mRNA_P-littoralis_Contig71.160.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig71.160.1
Unique NamemRNA_P-littoralis_Contig71.160.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig71.160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig71contigP-littoralis_Contig71:618637..619157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size521
Hectar predicted targeting categoryother localisation
Exons1
Cds size369
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791478.6411674-UTR-P-littoralis_Contig71:618636..6186861680791478.6411674-UTR-P-littoralis_Contig71:618636..618686Pylaiella littoralis U1_48UTRP-littoralis_Contig71 618637..618686 -
1680791478.6684499-UTR-P-littoralis_Contig71:619055..6191571680791478.6684499-UTR-P-littoralis_Contig71:619055..619157Pylaiella littoralis U1_48UTRP-littoralis_Contig71 619056..619157 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791478.6535194-CDS-P-littoralis_Contig71:618686..6190551680791478.6535194-CDS-P-littoralis_Contig71:618686..619055Pylaiella littoralis U1_48CDSP-littoralis_Contig71 618687..619055 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig71.160.1prot_P-littoralis_Contig71.160.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig71 618687..619055 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig71.160.1

>prot_P-littoralis_Contig71.160.1 ID=prot_P-littoralis_Contig71.160.1|Name=mRNA_P-littoralis_Contig71.160.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=123bp
MNTACRSEMTYQTTAAGSPHTALIALSLGKQGGVHICARQPTREWVAGET
RALFFCLARSDGKHRGNQPEIPIRSSTIREGLRAFRCHRPAHNDASAPAE
HLSERQVSYKHPPLIRPRLPLF*
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mRNA from alignment at P-littoralis_Contig71:618637..619157-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig71.160.1 ID=mRNA_P-littoralis_Contig71.160.1|Name=mRNA_P-littoralis_Contig71.160.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=521bp|location=Sequence derived from alignment at P-littoralis_Contig71:618637..619157- (Pylaiella littoralis U1_48)
CTGGGCTCAAGGCATGTAAACATTCCGAGGCGTCTTGTAGTGCAGTAGAA
GAGCCGAGACTTAAACGTTTGTCTAAAGCTCTGTAGGAATGAAGACGTCG
GTATGAATACTGCATGTAGGAGTGAAATGACATATCAAACTACCGCCGCA
GGGTCCCCTCACACAGCCCTCATCGCTTTATCTTTGGGGAAACAGGGAGG
AGTCCATATATGCGCACGGCAACCGACACGTGAATGGGTCGCGGGTGAAA
CCCGAGCGTTATTTTTTTGCCTCGCTCGGTCAGATGGGAAACACCGCGGC
AACCAGCCGGAAATCCCAATCAGGAGCTCAACAATACGAGAAGGACTGCG
TGCGTTCAGGTGCCATCGACCCGCCCACAACGACGCATCCGCACCGGCCG
AACATCTTTCAGAACGGCAGGTATCATACAAGCACCCACCTTTAATCCGA
CCCCGCCTGCCTTTGTTCTGATGTAGGCCAAGCCAAAGGGGTGTGCGGCT
GCATCCGGGTCCATCATGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig71:618637..619157-

>mRNA_P-littoralis_Contig71.160.1 ID=mRNA_P-littoralis_Contig71.160.1|Name=mRNA_P-littoralis_Contig71.160.1|organism=Pylaiella littoralis U1_48|type=CDS|length=369bp|location=Sequence derived from alignment at P-littoralis_Contig71:618637..619157- (Pylaiella littoralis U1_48)
ATGAATACTGCATGTAGGAGTGAAATGACATATCAAACTACCGCCGCAGG
GTCCCCTCACACAGCCCTCATCGCTTTATCTTTGGGGAAACAGGGAGGAG
TCCATATATGCGCACGGCAACCGACACGTGAATGGGTCGCGGGTGAAACC
CGAGCGTTATTTTTTTGCCTCGCTCGGTCAGATGGGAAACACCGCGGCAA
CCAGCCGGAAATCCCAATCAGGAGCTCAACAATACGAGAAGGACTGCGTG
CGTTCAGGTGCCATCGACCCGCCCACAACGACGCATCCGCACCGGCCGAA
CATCTTTCAGAACGGCAGGTATCATACAAGCACCCACCTTTAATCCGACC
CCGCCTGCCTTTGTTCTGA
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