mRNA_P-littoralis_Contig71.122.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig71.122.1
Unique NamemRNA_P-littoralis_Contig71.122.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig71.122.1 vs. uniprot
Match: A0A6H5JCW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW3_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.990e-35
Identity = 91/212 (42.92%), Postives = 119/212 (56.13%), Query Frame = 1 
Query:  406 THMKIDQIFSRLALGVKGLNVFTRSEQVAIIKASYKAVPMNVSTLRNEGNFKDFLMGRYKMIPSITRWWAFLLLRS-EGNVGVCVKEFMRSRDWSGPTRDGKSRAGTPPHSMFIGPPPNLRGDIPMYELKPVMKETIRFIGMRYEASRERLQSAYPGDSSRWQEITEEQDGDIALLGVSGKLPFDLPRDLLPLGDDNLSESGGGGENNIPEK 1038
            THMKIDQIFSR + G+KG N+FTR++   +++ASY  VP+  STL NEGNF   L GR   +P IT + AF + +  +G V V VK  M   +  G  R+G      PPH +FIG PP ++ D P YELK V  E IR +  RY AS E L + YP  + R      EQ   +  L  +G   FDLP   LP  D   +E+G    N+I E+
Sbjct:   59 THMKIDQIFSRFSRGIKGKNIFTRTQLAEVLQASYTEVPVFCSTLGNEGNFNGLLQGRVNRVPDITTYRAFRVEKGGDGRVKVRVKHHMHGTECKGIGRNGDVDPNAPPHDLFIGHPPRIQ-DAPPYELKEVSDEIIRKVEQRYLASHESLAATYPLGAQR---AKNEQMDSVRRLKETGLREFDLPVHWLP-DDYGGAEAGVRNGNDIEEE 265
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BLAST of mRNA_P-littoralis_Contig71.122.1 vs. uniprot
Match: A0A6H5JAR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAR9_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.760e-16
Identity = 59/165 (35.76%), Postives = 86/165 (52.12%), Query Frame = 1 
Query:  406 THMKIDQIFSRLALGVKGLNVFTRSEQVAIIKASYKAVPMNVSTLRNEGNFKDFLMGRYKM----IPSITRWWAFLLLRSEGNVGVCVKEFMRSRDWSGPTRDGKSRAGTPPHSMFIGPPPNLRGDIPMY----ELKPVMKETIRFIGMRYEASRERLQSAYPGD 876
            TH+KIDQ+FSRL +G  G ++FT+ +   + + SYK +P++V  L N GN K   +   K+    I +I  + AF + +  G V V VK FM S  W G T  G +R    P+ +F    P+    +P      +LK      I  I  RY A+R RL++AY  D
Sbjct:   83 THIKIDQVFSRLFVGTLGRSIFTKIQLGELFRESYKELPVHVGILTNLGNLKGLYLADNKLNLRKIRNIATFRAFRVGKVAGEVSVWVKRFMHSDAWLGLTATGGARVDAIPYRLFRFAAPSFDNVLPFNLLPCKLKTADPTVIALIEKRYIATRPRLEAAYALD 247
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BLAST of mRNA_P-littoralis_Contig71.122.1 vs. uniprot
Match: A0A6H5KK38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK38_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 3.840e-10
Identity = 40/75 (53.33%), Postives = 47/75 (62.67%), Query Frame = 3 
Query:  213 SVWLALARLFDMSGGP-TALYIDVLLLSLDNCVGENKNNIVMAFLGCWVLMGVVRRVEVNFMQVGHTHENRSDFF 434
            ++WLAL RL +M   P    +I  L L LDNCVGENKNNIVMAF+G  V  GV+   EV F+ VGHTH      F
Sbjct:  244 ALWLALKRLSEMWNKPGERFHIKRLHLQLDNCVGENKNNIVMAFIGGLVAAGVIGSAEVCFLIVGHTHTKTDQVF 318
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BLAST of mRNA_P-littoralis_Contig71.122.1 vs. uniprot
Match: A0A6H5KN27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN27_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 4.030e-10
Identity = 39/68 (57.35%), Postives = 45/68 (66.18%), Query Frame = 3 
Query:  213 SVWLALARLFDMSGGP-TALYIDVLLLSLDNCVGENKNNIVMAFLGCWVLMGVVRRVEVNFMQVGHTH 413
            ++WLAL RL  M   P    YI  L L LDNCVGENKNNIV+AF+G  V  GV+   EV F+ VGHTH
Sbjct:   17 ALWLALKRLSAMWTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTH 84
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BLAST of mRNA_P-littoralis_Contig71.122.1 vs. uniprot
Match: A0A6H5KA02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA02_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.100e-9
Identity = 39/68 (57.35%), Postives = 45/68 (66.18%), Query Frame = 3 
Query:  213 SVWLALARLFDMSGGP-TALYIDVLLLSLDNCVGENKNNIVMAFLGCWVLMGVVRRVEVNFMQVGHTH 413
            ++WLAL RL  M   P    YI  L L LDNCVGENKNNIV+AF+G  V  GV+   EV F+ VGHTH
Sbjct:  129 ALWLALKRLSAMGTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTH 196
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BLAST of mRNA_P-littoralis_Contig71.122.1 vs. uniprot
Match: A0A6H5KAY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY2_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.040e-9
Identity = 39/68 (57.35%), Postives = 45/68 (66.18%), Query Frame = 3 
Query:  213 SVWLALARLFDMSGGP-TALYIDVLLLSLDNCVGENKNNIVMAFLGCWVLMGVVRRVEVNFMQVGHTH 413
            ++WLAL RL  M   P    YI  L L LDNCVGENKNNIV+AF+G  V  GV+   EV F+ VGHTH
Sbjct:   17 ALWLALKRLSAMWTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTH 84
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BLAST of mRNA_P-littoralis_Contig71.122.1 vs. uniprot
Match: A0A6H5KUA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUA0_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.550e-7
Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 3 
Query:  270 YIDVLLLSLDNCVGENKNNIVMAFLGCWVLMGVVRRVEVNFMQVGHTH 413
            YI    + +DNCV ENKN+IV+ +LG  V  G++  VEV FM VGHTH
Sbjct:   10 YIYRFTIQVDNCVSENKNHIVIGYLGSLVAQGIIGEVEVQFMPVGHTH 57
[Close]
BLAST of mRNA_P-littoralis_Contig71.122.1 vs. uniprot
Match: A0A6H5JTH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTH9_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 5.680e-7
Identity = 37/67 (55.22%), Postives = 42/67 (62.69%), Query Frame = 3 
Query:  213 SVWLALARLFDMSGGP-TALYIDVLLLSLDNCVGENKNNIVMAFLGCWVLMGVVRRVEVNFMQVGHT 410
            ++WLAL RL  M   P    YI  L L L NCVGE KNNIV+AF+G  V  GVV   EV F+ VGHT
Sbjct:  291 ALWLALKRLSAMWAKPGQRFYIKRLHLQLHNCVGEKKNNIVLAFIGGLVAAGVVVSAEVCFLIVGHT 357
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BLAST of mRNA_P-littoralis_Contig71.122.1 vs. uniprot
Match: UPI001CF50A8D (uncharacterized protein LOC122962893 n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF50A8D)

HSP 1 Score: 57.8 bits (138), Expect = 3.200e-5
Identity = 26/54 (48.15%), Postives = 35/54 (64.81%), Query Frame = 3 
Query:  279 VLLLSLDNCVGENKNNIVMAFLGCWVLMGVVRRVEVNFMQVGHTHENRSDFFQV 440
            VL L LDNCV ENKN  ++  L   V +G+  ++ +NF+ VGHTHE+   FF V
Sbjct:  150 VLYLQLDNCVKENKNQFILWLLAYLVELGIFEKIRLNFLPVGHTHEDIDAFFGV 203
[Close]
BLAST of mRNA_P-littoralis_Contig71.122.1 vs. uniprot
Match: UPI00077A4332 (uncharacterized protein LOC107348605 isoform X1 n=2 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A4332)

HSP 1 Score: 57.8 bits (138), Expect = 3.370e-5
Identity = 26/54 (48.15%), Postives = 35/54 (64.81%), Query Frame = 3 
Query:  279 VLLLSLDNCVGENKNNIVMAFLGCWVLMGVVRRVEVNFMQVGHTHENRSDFFQV 440
            VL L LDNCV ENKN  ++  L   V +G+  ++ +NF+ VGHTHE+   FF V
Sbjct:  367 VLYLQLDNCVKENKNQFILWLLAYLVELGIFEKIRLNFLPVGHTHEDIDAFFGV 420
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig71.122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JCW3_9PHAE1.990e-3542.92Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAR9_9PHAE2.760e-1635.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK38_9PHAE3.840e-1053.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN27_9PHAE4.030e-1057.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA02_9PHAE1.100e-957.35Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAY2_9PHAE2.040e-957.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUA0_9PHAE1.550e-754.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTH9_9PHAE5.680e-755.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001CF50A8D3.200e-548.15uncharacterized protein LOC122962893 n=1 Tax=Acrop... [more]
UPI00077A43323.370e-548.15uncharacterized protein LOC107348605 isoform X1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig71contigP-littoralis_Contig71:465759..467780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1507
Hectar predicted targeting categoryother localisation
Exons3
Cds size954
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791483.2334807-UTR-P-littoralis_Contig71:465758..4659001680791483.2334807-UTR-P-littoralis_Contig71:465758..465900Pylaiella littoralis U1_48UTRP-littoralis_Contig71 465759..465900 -
1680791483.2805421-UTR-P-littoralis_Contig71:467369..4677801680791483.2805421-UTR-P-littoralis_Contig71:467369..467780Pylaiella littoralis U1_48UTRP-littoralis_Contig71 467370..467780 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791483.2452936-CDS-P-littoralis_Contig71:465900..4663911680791483.2452936-CDS-P-littoralis_Contig71:465900..466391Pylaiella littoralis U1_48CDSP-littoralis_Contig71 465901..466391 -
1680791483.258861-CDS-P-littoralis_Contig71:466746..4671831680791483.258861-CDS-P-littoralis_Contig71:466746..467183Pylaiella littoralis U1_48CDSP-littoralis_Contig71 466747..467183 -
1680791483.2694654-CDS-P-littoralis_Contig71:467343..4673691680791483.2694654-CDS-P-littoralis_Contig71:467343..467369Pylaiella littoralis U1_48CDSP-littoralis_Contig71 467344..467369 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig71.122.1prot_P-littoralis_Contig71.122.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig71 465901..467369 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig71.122.1

>prot_P-littoralis_Contig71.122.1 ID=prot_P-littoralis_Contig71.122.1|Name=mRNA_P-littoralis_Contig71.122.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=318bp
MKIDQIFSRLALGVKGLNVFTRSEQVAIIKASYKAVPMNVSTLRNEGNFK
DFLMGRYKMIPSITRWWAFLLLRSEGNVGVCVKEFMRSRDWSGPTRDGKS
RAGTPPHSMFIGPPPNLRGDIPMYELKPVMKETIRFIGMRYEASRERLQS
AYPGDSSRWQEITEEQDGDIALLGVSGKLPFDLPRDLLPLGDDNLSESGG
GGENNIPEKSQVYKLTICLMSSLPTKALHPDHTRDTGLENHPSSRIDFFL
ESSTLSWAESNPKAISVSLLPYSLQRKEANIDTRILLLFGPCEALVVGLV
DARGETSMENTFIAVPC*
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mRNA from alignment at P-littoralis_Contig71:465759..467780-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig71.122.1 ID=mRNA_P-littoralis_Contig71.122.1|Name=mRNA_P-littoralis_Contig71.122.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2022bp|location=Sequence derived from alignment at P-littoralis_Contig71:465759..467780- (Pylaiella littoralis U1_48)
GAGCGAAAAGCAAAAGCTCATGGCCTGTTCCGTGGAAGGTATACTTCTCG
ACATCTATCAAGTTCCCCAGACCCTTGGGACAGGTATGAAAGTCGGTGCT
TTCTCCTCTATAGTTCTCAACTAACGAACTGCGTACAGCAGCCTGTACAG
GTCATTTCTGCAAAGTCCTGACATGAAATTGCAAGAAATCCTTATCTACT
CTCTAATTTCACTCGGTGTGGCTCGCGTTGGCTCGACTGTTTGACATGTC
CGGCGGCCCCACGGCACTGTACATCGACGTGTTGCTTCTATCCCTGGATA
ATTGTGTCGGCGAAAACAAAAACAACATTGTCATGGCCTTCCTGGGATGC
TGGGTGCTGATGGGGGTCGTTCGGAGAGTGGAAGTAAACTTCATGCAAGT
TGGACACACACATGAAAATCGATCAGATTTTTTCCAGGTACGGATAGATC
CCTGATCGAAATTGATAACCTTTAGTGCTGTTTCGTTGCTGTCAAGCCAC
ATCAAACCTGTAGGGTAGATACCACACGTTTGCTTTCATCCGATTCCTTC
GAGAGCCCTCCTCGAGTTGACTCTCTTCCGTTCGCTCGGTGTGGCAGGTT
GGCCCTGGGTGTGAAAGGTCTCAACGTTTTCACGAGGAGTGAGCAGGTGG
CTATAATCAAAGCTTCGTATAAAGCAGTTCCCATGAACGTCTCCACGCTT
CGGAACGAGGGTAATTTCAAGGATTTTCTCATGGGGCGGTACAAAATGAT
TCCAAGCATTACACGATGGTGGGCATTCCTGTTGCTGCGTTCGGAAGGCA
ATGTTGGCGTCTGCGTGAAAGAATTCATGCGTTCACGCGATTGGTCGGGG
CCGACTCGCGACGGAAAGTCCAGGGCAGGCACTCCTCCGCACAGCATGTT
CATCGGGCCGCCGCCCAATCTTCGTGGCGACATCCCCATGTACGAGCTGA
AACCTGTCATGAAAGAAACGATTCGATTCATAGGCATGCGGTATGAAGCC
TCCCGAGAACGCCTTCAGTCAGCATACCCAGGTGGTAAGTGTTGAAGTTT
TAACATTTAGTAGGCTACCCCCCTGTGCCCAATCATGTAATCATTTCTTT
CGAAATAAAGATCTATGAAATCAAGTAAACTTGTCGCCCAAAACATGGGG
ACGCGTTCGCTTGCTTATAGAATGCGTTTGTGAATTGAGCGATTAGCGAG
GTAAAAGTTTAGCTGTTCGGAGTCACGTGATATTCCAATTTACGAATGAC
AAAATGGCGACCCAATGTGGCGACATTACGCGGTAAGAGCGTTAATATTA
CTCTGACTAGGAGTTCCGTAGATTCGCTCTCTGTAAGAGAGGCCGTCCTC
TCTGTAATGAACGATACATTCTATTATGCTTGTCGACAGATTCTAGCCGG
TGGCAGGAGATTACCGAAGAGCAGGACGGCGATATAGCTCTACTTGGCGT
GTCTGGCAAGCTCCCGTTTGACCTGCCCCGAGACTTGCTGCCGCTCGGCG
ATGACAACCTCTCTGAATCGGGGGGCGGGGGCGAGAACAACATCCCGGAA
AAAAGCCAAGTCTATAAACTCACAATATGCCTGATGTCATCGCTCCCCAC
AAAAGCCCTCCATCCCGACCATACAAGAGACACCGGTCTGGAAAATCACC
CCAGCAGCAGAATAGACTTCTTTCTTGAAAGTTCAACCCTGTCTTGGGCA
GAGAGTAACCCAAAGGCAATATCTGTATCGCTTCTGCCTTATAGTTTGCA
AAGGAAGGAGGCAAACATAGATACCCGGATATTGCTTTTGTTTGGGCCTT
GTGAGGCCCTGGTTGTGGGCTTAGTCGATGCTAGAGGGGAAACCAGCATG
GAGAATACATTTATCGCGGTACCCTGCTAGTCAACGACGAGCTTCGCTGT
TGTGGCAGTTGGAAATGTTTCTTGAAGTCATTTCTAAGATTTCTCGTTCT
TGATTATAAATCGGTTCTTTTTTAAAGTGATCGGCTGTTATGGAGAGAAC
GCGAGAGCCGCAGCACGGAGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig71:465759..467780-

>mRNA_P-littoralis_Contig71.122.1 ID=mRNA_P-littoralis_Contig71.122.1|Name=mRNA_P-littoralis_Contig71.122.1|organism=Pylaiella littoralis U1_48|type=CDS|length=954bp|location=Sequence derived from alignment at P-littoralis_Contig71:465759..467780- (Pylaiella littoralis U1_48)
ATGAAAATCGATCAGATTTTTTCCAGGTTGGCCCTGGGTGTGAAAGGTCT
CAACGTTTTCACGAGGAGTGAGCAGGTGGCTATAATCAAAGCTTCGTATA
AAGCAGTTCCCATGAACGTCTCCACGCTTCGGAACGAGGGTAATTTCAAG
GATTTTCTCATGGGGCGGTACAAAATGATTCCAAGCATTACACGATGGTG
GGCATTCCTGTTGCTGCGTTCGGAAGGCAATGTTGGCGTCTGCGTGAAAG
AATTCATGCGTTCACGCGATTGGTCGGGGCCGACTCGCGACGGAAAGTCC
AGGGCAGGCACTCCTCCGCACAGCATGTTCATCGGGCCGCCGCCCAATCT
TCGTGGCGACATCCCCATGTACGAGCTGAAACCTGTCATGAAAGAAACGA
TTCGATTCATAGGCATGCGGTATGAAGCCTCCCGAGAACGCCTTCAGTCA
GCATACCCAGGTGATTCTAGCCGGTGGCAGGAGATTACCGAAGAGCAGGA
CGGCGATATAGCTCTACTTGGCGTGTCTGGCAAGCTCCCGTTTGACCTGC
CCCGAGACTTGCTGCCGCTCGGCGATGACAACCTCTCTGAATCGGGGGGC
GGGGGCGAGAACAACATCCCGGAAAAAAGCCAAGTCTATAAACTCACAAT
ATGCCTGATGTCATCGCTCCCCACAAAAGCCCTCCATCCCGACCATACAA
GAGACACCGGTCTGGAAAATCACCCCAGCAGCAGAATAGACTTCTTTCTT
GAAAGTTCAACCCTGTCTTGGGCAGAGAGTAACCCAAAGGCAATATCTGT
ATCGCTTCTGCCTTATAGTTTGCAAAGGAAGGAGGCAAACATAGATACCC
GGATATTGCTTTTGTTTGGGCCTTGTGAGGCCCTGGTTGTGGGCTTAGTC
GATGCTAGAGGGGAAACCAGCATGGAGAATACATTTATCGCGGTACCCTG
CTAG
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