mRNA_P-littoralis_Contig71.86.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig71.86.3
Unique NamemRNA_P-littoralis_Contig71.86.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig71.86.3 vs. uniprot
Match: D8LL26_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL26_ECTSI)

HSP 1 Score: 494 bits (1272), Expect = 2.830e-168
Identity = 267/381 (70.08%), Postives = 306/381 (80.31%), Query Frame = 1 
Query:  619 DINEVG-LQHQSISETTGVGAPAGIYEFGAEDFRFDLERDDVGLFPAPEMHERRD-RTRKPLKLPEFGHALTACKDWWAEEFLFRGFGIGFAKPLFRGLLLRPDFGLGVRLPVTLHFRSWESREALPSIALSFFFLWPPAVQVSQAMSYPAELLQELATTAARKIAVPSKEAVQVRRRKESVQRLGVSFGVRYSATYGVQYWLAPYFFLLPGVRIIWTLYQSMMTMVLSSLALVQRSDQSGLGGENGKDETQEALWVVALRSWAAAKTSGLGYSLYYSGNRLGGAAYVNFMPFFIPSFSLNRFTSTESSNVQESGAQH--QVVDSNVQQQAEEESRAQEVVDQGVALGSNHPP-SVELHETNAEENGGPSKRGGALQAFSA 1746
            D+NEVG LQ +S  +TTG+  PAG YEFGAEDFRFDL R+DV LFPAP+++ER   R RKPLKLPE G+ALTACK WWAEEF FRGFGIGF KP+FRGLLLRPD G+GVRLPVTLHFRSWESREALPS+ALS F LWPPAVQVSQAMSYPAELLQELATTAARKI VPSKEA+QVRRRKE+VQRLGVS GVRYS+TYG Q+WL+PYFFLLPGVR++WTLYQSMMT++LSSLAL+QRSD SGL  ENG+ E QEALWVVALRSWAA KTSGLGY+LY SGNRLGGAAYVNFMPFF+P+F     TS +SS V++ GA+   Q VD +V    +E++  +E V   V +G        E + T AE+     + G  LQ  SA
Sbjct:    6 DLNEVGGLQLESPPDTTGIAFPAGTYEFGAEDFRFDLGREDVDLFPAPDIYERGSYRARKPLKLPELGNALTACKGWWAEEFTFRGFGIGFVKPVFRGLLLRPDLGVGVRLPVTLHFRSWESREALPSVALSLFVLWPPAVQVSQAMSYPAELLQELATTAARKIVVPSKEAIQVRRRKEAVQRLGVSIGVRYSSTYGFQWWLSPYFFLLPGVRVLWTLYQSMMTLLLSSLALMQRSDASGLDRENGRAENQEALWVVALRSWAAEKTSGLGYALYLSGNRLGGAAYVNFMPFFLPTF--RAATSRDSSGVKDPGAEQREQGVD-DVAAPVQEDAGTREAVPSEVFVGVTPDGCGAESNATEAEQQ----REGAVLQPISA 379
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BLAST of mRNA_P-littoralis_Contig71.86.3 vs. uniprot
Match: A0A6H5KR13_9PHAE (Peroxin/Ferlin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KR13_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 2.500e-57
Identity = 113/189 (59.79%), Postives = 131/189 (69.31%), Query Frame = 1 
Query:    1 MTACSALLFRSALVAILAHAVGGNEFR-----DGSSATAVSPPRSQAFES-----APESRSTSSRVAAD--NRFEAGADVDTGPDPFFADLEVAVPQQENVDLPRSSRKQMIF-SVEVYEVQSGGLGRKWREARMGWTYKDGSSALPPAMVKVPDDWDWASEWKIDGSGGRDVGGWEYSKDLTKFNLSR 528
            MTAC ALLFRSALVAIL HAVGGNEFR     DG +A +                AP   ++S  VAAD  +RFEA ADV TGPDPFFADLE  V +Q++ ++     K+++   VEVYEV+SGGLGR+WR++R GWTYKDGSSALPP  V  PD+W WASEWKIDGSGGRD  GWEYSK L KFN  R
Sbjct:    1 MTACKALLFRSALVAILVHAVGGNEFRTALRNDGYTAASAXXXXXXXXXXXXXXXAPVMLASSRAVAADRRSRFEAEADVKTGPDPFFADLEFDVARQDDKEIREPPPKKLLLHKVEVYEVESGGLGRRWRQSRTGWTYKDGSSALPPRQVLCPDEWTWASEWKIDGSGGRDEAGWEYSKSLMKFNSFR 189
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig71.86.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LL26_ECTSI2.830e-16870.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KR13_9PHAE2.500e-5759.79Peroxin/Ferlin domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig71contigP-littoralis_Contig71:318766..322679 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog37682.EMT19102
PFAMsC2,Chorein_N,Pex24p,SHR-BD,VPS13,VPS13_C,VPS13_mid_rpt,Vps62
Model size1932
Max annot lvl35493|Streptophyta
KEGG koko:K19525
Hectar predicted targeting categorysignal peptide
Exons6
Evalue1.87e-05
EggNOG OGsCOG5043@1|root,KOG1809@2759|Eukaryota,37IJB@33090|Viridiplantae,3GAN0@35493|Streptophyta,3KV4P@4447|Liliopsida,3IGHR@38820|Poales
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_000860.1
DescriptionVacuolar protein sorting-associated protein 62
Cds size1749
COG categoryU
BRITEko00000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig71.86.3prot_P-littoralis_Contig71.86.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig71 318949..322679 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791482.4417305-UTR-P-littoralis_Contig71:318765..3189481680791482.4417305-UTR-P-littoralis_Contig71:318765..318948Pylaiella littoralis U1_48UTRP-littoralis_Contig71 318766..318948 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791482.4547198-CDS-P-littoralis_Contig71:318948..3193781680791482.4547198-CDS-P-littoralis_Contig71:318948..319378Pylaiella littoralis U1_48CDSP-littoralis_Contig71 318949..319378 -
1680791482.4674447-CDS-P-littoralis_Contig71:319792..3199771680791482.4674447-CDS-P-littoralis_Contig71:319792..319977Pylaiella littoralis U1_48CDSP-littoralis_Contig71 319793..319977 -
1680791482.4834306-CDS-P-littoralis_Contig71:320311..3208271680791482.4834306-CDS-P-littoralis_Contig71:320311..320827Pylaiella littoralis U1_48CDSP-littoralis_Contig71 320312..320827 -
1680791482.4938748-CDS-P-littoralis_Contig71:321016..3211051680791482.4938748-CDS-P-littoralis_Contig71:321016..321105Pylaiella littoralis U1_48CDSP-littoralis_Contig71 321017..321105 -
1680791482.5090415-CDS-P-littoralis_Contig71:321535..3216831680791482.5090415-CDS-P-littoralis_Contig71:321535..321683Pylaiella littoralis U1_48CDSP-littoralis_Contig71 321536..321683 -
1680791482.5210564-CDS-P-littoralis_Contig71:322298..3226791680791482.5210564-CDS-P-littoralis_Contig71:322298..322679Pylaiella littoralis U1_48CDSP-littoralis_Contig71 322299..322679 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig71.86.3

>prot_P-littoralis_Contig71.86.3 ID=prot_P-littoralis_Contig71.86.3|Name=mRNA_P-littoralis_Contig71.86.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=583bp
MTACSALLFRSALVAILAHAVGGNEFRDGSSATAVSPPRSQAFESAPESR
STSSRVAADNRFEAGADVDTGPDPFFADLEVAVPQQENVDLPRSSRKQMI
FSVEVYEVQSGGLGRKWREARMGWTYKDGSSALPPAMVKVPDDWDWASEW
KIDGSGGRDVGGWEYSKDLTKFNLSRVPRGKKLADRFRRRRWVRAMQCMR
TQEQQQDINEVGLQHQSISETTGVGAPAGIYEFGAEDFRFDLERDDVGLF
PAPEMHERRDRTRKPLKLPEFGHALTACKDWWAEEFLFRGFGIGFAKPLF
RGLLLRPDFGLGVRLPVTLHFRSWESREALPSIALSFFFLWPPAVQVSQA
MSYPAELLQELATTAARKIAVPSKEAVQVRRRKESVQRLGVSFGVRYSAT
YGVQYWLAPYFFLLPGVRIIWTLYQSMMTMVLSSLALVQRSDQSGLGGEN
GKDETQEALWVVALRSWAAAKTSGLGYSLYYSGNRLGGAAYVNFMPFFIP
SFSLNRFTSTESSNVQESGAQHQVVDSNVQQQAEEESRAQEVVDQGVALG
SNHPPSVELHETNAEENGGPSKRGGALQAFSA*
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mRNA from alignment at P-littoralis_Contig71:318766..322679-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig71.86.3 ID=mRNA_P-littoralis_Contig71.86.3|Name=mRNA_P-littoralis_Contig71.86.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=3914bp|location=Sequence derived from alignment at P-littoralis_Contig71:318766..322679- (Pylaiella littoralis U1_48)
ATGACGGCGTGTAGTGCTTTGCTGTTCCGCTCTGCACTAGTAGCTATTCT
AGCTCATGCGGTGGGAGGAAACGAGTTCAGAGATGGCTCGAGTGCTACTG
CTGTATCACCTCCTCGATCACAAGCGTTCGAATCAGCACCAGAGAGCAGG
TCGACGTCCTCGCGAGTTGCAGCAGACAACAGGTTTGAAGCCGGAGCCGA
TGTCGACACAGGACCTGACCCGTTCTTCGCAGATCTCGAGGTCGCTGTGC
CACAACAGGAAAACGTTGATCTTCCCCGTTCATCACGAAAACAAATGATA
TTCTCGGTCGAGGTGTACGAGGTTCAGTCGGGCGGGCTTGGGAGAAAATG
GCGAGAGGCAAGGATGGGATGGACGTACAAGGTACAGCAAGAAGGATTTG
AGTCACGCGTTTTCTTGGTGGAGGTTTATCAACGGAGTCAATGCCGCTTC
TCGGCTTCTAGTGGGTTTCTCATTTGTCCTGCGCCTTTGAGTTTCCGCTA
AAGCAGTGAAAACGAACATTTGGCGCGCTTCGTGCTGCGCATCCTATGAG
CAGACATTCCAGCTGAAAAAAACTGTCCGCAGTTGGTACGCACTGCAAAA
TGAAGGTCGAGAAAAAAGAAAGAAACACCGATGACTCTGTATCGTTGCAG
CAGTATGATATCATGCGAATGCAGGACGTGTCGCCCTGTTACCGTAGATT
GCATGGACATACATACTCCGGAGTATGATTTTGTACATAATTTCATCGAA
TGATAGGATGTGTGTTTTACCCTTCCTAACATCTTAAATCGAACTAACCT
GTAAACCCTCTGCAAAAGGTACTCGAATTCTTCAATTCTCCTAGAAAGCG
GTTACGACACCGACTAAGTACAGCTGTAGCATTCTAGTTGCCGCCAAAAG
TCGAGCCAGGTCTAAAGGGGTTCAAGCATTGCATGGTTTGTTTCGAAGAA
ACGTAAACGACGCGATTGTCCTTACAACAACCGTAACGGCAAACAGGATG
GCTCTTCGGCCCTTCCACCAGCGATGGTTAAAGTGCCGGATGACTGGGAC
TGGGCTAGCGAATGGAAAATTGATGGGTCAGGAGGGAGGGATGTTGGCGG
ATGGGAGTACTCGAAAGACCTCACGAAGTTCAATTTATCTCGCGGTGAGT
GTCTTGAACTGATGAGTAAGTAGCCTTGGGCTTCTAAAACTTTCGAGCGC
CAACATTAAACGAGTCTGCGTGCTCGACATCCCTTCTTCCGGAGCCACCC
CGTGACACGAGCTGGCACGTTTCTGAGGTACCTCCACGTAACGCCCCCAA
CCCACACCCCTCACTAGTTTTTCGAACAATCTCCTCATATTTAATGAGAT
CGGGGGAATTTTGAAAAACCTATACGGCCTTGTGTGTTGTACTTCGAAGC
ATGTATTGTACTTCGTATTTATTTTCCGTCATCTCTGATGTCGAGAATTC
TCCACTCGAAAGTCATCAGTGCAAGTACAGCGTTTTCCCCACGTTCCCAT
AGTGTTGCAGTTTGGCTGAGGCGTGCAACCAGAGCTCACGTCCCCTGATG
CACTGGGATTTGAAATTTGTGCAGTGCCTAGAGGGAAAAAACTGGCGGAT
CGGTTTCGGCGAAGAAGGTGGGTTCGGGCCATGCAATGCATGCGGACCCA
GGAACAACAGCAGGTGAGATACATCAGTAGCTGTAGGGCTGGGGATATCG
AGAGAAGTAACCGTGTGCGGTGTTGTTTGTCGTTGACGTTTGTGGTTGTG
GGAACCCGTGGTATTTCCTGGGCTTTGAAGTTCCAAGCACGGAAATTCCG
GCATACTGAATCACACCAGCGTCAATTTACCCTGTGCTGACCTACATCCC
AGGATATTAACGAGGTCGGCCTTCAACATCAAAGTATTTCAGAAACCACG
GGTGTGGGGGCTCCAGCTGGTATATACGAATTTGGCGCGGAAGACTTTCG
GTTTGATCTGGAAAGAGACGATGTTGGCCTTTTCCCGGCACCAGAGATGC
ATGAACGCCGAGACAGAACCAGGAAGCCCCTCAAGCTACCTGAGTTCGGC
CACGCATTGACAGCATGCAAGGACTGGTGGGCGGAAGAGTTTCTTTTTCG
GGGGTTTGGAATCGGCTTCGCCAAGCCATTGTTCAGAGGCCTCCTTCTTC
GTCCGGACTTTGGGTTAGGCGTCCGTCTCCCGGTGACATTGCACTTCCGT
TCATGGGAGAGCAGGGAAGCCCTTCCATCTATTGCGCTGTCGTTCTTCTT
TCTGTGGCCGCCTGCCGTACAAGTCTCCCAGGCAATGTCGTATCCTGCAG
AATTGCTGCAGGAGTTGGCCACTACGGCGGCTCGCAAAATTGCGGTACCG
TCAAAGGAGGCTGTGCAGGTTAGATGAATTCATTAACTTCTCCGGCCGAT
GCCACAGCAGCCGTAGAAATAAGCCGTTGTTTCGTTCCTGTTTTACATGC
TTACGTACAGTGTCCTCCGCGAAATAGGCGCAAGTGCCAAGAAAATGTGC
TGCACCTGGCTGTGTGCAAACTTGATTTCTTAATTTACATGCTCACGTAC
AGTGTCCTCCGCGAAATGGGCGCAAGTGCCAAGAAAATGTGCTGCACCTG
GCTGTGTGCATGCTTACGTACAGTGTCCTCCGCGAAATGGGCGCAAGTGC
CAAGAAAATGTGCTGCACCTGGCTGTGTGCAAACTTGATTTCTTAAACAC
AGGTGCGGCGCCGCAAGGAATCTGTTCAGAGACTGGGGGTCAGTTTTGGG
GTACGCTACTCCGCAACATATGGGGTGCAATACTGGCTGGCTCCTTATTT
CTTCCTGCTTCCAGGAGTGAGAATTATTTGGACTCTCTATCAATCAATGA
TGACGATGGTGCTGTCCAGCTTGGCCCTGGTGCAAAGGTGTGTGTAACGT
ACATCACGTAAGATGCCACCTTCAGCGGCTGATTCTGTACGCCTGCAAGC
GGTGCCTTTTGGCACTAGGGAGATTGGCCTGAGGAGGCGGGGCGGTGCGT
CTGGTTGCCGTGTATTTGTGGCGTATCATCGCACTGTCTTGCTGTCAACA
GGCGTCTTTGGTGTGAGTTCGAGTGGACGTCCATATTGCATATAGGAGTG
AATTGTATTTTAACGAGTCAGGTATCAAATGTACGGCGCACCCAGGCTAC
AAGTCGTGCGTCACACGAACATATGAGCACGTCGCACCACTAGGCCACAG
CTCGTGTGCACTGGCTATTGAGGTCGTGGCCTGCTGCTGTTCAATGCGCA
ACGCATCATCGAGCACAGACAGACCAATGAATCGTCTTGCTGGCGTTACA
GGTCTGATCAAAGTGGACTGGGCGGAGAAAACGGTAAAGACGAAACTCAA
GAAGCGCTTTGGGTTGTGGCGCTGAGGAGCTGGGCAGCTGCCAAAACATC
AGGACTAGGCTATTCTTTATACTATTCTGGCAACCGTTTGGGGGGTGCCG
CCTACGTGAACTTTATGCCGTTTTTCATTCCTTCGTTTTCATTGAATCGG
TTCACGTCGACGGAGAGCAGCAATGTTCAGGAATCAGGCGCACAACACCA
AGTGGTGGACTCCAATGTGCAACAACAGGCAGAAGAGGAAAGTCGGGCGC
AGGAGGTAGTTGACCAAGGCGTCGCTCTCGGATCAAACCACCCACCTAGC
GTTGAGTTACATGAAACCAACGCTGAAGAGAATGGAGGCCCTAGCAAGCG
TGGGGGTGCATTGCAGGCGTTCTCTGCGTAAGGCATGCATAAGATCGTTG
TACATATGATAGCTTATCTTCCGGGTTGTGCAAATAAAACGATACTGTTC
GCAATATCGCAATTCGCAGTATCGCAATACCGTGAAAGTTTGACATCGGG
CAATCCTCCTAGCCTTATAACAAGGTCAAGCCCGGGGCTTGATCTCCGAA
TATAAAAGGGATGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig71:318766..322679-

>mRNA_P-littoralis_Contig71.86.3 ID=mRNA_P-littoralis_Contig71.86.3|Name=mRNA_P-littoralis_Contig71.86.3|organism=Pylaiella littoralis U1_48|type=CDS|length=1749bp|location=Sequence derived from alignment at P-littoralis_Contig71:318766..322679- (Pylaiella littoralis U1_48)
ATGACGGCGTGTAGTGCTTTGCTGTTCCGCTCTGCACTAGTAGCTATTCT
AGCTCATGCGGTGGGAGGAAACGAGTTCAGAGATGGCTCGAGTGCTACTG
CTGTATCACCTCCTCGATCACAAGCGTTCGAATCAGCACCAGAGAGCAGG
TCGACGTCCTCGCGAGTTGCAGCAGACAACAGGTTTGAAGCCGGAGCCGA
TGTCGACACAGGACCTGACCCGTTCTTCGCAGATCTCGAGGTCGCTGTGC
CACAACAGGAAAACGTTGATCTTCCCCGTTCATCACGAAAACAAATGATA
TTCTCGGTCGAGGTGTACGAGGTTCAGTCGGGCGGGCTTGGGAGAAAATG
GCGAGAGGCAAGGATGGGATGGACGTACAAGGATGGCTCTTCGGCCCTTC
CACCAGCGATGGTTAAAGTGCCGGATGACTGGGACTGGGCTAGCGAATGG
AAAATTGATGGGTCAGGAGGGAGGGATGTTGGCGGATGGGAGTACTCGAA
AGACCTCACGAAGTTCAATTTATCTCGCGTGCCTAGAGGGAAAAAACTGG
CGGATCGGTTTCGGCGAAGAAGGTGGGTTCGGGCCATGCAATGCATGCGG
ACCCAGGAACAACAGCAGGATATTAACGAGGTCGGCCTTCAACATCAAAG
TATTTCAGAAACCACGGGTGTGGGGGCTCCAGCTGGTATATACGAATTTG
GCGCGGAAGACTTTCGGTTTGATCTGGAAAGAGACGATGTTGGCCTTTTC
CCGGCACCAGAGATGCATGAACGCCGAGACAGAACCAGGAAGCCCCTCAA
GCTACCTGAGTTCGGCCACGCATTGACAGCATGCAAGGACTGGTGGGCGG
AAGAGTTTCTTTTTCGGGGGTTTGGAATCGGCTTCGCCAAGCCATTGTTC
AGAGGCCTCCTTCTTCGTCCGGACTTTGGGTTAGGCGTCCGTCTCCCGGT
GACATTGCACTTCCGTTCATGGGAGAGCAGGGAAGCCCTTCCATCTATTG
CGCTGTCGTTCTTCTTTCTGTGGCCGCCTGCCGTACAAGTCTCCCAGGCA
ATGTCGTATCCTGCAGAATTGCTGCAGGAGTTGGCCACTACGGCGGCTCG
CAAAATTGCGGTACCGTCAAAGGAGGCTGTGCAGGTGCGGCGCCGCAAGG
AATCTGTTCAGAGACTGGGGGTCAGTTTTGGGGTACGCTACTCCGCAACA
TATGGGGTGCAATACTGGCTGGCTCCTTATTTCTTCCTGCTTCCAGGAGT
GAGAATTATTTGGACTCTCTATCAATCAATGATGACGATGGTGCTGTCCA
GCTTGGCCCTGGTGCAAAGGTCTGATCAAAGTGGACTGGGCGGAGAAAAC
GGTAAAGACGAAACTCAAGAAGCGCTTTGGGTTGTGGCGCTGAGGAGCTG
GGCAGCTGCCAAAACATCAGGACTAGGCTATTCTTTATACTATTCTGGCA
ACCGTTTGGGGGGTGCCGCCTACGTGAACTTTATGCCGTTTTTCATTCCT
TCGTTTTCATTGAATCGGTTCACGTCGACGGAGAGCAGCAATGTTCAGGA
ATCAGGCGCACAACACCAAGTGGTGGACTCCAATGTGCAACAACAGGCAG
AAGAGGAAAGTCGGGCGCAGGAGGTAGTTGACCAAGGCGTCGCTCTCGGA
TCAAACCACCCACCTAGCGTTGAGTTACATGAAACCAACGCTGAAGAGAA
TGGAGGCCCTAGCAAGCGTGGGGGTGCATTGCAGGCGTTCTCTGCGTAA
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