mRNA_P-littoralis_Contig71.49.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig71.49.1 vs. uniprot
Match: D8LH53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH53_ECTSI) HSP 1 Score: 1229 bits (3179), Expect = 0.000e+0 Identity = 637/793 (80.33%), Postives = 694/793 (87.52%), Query Frame = 1
Query: 1 RWTVVLRVACQANSEVDPEKAKKLVVPEYCKDPIHPDHPTAGWLRRKKRDKRALTSAFVNRFFRLEYDALIMRYTLSYAKEPSDETGRATKVSLDDGTSVLLANILPSPTPFALQIEVQGVSDFSFSEHNSLRVVAQLGSLRQCTRAFKPKETSSIQSNLLLPIEKGCLAYSNGSVATGNVGWFGEDVTLPEKQQGGDTKFEFLTFFIGEEQGTNATTAVASCSVPFSDLQFGRQQDMSLSLKGPAVADAEQLTVGITMRRLGQYKTAWPATMTTLLQAGNASSADQDLWEGPCMIRTAPQGLEVFRPMVNPEDPNKAVMTIDYYSVEAMTDVNASTLDISVIIEDESTIASSRGSARSLAPTPRRRQSPSTPSTVP--SPLSXXXXXXXXVPEANRVSPGALSKVEVFGGSPDLSPPIRPALGRRGSFGMVTRKGQSVSPSKSPT--THLVSEKGQRSP----KVTIPHDYFILRISPCPAETLKDLVSERRWMFKCRNMLLYITNRLHELKEEERTHGTCGPLASDRTVREKLAIASAETYRMIRTDMSEIIKTSDWKRARGVGFTERLSVYFAKLLESKAHPLWGFDDPIDPRAFAREDLDRVFASQYVQSGTFGAEAQGIENSVKGVGWALKSLNRRLDETKLFYHHSPENISSTSGIFFQEYFLRCTGELGAHVMCDNILREVPIEVVVAFVCFLVKRDNAFHDLLVENSLEPDTNAFLTSILSIDSMIRRLTKRTELEIVAQWPNEGDIADDATPAYLTSLLADCSPDADNAGKLSTRAPEELMQLL 2355
RWTVVLR+ACQANSEVD EKAKKLV+PEYCKDP+HPDHPTAGWLRRKKRDKRALTS+FVNRFFRLEYDA IMRYT SY K+PSD+ + TKV LDDGTSVLL ++ P PTPFALQI VQ VSDFSFSEH+SLRVVAQLGSLRQCTRAF PKE++SI+SNLLLP+E+ CLAY N SV+TGNVGWFGEDVTLPEKQ+GGD KFE L FFIGE QG NA TAVA+CSVPF+DLQFGRQQDM+LSL GP V DAE+LTVGITMRRLGQYKTAWPATMT LLQAG+ +S DQ +WEGPCM+RTAPQGLEVFRPM NPE+P KA+MTIDYYSVEAMTDVNASTLDI+VIIEDES+ S++GSAR P+ ST+P SPLS XXXXXXX VSPGA S+ VFG D P RP L RRGSFGMVTRKG+SVSPSKSP T S G+ KVT+PHDYFILRISPCPAETLKDLVSERRWMFKCRNMLLYITNRLH+L++EE THG GPLASDR +REKLAIASAETY+M+R DMSEIIKTSDWKRARGVGFTER+SVYFAKLLESKAHPLWG D+PIDP FAR+DLDRVF+SQYVQSGTFGAEAQGIENSVKGVGWALKSLNRR DETKLFY++SPE+I TS IFFQEYFLRCTGELGAHV+ DNIL+EVPIEVVVAFVCFLVKRDNAFHDLLV+N LEPDTNAFLTSILSIDSMIRRLTKRTELEIVAQWPNEGDI++DATPAYLTSLL DCSPDA+N GKLSTRAPEELM+LL
Sbjct: 300 RWTVVLRIACQANSEVDVEKAKKLVIPEYCKDPVHPDHPTAGWLRRKKRDKRALTSSFVNRFFRLEYDAYIMRYTFSYGKDPSDDATQMTKVGLDDGTSVLLPSVPPVPTPFALQIVVQQVSDFSFSEHDSLRVVAQLGSLRQCTRAFCPKESTSIKSNLLLPVEQQCLAYGNTSVSTGNVGWFGEDVTLPEKQEGGDKKFELLRFFIGEGQGANAKTAVATCSVPFADLQFGRQQDMNLSLNGPEVEDAEELTVGITMRRLGQYKTAWPATMTALLQAGSTTSTDQTMWEGPCMVRTAPQGLEVFRPMANPEEPTKAIMTIDYYSVEAMTDVNASTLDIAVIIEDESSAFSTQGSARK---PPKXXXXXXXXSTLPPPSPLSGXXXXXXXXXXTPGVSPGAFSRSGVFG--LDSPAPTRPNLDRRGSFGMVTRKGKSVSPSKSPIKDTRFRSTNGRGDSAAPKKVTVPHDYFILRISPCPAETLKDLVSERRWMFKCRNMLLYITNRLHQLRQEEETHGEGGPLASDRGLREKLAIASAETYKMLRADMSEIIKTSDWKRARGVGFTERMSVYFAKLLESKAHPLWGLDNPIDPTGFARQDLDRVFSSQYVQSGTFGAEAQGIENSVKGVGWALKSLNRRFDETKLFYNNSPEDIVKTSRIFFQEYFLRCTGELGAHVISDNILKEVPIEVVVAFVCFLVKRDNAFHDLLVDNYLEPDTNAFLTSILSIDSMIRRLTKRTELEIVAQWPNEGDISEDATPAYLTSLLEDCSPDAENDGKLSTRAPEELMKLL 1087
BLAST of mRNA_P-littoralis_Contig71.49.1 vs. uniprot
Match: A0A835YSM4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSM4_9STRA) HSP 1 Score: 748 bits (1932), Expect = 1.360e-251 Identity = 415/803 (51.68%), Postives = 527/803 (65.63%), Query Frame = 1
Query: 1 RWTVVLRVACQANSEVDPEKAKKLVVPEYCKDPIHPDHPTAGWLRRKKRDKRALTSAFVNRFFRLEYDALIMRYTLSYAKEPSDETGRATKVSLDDGTSVLLANILPSPTPFALQIEVQGVSDFSFSEHNSLRVVAQLGSLRQCTRAFKPKETSSIQSNLLLPIEKGCLAYSNGSVATGNVGWFGEDVTLPEKQQGGDTKFEFLTFFIGEEQGTNATTAVASCSVPFSDLQFGRQQDMSLSLKGPAVADAEQLTVGITMRRLGQYKTAWPATMTTLLQAGNASSADQDLWEGPCMIRTAPQGLEVFR-PMVNPEDPNKAVMTIDYYSVEAMTDVNASTLDISVIIEDESTIASSRGSARSLAPTPRRRQSPSTPSTVPSPLSXXXXXXXXVPEANRVSPGALSKVEVFGGSPDLSPPIRPALGRRGSFGMVTRKGQSVSPSKS---PTTHLVSEKGQRSPKVTIPHDYFILRISPCPAETLKDLVSERRWMFKCRNMLLYITNRLHELKEEERTHGTCGPLASDRTVREKLAIASAETYRMIRTDMSEIIKTSDWKRARGVGFTE----------RLSVYFAKLLESKAHPLWGFDDPI----DPRAFAREDLDRVFASQYVQSGTFGAEAQGIENSVKGVGWALKSLNRRLDETKLFYHHSPENISSTSGIFFQEYFLRCTGELGAHVMCDNILREVPIEVVVAFVCFLVKRDNAFHDLLVENSLEPDTNAFLTSILSIDSMIRRLTKRTELEIVAQWPNEGDIADDATPAYLTSLLADCSPDADNAGKLSTRAPEELMQLL 2355
RWT VL+VAC ANSE +PE+ KLV+P+YCKDP HP+HPTAGWLRR+K ++ + + +V RFFRLE D RY L Y+ E +++ T+V + +GT V+ +L PTPFAL I V VSDFSF + L A LG+ RQ T++ P++T+ + LLLP+ LA++N SV T N+GWFGE+V +P ++ G L + A+A SVPF+ L FGR D+ L L+G ++ +++V +TMRRLGQYKTAWPA T ++Q N + + D WEG CM+R APQGLEV+R P + ++P+ A + +DYYS+EA+T VN STLD++VIIE + G S +R SP+ + G L FGG +P +R A RR SFGMV KG+S SPS P HDYFILRI+PCPAETLKDL+ ER+WMF+ R+MLLYIT +L ++ E + GP++SD +EKLA A+AETYR IRT+M EIIKT++WK AR VGFT+ RLS YFAKL+ESKA PLW D DPR FAR DLD +FASQYVQ GTFGAEAQGIENSVKGVG AL++L++R+DE KL++H P +I + + F EY+LRC GELGAHV+ D +L+EVPIEVVVAFVCFLVKRD +FH+LL E++LEPD N FLT+ILSIDSM+RRLTKRTELEIVAQWP EGDI DA P Y+ SLL DCSPDA GKLSTRAPEELM+LL
Sbjct: 283 RWTAVLKVACDANSETNPERLAKLVIPDYCKDPTHPEHPTAGWLRRRKANRTSFSGDYVRRFFRLESDG-DGRYALYYSHELCEDSRLMTRVPIVEGTRVVTPQMLAPPTPFALSIAVNRVSDFSFPTVSELAACATLGTQRQRTKSIIPRQTTEFNAQLLLPVPADLLAHANDSVTTVNIGWFGEEVAVPPRRDDGGAAPRLLLSVHDTSSASGGEVALARASVPFASLPFGRPVDLKLPLEG-LTSNGAEISVTVTMRRLGQYKTAWPARKTRVIQTTNCAEKEDDKWEGQCMVRAAPQGLEVYRLPAPSKDNPSPAAV-VDYYSIEAITAVNESTLDVAVIIEATMGLGGPDGGISSAGAVEKRTLSPAA------------------------TQGGLG----FGGR---APRVRNAQ-RRMSFGMVNTKGKSPSPSPKGVEPKKXXXXXXXXXXXXXXSAHDYFILRITPCPAETLKDLMRERKWMFRDRSMLLYITYKLDAMRAEAESPEGTGPVSSDPQTKEKLARAAAETYRRIRTNMGEIIKTANWKHARAVGFTQEHTRMFFRLQRLSCYFAKLIESKARPLWALDAAPGCAPDPRPFARRDLDAIFASQYVQGGTFGAEAQGIENSVKGVGHALRALHQRMDEVKLYFHDDPASIETAANTVFVEYYLRCIGELGAHVISDEVLQEVPIEVVVAFVCFLVKRDKSFHELLTEHALEPDRNTFLTTILSIDSMLRRLTKRTELEIVAQWPKEGDIEGDAGP-YVASLLGDCSPDA--GGKLSTRAPEELMRLL 1047
BLAST of mRNA_P-littoralis_Contig71.49.1 vs. uniprot
Match: A0A835YWA9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWA9_9STRA) HSP 1 Score: 439 bits (1128), Expect = 6.310e-132 Identity = 323/942 (34.29%), Postives = 454/942 (48.20%), Query Frame = 1
Query: 1 RWTVVLRVACQANSEVDPEKAKKLV-VPEYCKDPIHPDHPTAGWLRRKKRDKRALTSAFVNRFFRLEYDALIMRYTLSYAKEPSDETGRATKVSLDDGTSVLLANILPSPTPFALQIEVQGVSD---------------------------------------------------FSFSEHNSLR---------------VVAQLGSLRQCTRAFKPKETSSIQSNLLLPIEKGCLAYSNGSVATGNVGWFGEDVTLPEKQQGGDTKFEFLTFFIGEEQGTNATTAVASCSVPFSDLQFGRQQDMSLSLKGPAVADAEQLTVGITMRRLGQYKTAWPATMTTLLQAGNASSADQDLWEGPCMIRTAPQGLEVFRPMVNPE------------------DPNKAVMTIDYYSVEAMTDVNASTLDISVIIEDESTIASS------------RGSARSLAPTPRRRQSPSTPSTVPSPLSXXXXXXXXVPEANRVSPGAL----------SKVEVFGGSPDLSPPIRPALGR---------RGSFGMVTRKGQSVSPSKSPTTHLVSEKGQRSPKVTIPHDYFILRISPCPAETLKDLVSERRWMFKCRNMLLYITNRLHELKEEERTHGTCGPLASDRTVREKLAIASAETYRMIRT----------------DMSEII-KTSDW--KRARGVGFT----------ERLSVYFAKLLESKAHPLWGFDDP------------IDPRAFAREDLDRVFASQYVQSGTFGAEAQGIENSVKGVGWALKSLNRRLDETKLFYHHSPENISSTSGIFFQEYFLRCTGELGAHVMCDNILREVPIEVVVAFVCFLVKRDNAFHDLLVENSLEPDTNAFLTSILSIDSMIRRLTKRTELEIVAQWPNEGDIADDATPAYLTSLLADCSPDADNAGKLSTRAPEELMQLL 2355
RWT LR+AC AN+E D + L VP+YC+D HPD PTAGWL+R+K K+ + +V RFFRLE A Y L YA EP+D+ T+V++ +GT ++ +LP+PTPFA+ + ++ V+ + H R A LG R TR + L +P++ LAY+ +V NVGW GE+V + +++ D + +GE +A +VPF L FG+ D+ L + GPA A+ + + IT++RLGQ+KT WPA T ++ N + D WEG CM+R AP GLEVF+ V P D + VM +DY S+EA+T VN STLDI+VIIE ++A RGSA R+ P S L XXXXXXXX K G+ L R + GR R V G+SVSP+K P+ + +P+ DYF+LR+ PCPA L+ L +ER+ + R ML Y+ R D EK+A A+++TYR +R +++I+ + + W K+A+ G T +RL+ Y AKL+E K P W D +DPR F+R +LD +FA QY+Q + GIEN+VK G AL+ L RLDE L+ + ++ T+ F EY+LR GELGAH++ D +L +VPIE VVAFVCFLVKRD AF + L ++SL+P ++SILS ++M+RRLT+R LE+VA WP EG+I DA P Y+ LL DC+ AD++GKLSTRAPE+LM+L+
Sbjct: 339 RWTAALRIACDANAEPDAARRGALPRVPDYCRDASHPDRPTAGWLKRRKASKKTFSGDYVRRFFRLEPAAEGGAYALYYAHEPTDDVRTMTRVAIAEGTRLVTPQMLPAPTPFAVAVAIRAVNGPPALTVGVVVKCPLHIAVXXXXXXXXXXXXXXXXXLTAPXXXXXXXXXXXXXAARAHRRERRRGGSARRPARVNVAAAAALGDQRVRTRR------GDAAAPLAVPVQPNFLAYAAETVTAVNVGWSGEEVGILPREE--DVALPRVVLTLGEP----GAEPLARAAVPFDQLPFGKTLDLDLPMDGPA-ANGGDIAISITLKRLGQFKTVWPARKTRIITTSNPHETEADKWEGHCMVRAAPHGLEVFQ--VGPPXXXXXXXXXXXXXXTPNLDDKEPVMLVDYQSIEALTAVNDSTLDIAVIIEPSPSLAGPDSVGPAGSERMPRGSAGGGDRGSRKNSLPRRNSFGMITLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKEPCAVGARALLASERRSCGRMRRLAYPAYRNEARSVLALGKSVSPTKPPSGAAADARPPSAPQ----QDYFVLRVCPCPAFALRALANERQRTARDRGMLAYVATR-------------AAAREGDLQTLEKMAAAASDTYRSLRAXXXXXXXXXXXXXXXXSVADILAEAAAWPEKKAKRGGLTREQLRLTLRAQRLTCYLAKLMEVKCRPAWALDGAAXXXXXXXXXGGVDPRPFSRRELDGIFAQQYLQQ----TDPSGIENTVKATGRALRCLQERLDEVHLYLYDDDAALTKTATALFTEYYLRSMGELGAHLLSDGVLEQVPIETVVAFVCFLVKRDMAFSEALDDHSLKPSKAVAISSILSTETMLRRLTRRVMLEVVAAWPQEGEIEGDAGP-YVAGLLGDCA--ADSSGKLSTRAPEDLMKLM 1241 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig71.49.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig71.49.1 >prot_P-littoralis_Contig71.49.1 ID=prot_P-littoralis_Contig71.49.1|Name=mRNA_P-littoralis_Contig71.49.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=790bp RWTVVLRVACQANSEVDPEKAKKLVVPEYCKDPIHPDHPTAGWLRRKKRDback to top mRNA from alignment at P-littoralis_Contig71:170619..180797+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig71.49.1 ID=mRNA_P-littoralis_Contig71.49.1|Name=mRNA_P-littoralis_Contig71.49.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=10179bp|location=Sequence derived from alignment at P-littoralis_Contig71:170619..180797+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig71:170619..180797+ >mRNA_P-littoralis_Contig71.49.1 ID=mRNA_P-littoralis_Contig71.49.1|Name=mRNA_P-littoralis_Contig71.49.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2370bp|location=Sequence derived from alignment at P-littoralis_Contig71:170619..180797+ (Pylaiella littoralis U1_48)back to top |