mRNA_P-littoralis_Contig71.126.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig71.126.1
Unique NamemRNA_P-littoralis_Contig71.126.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig71.126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig71contigP-littoralis_Contig71:477600..480564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1421
Hectar predicted targeting categoryother localisation
Exons5
Cds size534
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig71.126.1prot_P-littoralis_Contig71.126.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig71 477977..479296 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791483.3861241-UTR-P-littoralis_Contig71:477599..4779761680791483.3861241-UTR-P-littoralis_Contig71:477599..477976Pylaiella littoralis U1_48UTRP-littoralis_Contig71 477600..477976 +
1680791483.4351032-UTR-P-littoralis_Contig71:479296..4793221680791483.4351032-UTR-P-littoralis_Contig71:479296..479322Pylaiella littoralis U1_48UTRP-littoralis_Contig71 479297..479322 +
1680791483.4456563-UTR-P-littoralis_Contig71:479508..4796401680791483.4456563-UTR-P-littoralis_Contig71:479508..479640Pylaiella littoralis U1_48UTRP-littoralis_Contig71 479509..479640 +
1680791483.455891-UTR-P-littoralis_Contig71:480212..4805641680791483.455891-UTR-P-littoralis_Contig71:480212..480564Pylaiella littoralis U1_48UTRP-littoralis_Contig71 480213..480564 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791483.3992965-CDS-P-littoralis_Contig71:477976..4781901680791483.3992965-CDS-P-littoralis_Contig71:477976..478190Pylaiella littoralis U1_48CDSP-littoralis_Contig71 477977..478190 +
1680791483.4094832-CDS-P-littoralis_Contig71:478780..4789051680791483.4094832-CDS-P-littoralis_Contig71:478780..478905Pylaiella littoralis U1_48CDSP-littoralis_Contig71 478781..478905 +
1680791483.4217484-CDS-P-littoralis_Contig71:479101..4792961680791483.4217484-CDS-P-littoralis_Contig71:479101..479296Pylaiella littoralis U1_48CDSP-littoralis_Contig71 479102..479296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig71.126.1

>prot_P-littoralis_Contig71.126.1 ID=prot_P-littoralis_Contig71.126.1|Name=mRNA_P-littoralis_Contig71.126.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=178bp
MLEQNFAGVHGIVISRVRETAFIREASEGGVERMTQSMRESGYIKHDSLP
SVVIPGTTNIAANGVPEGAACVLQSAAEELQPRTIYDSFYFWCDFLTDLP
KPDYPHVKQTFERVGARSPARNAARQWVKAVEGTSTEARQALRENSNSSE
KSVDPSAMTVTLLSHEDFGKHLSTPVM*
back to top

mRNA from alignment at P-littoralis_Contig71:477600..480564+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig71.126.1 ID=mRNA_P-littoralis_Contig71.126.1|Name=mRNA_P-littoralis_Contig71.126.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2965bp|location=Sequence derived from alignment at P-littoralis_Contig71:477600..480564+ (Pylaiella littoralis U1_48)
CAAGTATTGGTTATGATTTCTAAAAACACCTTACACACTGCTGTTCTATA
TCCCACTATTGCACTCGCCGCCATATACCCCGCACTCCTTAACTTCGGGT
CAACAGGGAAAGCGTACGTCACCAGCTTTTAAGGACATTGGTAGCGATGG
CGGTCAGTACAGCTTAACGTTTGGAGTCAGTCCAGAGTGCGGAGTTTTTC
AGGATTCCTGTGGAATATGAACATTATCTTTTTGTTTTCGCGTTTGACCC
TTTGCGTTGTTCTTCATGTGAGCAGAGGAGCGTGGCTAAACTTGCTAGGT
CACCACGGGGAGAGATCACTCAGTTCCAGCGCAATGGTGGAGCCCAGACC
AAGGAAGGGCCCCGGGACTTCGGCGCAATGCTTGAGCAGAATTTTGCAGG
GGTGCATGGCATCGTCATCTCCCGTGTGAGAGAGACCGCTTTCATCCGAG
AGGCTTCGGAGGGAGGAGTGGAACGCATGACTCAATCAATGAGGGAAAGC
GGATATATCAAACACGACTCTTTGCCATCGGTGGTCATCCCGGGTACGAC
CAATATTGCAGCAAATGGTGTACCGGAAGGAGCGGCCTGCGGTGAGAAAT
GCTTCACTTTGGCTGTTTTTCAGTAAGGCCTACCGGTACTCAGCCGGAAT
AAACGTATGTCAACATCTCCTGAAAGTGAGGTTCACCACCGTGAGCCCTT
CGGGTATACAAAACTCATCGATGTTGAACATTACCGCCGTATGAATCCTG
CAAGAAGCATCAAGATGGGCGTGTTTTCAATGATGAGGCTTGTTCAGAGA
GCGCGAGCACGAACCACGTACGAAGGCGTAGTATTGATTCCTCGTTACAC
TGTTGCTGCATGTTTCCGGTATTTTTCACACGAAGCATGCTCCATACTGA
AAAAATACTTGAAGGTCATTTTGCCTTTCACAGACGCACCCAGCTTTCAA
CCAGCATATATGCACATCACGCCAGTCCATTCAACGAACCTCAACGTAAA
TATGAGGGACCCAAATATATAAAAACAACCAGAATTTGCCCGTCGAAACA
TATTAAGAACTACGGAGTATTAGTTAGGATCGGTAATCGTCCAGCTGCAA
AAGTCACGATAACCACCGACTCATTCAACACCTTTATTTGCGCGCTTTTG
TACATGACGTGTACAACTAATAGCGTCACAGTCCTCCAAAGTGCTGCGGA
AGAGCTCCAGCCTCGCACCATCTACGACAGCTTCTACTTCTGGTGTGATT
TCCTGACAGACTTGCCCAAGCCCGATTACCCGCATGTGAAGCAAACTTTC
GAGAGGGTGAGCGTCTGTTCCGCAGCCTGTTGTGGTGCTTTTACTTCTAT
CCACATGTCAAAGTGCGCCCTTACGCGTCACAGTATCGAAACGGCCTCCA
CGTCGACACCCTGCAACTGAATTTCATATAAATGGGCTGACTCGTACATC
AATAGCCAAAATCCTGTTTTTGTTTTCCGCTTCGTTCTCCGATAAACACA
AGGTTGGTGCTAGGTCCCCCGCAAGGAACGCCGCCAGACAGTGGGTAAAA
GCGGTGGAAGGAACATCGACAGAGGCTCGCCAAGCTCTACGCGAAAACTC
GAACTCCTCGGAGAAATCTGTCGATCCCTCTGCCATGACGGTGACGTTAC
TATCTCACGAAGACTTCGGAAAGCACCTGTCGACTCCGGTTATGTAGGAG
ATGTATCTTCAACTCTTCGCAAGGTATGTATTAAAATGAGGTCCAAATCT
ACCAGTTGATCCATTGAGACGCAAGGTTATTCCGCAAACGAATGTATATG
TTTCCTTTGTGCGGTTGTACCTCGCACCATGGAAGGTGTTGACAGTTGGT
TAAGCAGCACACCACACGTCCTGTCATCAGATTTCATTGCCGAATTGCCA
CGACATCAGGTGGCGGAAGCGAAGCGGACAAAAACGTTCCGATTTCAAGA
CAATCGAAGCACAAGCACGCAAGGGGACGGAGCTCGTGCAGCAGGTTCGA
GAGGTCGTCCCGCACGAAAAATGGACGCGGGAGCTCACCGAGTGAGACTT
GTTTTGATTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTTTGTGTT
GTCATCCCTTGAATTGGACGCCACTCTACACCTTGCGGGTAGGTAGACGC
TCCAACCGGGGTCACACAGGGGGAAGTCAACACAGGAGTTTTTTTTTTTT
TTTGTCCACTTTCCTCTGCGGTACTTGCCTTTTTGGTTGAGCTTTTATCG
CGAAAAAGGGGACAGCAATCCCTTTCCCTCATCGATGGTACGATCGAAGT
TCGTTTACTCACGAATTGATCGCTTTCTACTTTCACGCGCAATATGAGAT
AAAGCTCCAGATCGTGTTACTGCACTGGGATTCGAACTCACGCGTGAATG
TCAGAAGGTTGCGTGGATGAGCAACTGAACCACCGGGGCGACCGACATAT
ATCGTATACCAGAAAAAAAAAAAGTAACGACACATCCGTAGACCGCATGT
TGGAACACCGGGATAATAATGTAAGATTCACTTGAAGGTAGCGCATCGAG
TTAGCGCATTGTTCTCAATAGTTTACGGATTTTACAGCTTGTTGTATCCC
TGCTTACTCACAGGAAGGTTTCCAAGATCGCATTCAAGAACGGTAGCTGG
CACGACCTCTACGTGGAGCCCCACGACATCAAGTGCCGACGAAAGTTCGC
TGAACTTGCGGCAAAAGTACGCAAAAGGCTGCCAGAGTCCGTTACAGTCG
CGATCATGTCGAAGCCTGTCTCACGCTTGGAAAAGGTTATGATGTTTGTG
GATATTCATGCGTGGCTATGCAGGATGATGACGCCCATATATACGTAGGA
CAAAGAAGAGGGGTTTTATACGAAGCACTTTGCATGCCATCACCATCGGC
CGTTTCAGGACTCAACAATTTCCTCCCGAACAAACAATCTTCCGAGCCTC
TAAAGCATCTGTTAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig71:477600..480564+

>mRNA_P-littoralis_Contig71.126.1 ID=mRNA_P-littoralis_Contig71.126.1|Name=mRNA_P-littoralis_Contig71.126.1|organism=Pylaiella littoralis U1_48|type=CDS|length=534bp|location=Sequence derived from alignment at P-littoralis_Contig71:477600..480564+ (Pylaiella littoralis U1_48)
ATGCTTGAGCAGAATTTTGCAGGGGTGCATGGCATCGTCATCTCCCGTGT
GAGAGAGACCGCTTTCATCCGAGAGGCTTCGGAGGGAGGAGTGGAACGCA
TGACTCAATCAATGAGGGAAAGCGGATATATCAAACACGACTCTTTGCCA
TCGGTGGTCATCCCGGGTACGACCAATATTGCAGCAAATGGTGTACCGGA
AGGAGCGGCCTGCGTCCTCCAAAGTGCTGCGGAAGAGCTCCAGCCTCGCA
CCATCTACGACAGCTTCTACTTCTGGTGTGATTTCCTGACAGACTTGCCC
AAGCCCGATTACCCGCATGTGAAGCAAACTTTCGAGAGGGTTGGTGCTAG
GTCCCCCGCAAGGAACGCCGCCAGACAGTGGGTAAAAGCGGTGGAAGGAA
CATCGACAGAGGCTCGCCAAGCTCTACGCGAAAACTCGAACTCCTCGGAG
AAATCTGTCGATCCCTCTGCCATGACGGTGACGTTACTATCTCACGAAGA
CTTCGGAAAGCACCTGTCGACTCCGGTTATGTAG
back to top