mRNA_P-littoralis_Contig71.50.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig71.50.2 vs. uniprot
Match: D8LH53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH53_ECTSI) HSP 1 Score: 569 bits (1466), Expect = 7.650e-189 Identity = 286/343 (83.38%), Postives = 314/343 (91.55%), Query Frame = 1
Query: 1 EKYVQLIASQCRARGALGAKIFEGMFAAMPSFATTAAATVCSLNHALCKDIATRYLAALLNDMTRSAGLVQELIDGTEDHLEGIPINVSVIQGGMFSAGVEVACLLADVAFLEMDGVCAEFFQADWYADDENAVMRKACKLLNVGIAQLESQTVKEPFFDHVIGAATEKIAFRYLAGLIRRCTD-QAGGKMMTDEELERMQADVDMMQSFASKYGKVGMTSVLHLKEALVFLTEKPEILQQAVFVDILKRHAGKEEHVMKMLKVLTAVREDLRNFFVPAWLNKLAQKQIAVERERRMLEMEGDGRASRIAFDVFEWVFKCDLTQPKGAYVYKYLMQCLTAPRV 1026
EKYV LI+SQCRARG LGAKIFEGMFAAMPSFATTAAA V +LNHA KD TRYLAA LNDMTRSAGLVQE+IDG+E+HL+GIPI+VS IQGGMFSAGVEVACLLADVA LEMD VCAEFFQADWYADDENAVMRKACKLLNVGIA+LESQTVKEPFFDHVIGAATEKIAFRYLAGL+ RC D Q+GGKM+T+EELERMQ DV+MMQS+ +KYG+VG+TSVLHLKEA++FLTEKPEI+QQ VFVDILKRH GKEEHVM MLK LTAVR+DLRNFFVPAWLNKL QKQ AV +ER+M+E+EGDGRASRIAFD FEWVF+ ++TQPK AYVYKYLMQCL A RV
Sbjct: 1088 EKYVPLISSQCRARGNLGAKIFEGMFAAMPSFATTAAAAVFALNHASSKDTTTRYLAAFLNDMTRSAGLVQEMIDGSEEHLQGIPIDVSAIQGGMFSAGVEVACLLADVALLEMDAVCAEFFQADWYADDENAVMRKACKLLNVGIARLESQTVKEPFFDHVIGAATEKIAFRYLAGLVHRCKDHQSGGKMITEEELERMQNDVEMMQSYVAKYGQVGVTSVLHLKEAIIFLTEKPEIIQQVVFVDILKRHEGKEEHVMSMLKTLTAVRDDLRNFFVPAWLNKLTQKQTAVVQERQMMELEGDGRASRIAFDAFEWVFQSEVTQPKDAYVYKYLMQCLQASRV 1430
BLAST of mRNA_P-littoralis_Contig71.50.2 vs. uniprot
Match: A0A835YSM4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSM4_9STRA) HSP 1 Score: 399 bits (1026), Expect = 6.850e-125 Identity = 202/340 (59.41%), Postives = 250/340 (73.53%), Query Frame = 1
Query: 1 EKYVQLIASQCRARGALGAKIFEGMFAAMPSFATTAAATVCSLNHALCKDIATRYLAALLNDMTRSAGLVQELIDGTEDHLEGIPINVSVIQGGMFSAGVEVACLLADVAFLEMDGVCAEFFQADWYADDENAVMRKACKLLNVGIAQLESQTVKEPFFDHVIGAATEKIAFRYLAGLIRRCTDQAGGKMMTDEELERMQADVDMMQSFASKYGKVGMTSVLHLKEALVFLTEKPEILQQAVFVDILKRHAGKEEHVMKMLKVLTAVREDLRNFFVPAWLNKLAQKQIAVERERRMLEMEGDG-RASRIAFDVFEWVFKCDLTQPKGAYVYKYLMQCLTA 1017
EKY+QLI SQC+ARG LGAK+FE MF A+PS+A AA T+ LNH C A RYL+A+LNDM+RS L L+ +HL G+P++V+ I G+ +GVEVACLLADVA ++D VCA FFQA+WY+DDENAVMRKACKLL + +LES EPFF V+ A EKIAFRY+ G I R TDQ+GGK + EE+E+M+AD+DMM+ F KYG MTSV HLKE +V LTE+PE+LQQAVFV+IL RH GKEE V K+LKV T+VR+DLRNF+VPAWLNKL QK A+ ER LE + R + + FD+FEW F +L +P GAY+Y YLMQCL A
Sbjct: 1048 EKYMQLIVSQCQARGNLGAKVFEAMFGALPSYAANAARTIALLNHTPCAWNAVRYLSAILNDMSRSGALSDALLVTNAEHLVGVPVDVTAISSGIRGSGVEVACLLADVALQQVDAVCASFFQAEWYSDDENAVMRKACKLLCRKMDELESMIHAEPFFPVVVEAGVEKIAFRYVLGFIHRATDQSGGKTVVPEEVEKMRADIDMMEQFTRKYGPAVMTSVHHLKELMVMLTERPEVLQQAVFVEILMRHEGKEEQVFKLLKVATSVRDDLRNFYVPAWLNKLKQKMNAIVAERVELEQSTNAQRGAAVRFDIFEWAFGANLDRPDGAYLYTYLMQCLRA 1387
BLAST of mRNA_P-littoralis_Contig71.50.2 vs. uniprot
Match: A0A6H5KQB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB5_9PHAE) HSP 1 Score: 329 bits (844), Expect = 3.040e-110 Identity = 164/204 (80.39%), Postives = 184/204 (90.20%), Query Frame = 1
Query: 283 MFSAGVEVACLLADVAFLEMDGVCAEFFQADWYADDENAVMRKACKLLNVGIAQLESQTVKEPFFDHVIGAATEKIAFRYLAGLIRRCTD-QAGGKMMTDEELERMQADVDMMQSFASKYGKVGMTSVLHLKEALVFLTEKPEILQQAVFVDILKRHAGKEEHVMKMLKVLTAVREDLRNFFVPAWLNKLAQKQIAVERERRML 891
MFSAGVEVACLLADVA LEMD VCAEFFQADWYADDEN VM KACKLLNVGI +LESQ VKEPFFDH+IGAATEKIAFRYLAGL+ RC D Q+GGKM+T+EELERMQ+DV+MMQSF +KYG+ G+TSVLHLKEA+VFLTEKPEI+QQ VFVDILKRH GKEEHVM MLK LTAVR+DLRNFFVPAWLNK + ++A +RE+ +L
Sbjct: 1 MFSAGVEVACLLADVALLEMDAVCAEFFQADWYADDENVVMHKACKLLNVGITRLESQIVKEPFFDHIIGAATEKIAFRYLAGLVHRCKDHQSGGKMITEEELERMQSDVEMMQSFVAKYGQAGVTSVLHLKEAIVFLTEKPEIIQQVVFVDILKRHEGKEEHVMSMLKTLTAVRDDLRNFFVPAWLNKPSLNKLA-DREQTLL 203
BLAST of mRNA_P-littoralis_Contig71.50.2 vs. uniprot
Match: A0A835YWA9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWA9_9STRA) HSP 1 Score: 286 bits (733), Expect = 1.520e-83 Identity = 162/393 (41.22%), Postives = 221/393 (56.23%), Query Frame = 1
Query: 1 EKYVQLIASQCRARGALGAKIFEGMFAAMPSFATTAAAT------------------------------------------VCSLNHALCKDIATRYLAALLNDMTRSAGLVQELIDGTEDHLEGIPINVSVIQGGMFSAGVEVACLLADVAFLEMDGVCAEFFQADWYADDENAVMRKACKLLNVGIAQLESQTVKEPFFDHVIGAATEKIAFRYLAGLIRRCTDQAGGKMMTDEELERMQA-----------DVDMMQSFASKYGKVGMTSVLHLKEALVFLTEKPEILQQAVFVDILKRHAGKEEHVMKMLKVLTAVREDLRNFFVPAWLNKLAQKQIAVERERRMLEMEGDGRASRIAFDVFEWVFKCDLTQPKGAYVYKYLMQCLTAP 1020
EKY+ LI +QC+ RG LG ++ M AA+PS+A+ A+ V SLNHA C RYL+A+ NDM+RS L + + L G+P++ I+ G+ S GVE A LLADVA ++D VC FF+ +WY++ ENA MRK CKLL + +LE EPFF ++ A KIAFRYL +RR TDQ+ G+++T EE+E+M DVD M+ + KYG ++SV LKE L +TEKPE ++ AVF ++L+ H G+E+ V +++KV A R DLRNF+VPAWLNKL Q Q+ E R + RA +AFD+F W F + QP+ AY+YKYLM CLTAP
Sbjct: 1242 EKYLPLITTQCQGRGELGMQVVLAMLAALPSYASNASLDLDSFTHSLTHSITFDCHGREXXXXXXXXXXXXXXXXXXXXXXVMSLNHAPCAWNCVRYLSAITNDMSRSTTLSDMFLTKYAEDLVGVPVDALAIRHGIKSGGVEAAFLLADVALKQVDEVCTGFFKPEWYSEKENATMRKTCKLLCCKVEELEGMVSSEPFFPVIVEAGVAKIAFRYLHAFLRRATDQSNGRLVTAEEIEKMAGAWTVFTGRYGRDVDTMEQYLRKYGPTVLSSVYRLKELLSLMTEKPETIEDAVFGELLEGHEGQEDSVYRLVKVCAAARADLRNFYVPAWLNKLRQ-QMTTHLEGR------EARAPAVAFDIFAWGFAAKVVQPEDAYIYKYLMTCLTAP 1627 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig71.50.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig71.50.2 >prot_P-littoralis_Contig71.50.2 ID=prot_P-littoralis_Contig71.50.2|Name=mRNA_P-littoralis_Contig71.50.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=320bp MFAAMPSFATTAAATVCSLNHALCKDIATRYLAALLNDMTRSAGLVQELIback to top mRNA from alignment at P-littoralis_Contig71:181225..184704+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig71.50.2 ID=mRNA_P-littoralis_Contig71.50.2|Name=mRNA_P-littoralis_Contig71.50.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3480bp|location=Sequence derived from alignment at P-littoralis_Contig71:181225..184704+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig71:181225..184704+ >mRNA_P-littoralis_Contig71.50.2 ID=mRNA_P-littoralis_Contig71.50.2|Name=mRNA_P-littoralis_Contig71.50.2|organism=Pylaiella littoralis U1_48|type=CDS|length=960bp|location=Sequence derived from alignment at P-littoralis_Contig71:181225..184704+ (Pylaiella littoralis U1_48)back to top |