGHGTYVEEGTDGGPPRLLACVAGVVERVNKLISVRPIKTRYIGEVGDLVVGRVSEVQSKRWSVEIGAHKSAVLLLSSVNLPGGQQRMKTYEDQLQMRSFFQEHDLISAEVQQVNADGGIALHTRSLKYGKLENGQLVSVPPVLIRRLKQHVVSL-PNTGVDLILGTNGNVWISRTPPEEWKG-KEEGDASGTGSMAPKAETLTRQRKQHAETETLGDARTNICRVRNAIVALRNVFHLVTPDSIMAVYLKSVSLGLTPKGMLSGEAVLEL 291
            IVVPGQ IT+  G+LRGHGTY++E  DGG P+L+ACVAGVVERVNKLISVRP+K+RYIGEVGDLVVGRV+EV  KRW V++G H+ A+L+LSSVNLPGG QR +TYEDQLQMR+FF+E+DLISAEVQQ+  DG I LHTRSLKYGKLENGQL+ VP VL++RLKQH ++L P  GVD++LGTNG VWI+R  P EW G   EG    T  +  KAETL + R+ HAET  L D R  ICRVRNA+V L++ F L+TPD+I AVY +SV  G+  K ML  EA+  L
Sbjct:    4 IVVPGQVITAEGGFLRGHGTYIQESEDGGEPQLIACVAGVVERVNKLISVRPVKSRYIGEVGDLVVGRVTEVGGKRWKVDVGGHQDAILMLSSVNLPGGAQRKRTYEDQLQMRTFFKENDLISAEVQQIQQDGSIVLHTRSLKYGKLENGQLLRVPQVLVKRLKQHFITLAPPIGVDVVLGTNGRVWITRAMPAEWTGGTSEGADMDTNVLTSKAETLMQLRRLHAETPILRDERERICRVRNAVVTLQHAFALITPDAIAAVYARSVEAGMAAKDMLQAEALASL 289          
BLAST of mRNA_P-littoralis_Contig118.76.3 vs. uniprot
Match: A0A1V9YN11_9STRA (Ribosomal RNA-processing protein 4 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YN11_9STRA)

HSP 1 Score: 282 bits (722), Expect = 1.180e-91
Identity = 151/266 (56.77%), Postives = 193/266 (72.56%), Query Frame = 0
Query:    4 SDHMIVVPGQEITSVQGYLRGHGTYVEEGTDGGPPRLLACVAGVVERVNKLISVRPIKTRYIGEVGDLVVGRVSEVQSKRWSVEIGAHKSAVLLLSSVNLPGGQQRMKTYEDQLQMRSFFQEHDLISAEVQQVNADGGIALHTRSLKYGKLENGQLVSVPPVLIRRLKQHVVSLPNTGVDLILGTNGNVWISRTPPEEWKGKEEGDASGTGSMAPKAETLTRQRKQHAETETLGDARTNICRVRNAIVALRNVFHLVTPDSIMAVY 269
            + +++V PGQ ITS  G+LRGHGTYVE G       LLA VAGVVE+VN+L+SVRP+ +RYIGEVGD+VVGR+SEV SKRW V+I   + AVL+LSSVNLPGG QR +TYEDQLQMRSFF+E +LISAEVQ+V  DG + LHTRSL+YGKLENGQL++V P L++RLKQH++ LP  G+D+ILG NG +W+SR+         E DA    +   +A+  T ++  HA T T  + R  I +V NAI  L   F  +TP+SIMA+Y
Sbjct:   27 AQYVVVTPGQVITSEPGFLRGHGTYVENG------ELLASVAGVVEKVNQLVSVRPLVSRYIGEVGDIVVGRISEVGSKRWKVDINGQQDAVLMLSSVNLPGGAQRRRTYEDQLQMRSFFEESELISAEVQEVRYDGTMWLHTRSLRYGKLENGQLITVQPSLVKRLKQHMLQLP-IGIDVILGCNGYIWVSRS--------IEHDAESLTTNESRADVWTERKATHAATVTSAEDRKKIAKVTNAIAQLNTRFQTITPESIMALY 277          
BLAST of mRNA_P-littoralis_Contig118.76.3 vs. uniprot
Match: A0A5D6Y3M5_9STRA (Ribosomal RNA-processing protein 4 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3M5_9STRA)

HSP 1 Score: 278 bits (710), Expect = 8.800e-90
Identity = 150/268 (55.97%), Postives = 195/268 (72.76%), Query Frame = 0
Query:    4 SDHMIVV-PGQEITSVQG-YLRGHGTYVEEGTDGGPPRLLACVAGVVERVNKLISVRPIKTRYIGEVGDLVVGRVSEVQSKRWSVEIGAHKSAVLLLSSVNLPGGQQRMKTYEDQLQMRSFFQEHDLISAEVQQVNADGGIALHTRSLKYGKLENGQLVSVPPVLIRRLKQHVVSLPNTGVDLILGTNGNVWISRTPPEEWKGKEEGDASGTGSMAPKAETLTRQRKQHAETETLGDARTNICRVRNAIVALRNVFHLVTPDSIMAVY 269
            + H++VV PGQ I++  G +LRGHGTY+          L+A VAGVVE+VN+LISVRP+ +RYIGEVGD+VVGRV+EV SKRW V++   + A L+LSSV LPGG QR +TYEDQLQMR+FF E+DLISAE+Q+V  DG +ALHTRSL+YGKLENGQ V V P L++R+KQH+V+LP  GVDLILGTNG +W++R+      G ++      G+M  + E L  +R+QHA T+   D R  I RV  A++ L   F L+TP+SIMAVY
Sbjct:   22 AQHVVVVTPGQVISTETGAFLRGHGTYMSNN------ELVASVAGVVEKVNQLISVRPLASRYIGEVGDIVVGRVTEVASKRWKVDVNGQQDASLMLSSVTLPGGAQRRRTYEDQLQMRNFFVENDLISAEIQEVRYDGSLALHTRSLRYGKLENGQFVRVAPSLVKRVKQHMVTLPGIGVDLILGTNGYLWVTRSLAA--LGGDDHALDDAGNMETRVEILMEKRQQHAATKMSVDDRRKIARVHRALLQLNERFRLITPESIMAVY 281          
BLAST of mRNA_P-littoralis_Contig118.76.3 vs. uniprot
Match: K3X3G6_GLOUD (Ribosomal RNA-processing protein 4 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X3G6_GLOUD)

HSP 1 Score: 278 bits (710), Expect = 1.630e-89
Identity = 147/265 (55.47%), Postives = 195/265 (73.58%), Query Frame = 0
Query:    7 MIVVPGQEITSVQG-YLRGHGTYVEEGTDGGPPRLLACVAGVVERVNKLISVRPIKTRYIGEVGDLVVGRVSEVQSKRWSVEIGAHKSAVLLLSSVNLPGGQQRMKTYEDQLQMRSFFQEHDLISAEVQQVNADGGIALHTRSLKYGKLENGQLVSVPPVLIRRLKQHVVSLPNTGVDLILGTNGNVWISRTPPEEWKGKEEG-DASGTGSMAPKAETLTRQRKQHAETETLGDARTNICRVRNAIVALRNVFHLVTPDSIMAVY 269
            ++V PGQ I++  G +LRGHGTY++  T+     L+A V GVVE+VN+LI+VRP+ +RYIGEVGD+VVGR++EV +KRW V++   + A L+LSSV LPGG QR +TYEDQLQMR+FF E+DLISAE+Q+V  DG ++LHTRSL+YGKLENGQ V V P L++R+KQH+V+LP  GVDLILGTNG +W+SR+      G +   D   TG+M  + E L  +R+QHA T+   D R  I RV  A++ L   F L+TP+SIMAVY
Sbjct:   39 VVVTPGQVISTETGAFLRGHGTYLDHQTN----ELIASVTGVVEKVNQLITVRPLVSRYIGEVGDIVVGRITEVANKRWKVDVNGQQDASLMLSSVTLPGGAQRRRTYEDQLQMRNFFVENDLISAEIQEVRYDGSLSLHTRSLRYGKLENGQFVQVAPHLVKRMKQHMVTLPGIGVDLILGTNGYLWLSRSFTALNGGDDSSMDDLSTGNMETRVEILMEKRQQHANTKMSVDDRKKIARVYRALLHLNEQFRLITPESIMAVY 299          
BLAST of mRNA_P-littoralis_Contig118.76.3 vs. uniprot
Match: A0A067C1K3_SAPPC (Ribosomal RNA-processing protein 4 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C1K3_SAPPC)

HSP 1 Score: 274 bits (700), Expect = 1.310e-88
Identity = 148/266 (55.64%), Postives = 189/266 (71.05%), Query Frame = 0
Query:    4 SDHMIVVPGQEITSVQGYLRGHGTYVEEGTDGGPPRLLACVAGVVERVNKLISVRPIKTRYIGEVGDLVVGRVSEVQSKRWSVEIGAHKSAVLLLSSVNLPGGQQRMKTYEDQLQMRSFFQEHDLISAEVQQVNADGGIALHTRSLKYGKLENGQLVSVPPVLIRRLKQHVVSLPNTGVDLILGTNGNVWISRTPPEEWKGKEEGDASGTGSMAPKAETLTRQRKQHAETETLGDARTNICRVRNAIVALRNVFHLVTPDSIMAVY 269
            + +++V PGQ ITS  G+LRGHGTYVE G       LLA VAGVVE+VN+L+SVRP+ +RYIGEVGD+VVGR+SEV SKRW V+I   + AVL+LSSVNLPGG QR +TYEDQLQMRSFF+E +LISAEVQ+V  DG + LHTRSL+YGKLENGQL++V P L++RLKQH++ LP  G+D+ILG NG +WI+R        + E DA    +   +A+  T ++  HA T T    R  I  V N +  L   F  +TP+SIM +Y
Sbjct:    6 AQYVVVTPGQVITSEPGFLRGHGTYVENG------ELLASVAGVVEKVNQLVSVRPLVSRYIGEVGDIVVGRISEVGSKRWKVDINGQQDAVLMLSSVNLPGGAQRRRTYEDQLQMRSFFEESELISAEVQEVRYDGTMWLHTRSLRYGKLENGQLIAVQPALVKRLKQHMLQLP-IGIDVILGCNGYIWIAR--------RIEHDAESLTTNESRADVWTERKATHAATPTDAADRKKIAAVYNVLSTLNAQFKTITPESIMELY 256          
BLAST of mRNA_P-littoralis_Contig118.76.3 vs. uniprot
Match: A0A485LWE7_9STRA (Ribosomal RNA-processing protein 4 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LWE7_9STRA)

HSP 1 Score: 274 bits (701), Expect = 1.960e-88
Identity = 151/263 (57.41%), Postives = 192/263 (73.00%), Query Frame = 0
Query:    4 SDHMIVVPGQEITSVQGYLRGHGTYVEEGTDGGPPRLLACVAGVVERVNKLISVRPIKTRYIGEVGDLVVGRVSEVQSKRWSVEIGAHKSAVLLLSSVNLPGGQQRMKTYEDQLQMRSFFQEHDLISAEVQQVNADGGIALHTRSLKYGKLENGQLVSVPPVLIRRLKQHVVSLPNTGVDLILGTNGNVWISRTPPEEWKGKEEGDASGTGSMAPKAETLTRQRKQHAETETLGDARTNICRVRNAIVALRNVFHLVTPDSIM 266
            + +++V PGQ ITS  G+LRGHGTYVE+G       LLA VAG+VE+VN+L+SVRP+ +RYIGEVGD+VVGR+SEV +KRW V+I   + AVL+LSSVNLP G QR +T EDQLQMRSFFQE +LISAEVQ+V  DG + LHTRSL+YGKLENGQL+ V P L++RLKQH+VSLPN GVD+ILG NG +WI R+  E     E  D +    +   A+  T +++ HA T T    R NI RV NA+  L + F L++P+SIM
Sbjct:   27 AQYVVVTPGQVITSEPGFLRGHGTYVEDG------ELLASVAGIVEKVNQLVSVRPLVSRYIGEVGDIVVGRISEVGNKRWKVDINGQQDAVLMLSSVNLPSGAQRRRTTEDQLQMRSFFQEGELISAEVQEVRYDGTMWLHTRSLRYGKLENGQLIQVQPSLVKRLKQHMVSLPNLGVDVILGCNGYLWIMRS-METTTTAETAD-NAVNELT--ADAWTARKQAHATTATDVVDRQNIARVYNALAKLNSDFRLISPESIM 279          
BLAST of mRNA_P-littoralis_Contig118.76.3 vs. uniprot
Match: A0A2D4BZY9_PYTIN (Ribosomal RNA-processing protein 4 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZY9_PYTIN)

HSP 1 Score: 273 bits (699), Expect = 5.630e-88
Identity = 146/267 (54.68%), Postives = 197/267 (73.78%), Query Frame = 0
Query:    7 MIVVPGQEITSVQG-YLRGHGTYVEEGTDGGPPRLLACVAGVVERVNKLISVRPIKTRYIGEVGDLVVGRVSEVQSKRWSVEIGAHKSAVLLLSSVNLPGGQQRMKTYEDQLQMRSFFQEHDLISAEVQQVNADGGIALHTRSLKYGKLENGQLVSVPPVLIRRLKQHVVSLPNTGVDLILGTNGNVWISRTPPEEWKGKEE---GDASGTGSMAPKAETLTRQRKQHAETETLGDARTNICRVRNAIVALRNVFHLVTPDSIMAVY 269
            ++V PG+ I++  G +LRGHGTY+          L+A VAGVVE+VN+LI+VRP+ +RYIGEVGD+VVGRV+EV +KRW V++   + A L+LSSV LPGG QR +TYEDQLQMRSFF E+DLISAE+Q+V  DG ++LHTRSL+YGKLENGQ V+V P L++R+KQH+V+LP  GVD+ILGTNG +WISR+      G ++    + +G GSM  + E LT +R++HA T+   + R  I RV  A++ L   F ++TPDSI+AVY
Sbjct:   29 VVVTPGEVISTETGAFLRGHGTYLSNN------ELVASVAGVVEKVNQLITVRPLVSRYIGEVGDIVVGRVTEVGNKRWKVDVNGQQDAGLMLSSVTLPGGAQRRRTYEDQLQMRSFFVENDLISAEIQEVRYDGSLSLHTRSLRYGKLENGQFVAVRPSLVKRMKQHMVTLPTLGVDVILGTNGYLWISRS-LSALDGVDDVASTEDTGPGSMETRVEVLTHKRQRHAATKMSHEDREKIARVYRAVLQLNEQFRVITPDSILAVY 288          
BLAST of mRNA_P-littoralis_Contig118.76.3 vs. uniprot
Match: A0A1V9YVZ5_9STRA (Ribosomal RNA-processing protein 4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YVZ5_9STRA)

HSP 1 Score: 273 bits (697), Expect = 6.940e-88
Identity = 148/264 (56.06%), Postives = 189/264 (71.59%), Query Frame = 0
Query:    6 HMIVVPGQEITSVQGYLRGHGTYVEEGTDGGPPRLLACVAGVVERVNKLISVRPIKTRYIGEVGDLVVGRVSEVQSKRWSVEIGAHKSAVLLLSSVNLPGGQQRMKTYEDQLQMRSFFQEHDLISAEVQQVNADGGIALHTRSLKYGKLENGQLVSVPPVLIRRLKQHVVSLPNTGVDLILGTNGNVWISRTPPEEWKGKEEGDASGTGSMAPKAETLTRQRKQHAETETLGDARTNICRVRNAIVALRNVFHLVTPDSIMAVY 269
            +++V PGQ I+S  G+LRGHGTYVE G       LLA VAGVVE+VN+L+SVRP+ +RYIGEVGD+VVGR+SEV SKRW V+I   + AVL+LSSVNLPGG QR +TYEDQLQMRSFF+E +LISAEVQ+V  DG + LHTRSL+YGKLENGQL+ V P L++RLKQH++ LP  G+D+ILG NG +WISR+         E D+    +   +A+  T ++  HA+T T    R  I +V N I  L   F  +TP+SIM +Y
Sbjct:   29 YVVVTPGQVISSEPGFLRGHGTYVENG------ELLASVAGVVEKVNQLVSVRPLVSRYIGEVGDIVVGRISEVGSKRWKVDINGQQDAVLMLSSVNLPGGAQRRRTYEDQLQMRSFFEECELISAEVQEVRYDGTMWLHTRSLRYGKLENGQLIVVQPALVKRLKQHMLQLP-IGIDVILGCNGYIWISRS--------IEHDSESLTTNESRADVWTERKATHAQTPTSAIDRKTIAKVYNVISTLNANFKTITPESIMEMY 277          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig118.76.3 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMR3_9PHAE8.580e-18989.83Ribosomal RNA-processing protein 4 n=1 Tax=Ectocar... [more]
D8LIC3_ECTSI2.430e-15291.98Ribosomal RNA-processing protein 4 n=1 Tax=Ectocar... [more]
A0A836CMW4_9STRA7.870e-12465.03Ribosomal RNA-processing protein 4 n=1 Tax=Tribone... [more]
A0A1V9YN11_9STRA1.180e-9156.77Ribosomal RNA-processing protein 4 n=1 Tax=Achlya ... [more]
A0A5D6Y3M5_9STRA8.800e-9055.97Ribosomal RNA-processing protein 4 n=1 Tax=Pythium... [more]
K3X3G6_GLOUD1.630e-8955.47Ribosomal RNA-processing protein 4 n=1 Tax=Globisp... [more]
A0A067C1K3_SAPPC1.310e-8855.64Ribosomal RNA-processing protein 4 n=2 Tax=Saprole... [more]
A0A485LWE7_9STRA1.960e-8857.41Ribosomal RNA-processing protein 4 n=1 Tax=Aphanom... [more]
A0A2D4BZY9_PYTIN5.630e-8854.68Ribosomal RNA-processing protein 4 n=1 Tax=Pythium... [more]
A0A1V9YVZ5_9STRA6.940e-8856.06Ribosomal RNA-processing protein 4 n=1 Tax=Thraust... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 67..147
e-value: 6.0E-4
score: 29.1
IPR004088K Homology domain, type 1PFAMPF15985KH_6coord: 157..197
e-value: 2.0E-11
score: 44.2
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 65..155
e-value: 6.5E-20
score: 72.9
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 62..154
NoneNo IPR availableGENE3D2.40.50.100coord: 7..64
e-value: 1.2E-22
score: 81.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 199..234
NoneNo IPR availablePANTHERPTHR21321:SF4EXOSOME COMPLEX COMPONENT RRP4coord: 6..287
NoneNo IPR availableCDDcd05789S1_Rrp4coord: 63..154
e-value: 2.37362E-36
score: 123.429
NoneNo IPR availableSUPERFAMILY110324Ribosomal L27 protein-likecoord: 8..60
IPR025721Exosome complex component, N-terminal domainPFAMPF14382ECR1_Ncoord: 8..51
e-value: 6.4E-13
score: 48.2
IPR026699Exosome complex RNA-binding protein 1/RRP40/RRP4PANTHERPTHR21321PNAS-3 RELATEDcoord: 6..287
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 156..291

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig118contigP-littoralis_Contig118:295512..301112 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig118.76.3mRNA_P-littoralis_Contig118.76.3Pylaiella littoralis U1_48mRNAP-littoralis_Contig118 294759..301644 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig118.76.3 ID=prot_P-littoralis_Contig118.76.3|Name=mRNA_P-littoralis_Contig118.76.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=296bp
MSVSDHMIVVPGQEITSVQGYLRGHGTYVEEGTDGGPPRLLACVAGVVER
VNKLISVRPIKTRYIGEVGDLVVGRVSEVQSKRWSVEIGAHKSAVLLLSS
VNLPGGQQRMKTYEDQLQMRSFFQEHDLISAEVQQVNADGGIALHTRSLK
YGKLENGQLVSVPPVLIRRLKQHVVSLPNTGVDLILGTNGNVWISRTPPE
EWKGKEEGDASGTGSMAPKAETLTRQRKQHAETETLGDARTNICRVRNAI
VALRNVFHLVTPDSIMAVYLKSVSLGLTPKGMLSGEAVLELTSKE*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022967S1_dom
IPR004088KH_dom_type_1
IPR012340NA-bd_OB-fold
IPR025721Exosome_cplx_N_dom
IPR026699Exosome_RNA_bind1/RRP40/RRP4
IPR036612KH_dom_type_1_sf